RNA–Protein interactions for RNA: ENST00000560070.5

USP3-217, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-217ENST00000560070 ATP7BP35670 1465 aa11.95□□□□□ -0.5
USP3-217ENST00000560070 NLRP6P59044 892 aa11.94□□□□□ -0.5
USP3-217ENST00000560070 HDGFL2Q7Z4V5 671 aaPredicted RBP11.94□□□□□ -0.5
USP3-217ENST00000560070 QTRT2Q9H974 415 aaKnown RBP11.94□□□□□ -0.5
USP3-217ENST00000560070 LRP6O75581 1613 aa11.93□□□□□ -0.5
USP3-217ENST00000560070 FAM83GA6ND36 823 aa11.93□□□□□ -0.5
USP3-217ENST00000560070 SOX12O15370 315 aa11.93□□□□□ -0.5
USP3-217ENST00000560070 ZRANB1Q9UGI0 708 aa11.93□□□□□ -0.5
USP3-217ENST00000560070 ARHGEF28Q8N1W1 1705 aaKnown RBP11.93□□□□□ -0.5
USP3-217ENST00000560070 FMN2Q9NZ56 1722 aa11.93□□□□□ -0.5
USP3-217ENST00000560070 TNS3Q68CZ2 1445 aa11.93□□□□□ -0.5
USP3-217ENST00000560070 POLR3AO14802 1390 aaPredicted RBP11.92□□□□□ -0.5
USP3-217ENST00000560070 ARHGEF10O15013 1369 aa11.92□□□□□ -0.5
USP3-217ENST00000560070 ATAD2Q6PL18 1390 aa11.92□□□□□ -0.5
USP3-217ENST00000560070 ADGRB2O60241 1585 aa11.92□□□□□ -0.5
USP3-217ENST00000560070 MED1Q15648 1581 aaPredicted RBP11.92□□□□□ -0.5
USP3-217ENST00000560070 TTC21BQ7Z4L5 1316 aa11.92□□□□□ -0.5
USP3-217ENST00000560070 ZNF772Q68DY9 489 aaPredicted RBP11.92□□□□□ -0.5
USP3-217ENST00000560070 NLRP13Q86W25 1043 aa11.92□□□□□ -0.5
USP3-217ENST00000560070 TERF2IPQ9NYB0 399 aa11.92□□□□□ -0.5
USP3-217ENST00000560070 USP21Q9UK80 565 aa11.92□□□□□ -0.5
USP3-217ENST00000560070 KTN1Q86UP2 1357 aaKnown RBP11.92□□□□□ -0.5
USP3-217ENST00000560070 CHRNA2Q15822 529 aa11.91□□□□□ -0.5
USP3-217ENST00000560070 CDCA8Q53HL2 280 aa11.91□□□□□ -0.5
USP3-217ENST00000560070 POTEHQ6S545 545 aa11.91□□□□□ -0.5
USP3-217ENST00000560070 PUS7Q96PZ0 661 aaKnown RBP11.91□□□□□ -0.5
USP3-217ENST00000560070 SBNO2Q9Y2G9 1366 aa11.91□□□□□ -0.5
USP3-217ENST00000560070 USP32Q8NFA0 1604 aa11.9□□□□□ -0.5
USP3-217ENST00000560070 C11orf95C9JLR9 678 aaPredicted RBP11.9□□□□□ -0.5
USP3-217ENST00000560070 NME9Q86XW9 330 aa11.9□□□□□ -0.5
USP3-217ENST00000560070 GCP02774 474 aa11.89□□□□□ -0.51
USP3-217ENST00000560070 RXRBP28702 533 aa11.89□□□□□ -0.51
USP3-217ENST00000560070 CCDC9Q9Y3X0 531 aaKnown RBP11.89□□□□□ -0.51
USP3-217ENST00000560070 FNBP4Q8N3X1 1017 aaPredicted RBP11.88□□□□□ -0.51
USP3-217ENST00000560070 PRDM11Q9NQV5 511 aa11.88□□□□□ -0.51
USP3-217ENST00000560070 NHSL1Q5SYE7 1610 aa11.88□□□□□ -0.51
USP3-217ENST00000560070 USP6P35125 1406 aa11.87□□□□□ -0.51
USP3-217ENST00000560070 BTG4Q9NY30 223 aa11.87□□□□□ -0.51
USP3-217ENST00000560070 QRICH2Q9H0J4 1663 aa11.87□□□□□ -0.51
USP3-217ENST00000560070 HOXD11P31277 338 aaPredicted RBP11.86□□□□□ -0.51
USP3-217ENST00000560070 EVA1CP58658 441 aa11.86□□□□□ -0.51
