RNA–Protein interactions for RNA: ENST00000560175.5

SMAD3-213, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 542 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-213ENST00000560175 SLIT2O94813 1529 aa18.79■□□□□ 0.6
SMAD3-213ENST00000560175 CABLES1Q8TDN4 633 aa18.79■□□□□ 0.6
SMAD3-213ENST00000560175 USP21Q9UK80 565 aa18.79■□□□□ 0.6
SMAD3-213ENST00000560175 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.78■□□□□ 0.6
SMAD3-213ENST00000560175 RBM6P78332 1123 aaKnown RBP18.78■□□□□ 0.6
SMAD3-213ENST00000560175 ATRNO75882 1429 aa18.77■□□□□ 0.6
SMAD3-213ENST00000560175 CABP1Q9NZU7 370 aa18.77■□□□□ 0.6
SMAD3-213ENST00000560175 SSH2Q76I76 1423 aa18.76■□□□□ 0.59
SMAD3-213ENST00000560175 LMOD2Q6P5Q4 547 aa18.76■□□□□ 0.59
SMAD3-213ENST00000560175 PUS7Q96PZ0 661 aaKnown RBP18.76■□□□□ 0.59
SMAD3-213ENST00000560175 TRPC5Q9UL62 973 aaPredicted RBP18.76■□□□□ 0.59
SMAD3-213ENST00000560175 NWD2Q9ULI1 1742 aa18.75■□□□□ 0.59
SMAD3-213ENST00000560175 PAK3O75914 559 aaPredicted RBP18.74■□□□□ 0.59
SMAD3-213ENST00000560175 TESK2Q96S53 571 aa18.74■□□□□ 0.59
SMAD3-213ENST00000560175 ATAD2Q6PL18 1390 aa18.73■□□□□ 0.59
SMAD3-213ENST00000560175 FAM83GA6ND36 823 aa18.73■□□□□ 0.59
SMAD3-213ENST00000560175 UNC5CLQ8IV45 518 aa18.73■□□□□ 0.59
SMAD3-213ENST00000560175 ZNF692Q9BU19 519 aaPredicted RBP18.73■□□□□ 0.59
SMAD3-213ENST00000560175 USP6P35125 1406 aa18.73■□□□□ 0.59
SMAD3-213ENST00000560175 CPSF1Q10570 1443 aaKnown RBP18.73■□□□□ 0.59
SMAD3-213ENST00000560175 AKAP12Q02952 1782 aa18.73■□□□□ 0.59
SMAD3-213ENST00000560175 SLC24A1O60721 1099 aa18.72■□□□□ 0.59
SMAD3-213ENST00000560175 PLCH1Q4KWH8 1693 aa18.71■□□□□ 0.59
SMAD3-213ENST00000560175 PHRF1Q9P1Y6 1649 aaKnown RBP18.71■□□□□ 0.58
SMAD3-213ENST00000560175 ST20-MTHFSA0A0A6YYL1 179 aa18.7■□□□□ 0.58
SMAD3-213ENST00000560175 HAP1P54257 671 aaPredicted RBP18.7■□□□□ 0.58
SMAD3-213ENST00000560175 COL14A1Q05707 1796 aaKnown RBP18.7■□□□□ 0.58
SMAD3-213ENST00000560175 USP19O94966 1318 aa18.7■□□□□ 0.58
SMAD3-213ENST00000560175 ABTB2Q8N961 1025 aa18.69■□□□□ 0.58
SMAD3-213ENST00000560175 GJD4Q96KN9 370 aaPredicted RBP18.69■□□□□ 0.58
SMAD3-213ENST00000560175 RGS12O14924 1447 aa18.68■□□□□ 0.58
SMAD3-213ENST00000560175 NRAPQ86VF7 1730 aa18.67■□□□□ 0.58
SMAD3-213ENST00000560175 VPS72Q15906 364 aa18.67■□□□□ 0.58
SMAD3-213ENST00000560175 NLRP13Q86W25 1043 aa18.67■□□□□ 0.58
SMAD3-213ENST00000560175 CD163L1Q9NR16 1453 aa18.66■□□□□ 0.58
SMAD3-213ENST00000560175 CCER1Q8TC90 406 aaPredicted RBP18.66■□□□□ 0.58
SMAD3-213ENST00000560175 GLI3P10071 1580 aa18.66■□□□□ 0.58
SMAD3-213ENST00000560175 MON2Q7Z3U7 1717 aa18.66■□□□□ 0.58
SMAD3-213ENST00000560175 NRKQ7Z2Y5 1582 aa18.65■□□□□ 0.58
SMAD3-213ENST00000560175 ONECUT3O60422 494 aaPredicted RBP18.65■□□□□ 0.58
SMAD3-213ENST00000560175 CPDO75976 1380 aa18.65■□□□□ 0.58
SMAD3-213ENST00000560175 USP47Q96K76 1375 aa18.65■□□□□ 0.58
SMAD3-213ENST00000560175 PIK3C2AO00443 1686 aa18.64■□□□□ 0.57
SMAD3-213ENST00000560175 NUTM2GQ5VZR2 741 aa18.64■□□□□ 0.57
SMAD3-213ENST00000560175 TTC21BQ7Z4L5 1316 aa18.64■□□□□ 0.57
SMAD3-213ENST00000560175 PLEKHG5O94827 1062 aa18.63■□□□□ 0.57
SMAD3-213ENST00000560175 GCP02774 474 aa18.63■□□□□ 0.57
SMAD3-213ENST00000560175 BTG4Q9NY30 223 aa18.63■□□□□ 0.57
SMAD3-213ENST00000560175 TTC21AQ8NDW8 1320 aa18.63■□□□□ 0.57
SMAD3-213ENST00000560175 KIAA0232Q92628 1395 aa18.63■□□□□ 0.57
SMAD3-213ENST00000560175 SLIT3O75094 1523 aa18.63■□□□□ 0.57
SMAD3-213ENST00000560175 SLC12A5Q9H2X9 1139 aa18.62■□□□□ 0.57
SMAD3-213ENST00000560175 KTN1Q86UP2 1357 aaKnown RBP18.61■□□□□ 0.57
SMAD3-213ENST00000560175 NINLQ9Y2I6 1382 aa18.61■□□□□ 0.57
SMAD3-213ENST00000560175 PRDM11Q9NQV5 511 aa18.61■□□□□ 0.57
SMAD3-213ENST00000560175 LMO7Q8WWI1 1683 aa18.6■□□□□ 0.57
SMAD3-213ENST00000560175 NLRP6P59044 892 aa18.6■□□□□ 0.57
SMAD3-213ENST00000560175 UPF1Q92900 1129 aaKnown RBP eCLIP18.6■□□□□ 0.57
SMAD3-213ENST00000560175 USP54Q70EL1 1684 aa18.6■□□□□ 0.57
SMAD3-213ENST00000560175 ZC3H6P61129 1189 aaKnown RBP18.59■□□□□ 0.57
SMAD3-213ENST00000560175 USP31Q70CQ4 1352 aa18.58■□□□□ 0.57
SMAD3-213ENST00000560175 CAMTA1Q9Y6Y1 1673 aa18.57■□□□□ 0.56
SMAD3-213ENST00000560175 TMF1P82094 1093 aa18.57■□□□□ 0.56
SMAD3-213ENST00000560175 TERF2IPQ9NYB0 399 aa18.57■□□□□ 0.56
SMAD3-213ENST00000560175 SPATA31A5Q5VU36 1347 aa18.56■□□□□ 0.56
SMAD3-213ENST00000560175 SPATA31A7Q8IWB4 1347 aa18.56■□□□□ 0.56
SMAD3-213ENST00000560175 COL18A1P39060 1754 aa18.56■□□□□ 0.56
SMAD3-213ENST00000560175 CHRNA2Q15822 529 aa18.56■□□□□ 0.56
SMAD3-213ENST00000560175 HDGFL2Q7Z4V5 671 aaPredicted RBP18.56■□□□□ 0.56
SMAD3-213ENST00000560175 TMC1Q8TDI8 760 aa18.56■□□□□ 0.56
SMAD3-213ENST00000560175 EDC4Q6P2E9 1401 aaKnown RBP18.56■□□□□ 0.56
SMAD3-213ENST00000560175 BRWD3Q6RI45 1802 aa18.56■□□□□ 0.56
SMAD3-213ENST00000560175 A0A1W2PP64 1363 aa18.55■□□□□ 0.56
SMAD3-213ENST00000560175 AATKQ6ZMQ8 1374 aa18.55■□□□□ 0.56
SMAD3-213ENST00000560175 EP400Q96L91 3159 aa18.54■□□□□ 0.56
SMAD3-213ENST00000560175 KCNH5Q8NCM2 988 aa18.54■□□□□ 0.56
SMAD3-213ENST00000560175 CDCA8Q53HL2 280 aa18.53■□□□□ 0.56
SMAD3-213ENST00000560175 ARHGEF25Q86VW2 580 aa18.53■□□□□ 0.56
SMAD3-213ENST00000560175 SPATA31A1Q5TZJ5 1347 aa18.52■□□□□ 0.56
SMAD3-213ENST00000560175 SEPT12Q8IYM1 358 aa18.52■□□□□ 0.56
SMAD3-213ENST00000560175 NFAT5O94916 1531 aa18.52■□□□□ 0.56
SMAD3-213ENST00000560175 ANKRD36BQ8N2N9 1353 aa18.51■□□□□ 0.55
SMAD3-213ENST00000560175 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.5■□□□□ 0.554e-6■■□□□ 13.1
SMAD3-213ENST00000560175 CCDC9Q9Y3X0 531 aaKnown RBP18.5■□□□□ 0.55
SMAD3-213ENST00000560175 COL5A2P05997 1499 aaPredicted RBP18.5■□□□□ 0.55
SMAD3-213ENST00000560175 THSD7AQ9UPZ6 1657 aa18.5■□□□□ 0.55
SMAD3-213ENST00000560175 NME9Q86XW9 330 aa18.49■□□□□ 0.55
SMAD3-213ENST00000560175 ZRANB1Q9UGI0 708 aa18.49■□□□□ 0.55
SMAD3-213ENST00000560175 FAM98CQ17RN3 349 aaKnown RBP18.48■□□□□ 0.55
SMAD3-213ENST00000560175 BARGINQ6ZT62 677 aa18.48■□□□□ 0.55
SMAD3-213ENST00000560175 AXIN2Q9Y2T1 843 aa18.48■□□□□ 0.55
SMAD3-213ENST00000560175 ABCC6O95255 1503 aa18.48■□□□□ 0.55
SMAD3-213ENST00000560175 OVOS2A0A0J9YW53 1432 aa18.48■□□□□ 0.55
SMAD3-213ENST00000560175 OVOS2Q6IE36 1432 aa18.48■□□□□ 0.55
SMAD3-213ENST00000560175 EVA1CP58658 441 aa18.47■□□□□ 0.55
SMAD3-213ENST00000560175 EIF4G2P78344 907 aaKnown RBP eCLIP18.47■□□□□ 0.551e-12■■■■■ 28.7
SMAD3-213ENST00000560175 LARP1Q6PKG0 1096 aaKnown RBP18.47■□□□□ 0.55
SMAD3-213ENST00000560175 RGPD5Q99666 1765 aa18.47■□□□□ 0.55
SMAD3-213ENST00000560175 MYOM1P52179 1685 aa18.47■□□□□ 0.55
SMAD3-213ENST00000560175 CCDC125Q86Z20 511 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 89.7 ms