USP3-217ENST00000560070 UNC5CLQ8IV45 518 aa11.86□□□□□ -0.51
USP3-217ENST00000560070 STRN4Q9NRL3 753 aa11.86□□□□□ -0.51
USP3-217ENST00000560070 TRPC5Q9UL62 973 aaPredicted RBP11.86□□□□□ -0.51
USP3-217ENST00000560070 CPSF1Q10570 1443 aaKnown RBP11.86□□□□□ -0.51
USP3-217ENST00000560070 CARD14Q9BXL6 1004 aa11.85□□□□□ -0.51
USP3-217ENST00000560070 TTC21AQ8NDW8 1320 aa11.85□□□□□ -0.51
USP3-217ENST00000560070 KIF1AQ12756 1690 aa11.84□□□□□ -0.51
USP3-217ENST00000560070 A0A1W2PP64 1363 aa11.84□□□□□ -0.51
USP3-217ENST00000560070 KIAA0232Q92628 1395 aa11.84□□□□□ -0.51
USP3-217ENST00000560070 FBLN1P23142 703 aa11.84□□□□□ -0.51
USP3-217ENST00000560070 GGNBP2Q9H3C7 697 aa11.84□□□□□ -0.51
USP3-217ENST00000560070 BRD4O60885 1362 aaPredicted RBP11.83□□□□□ -0.52
USP3-217ENST00000560070 RGPD8O14715 1765 aaPredicted RBP11.83□□□□□ -0.52
USP3-217ENST00000560070 RBM6P78332 1123 aaKnown RBP11.83□□□□□ -0.52
USP3-217ENST00000560070 CNGB1Q14028 1251 aaPredicted RBP11.83□□□□□ -0.52
USP3-217ENST00000560070 PANK3Q9H999 370 aa11.83□□□□□ -0.52
USP3-217ENST00000560070 SSH2Q76I76 1423 aa11.83□□□□□ -0.52
USP3-217ENST00000560070 FYB1O15117 783 aa11.82□□□□□ -0.52
USP3-217ENST00000560070 KCNH5Q8NCM2 988 aa11.82□□□□□ -0.52
USP3-217ENST00000560070 COG3Q96JB2 828 aa11.82□□□□□ -0.52
USP3-217ENST00000560070 GJD4Q96KN9 370 aaPredicted RBP11.82□□□□□ -0.52
USP3-217ENST00000560070 USP35Q9P2H5 1018 aa11.82□□□□□ -0.52
USP3-217ENST00000560070 USP19O94966 1318 aa11.82□□□□□ -0.52
USP3-217ENST00000560070 CD163L1Q9NR16 1453 aa11.82□□□□□ -0.52
USP3-217ENST00000560070 SHPRHQ149N8 1683 aa11.81□□□□□ -0.52
USP3-217ENST00000560070 A0A0G2JS52 829 aa11.81□□□□□ -0.52
USP3-217ENST00000560070 MYT1Q01538 1121 aa11.81□□□□□ -0.52
USP3-217ENST00000560070 ANKRD36BQ8N2N9 1353 aa11.8□□□□□ -0.52
USP3-217ENST00000560070 VPS72Q15906 364 aa11.8□□□□□ -0.52
USP3-217ENST00000560070 AXIN2Q9Y2T1 843 aa11.8□□□□□ -0.52
USP3-217ENST00000560070 BCL9LQ86UU0 1499 aa11.8□□□□□ -0.52
USP3-217ENST00000560070 KIF7Q2M1P5 1343 aa11.8□□□□□ -0.52
USP3-217ENST00000560070 NINLQ9Y2I6 1382 aa11.79□□□□□ -0.52
USP3-217ENST00000560070 EDC4Q6P2E9 1401 aaKnown RBP11.79□□□□□ -0.52
USP3-217ENST00000560070 TNNT2P45379 298 aaPredicted RBP11.79□□□□□ -0.52
USP3-217ENST00000560070 FAM98CQ17RN3 349 aaKnown RBP11.79□□□□□ -0.52
USP3-217ENST00000560070 LARP1Q6PKG0 1096 aaKnown RBP11.79□□□□□ -0.52
USP3-217ENST00000560070 ARHGEF25Q86VW2 580 aa11.79□□□□□ -0.52
USP3-217ENST00000560070 SOCS7O14512 581 aa11.78□□□□□ -0.52
USP3-217ENST00000560070 CSB-PGBD3P0DP91 1061 aa11.78□□□□□ -0.52
USP3-217ENST00000560070 LTV1Q96GA3 475 aaPredicted RBP11.78□□□□□ -0.52
USP3-217ENST00000560070 RRS1Q15050 365 aaKnown RBP11.77□□□□□ -0.53
USP3-217ENST00000560070 SEPT12Q8IYM1 358 aa11.77□□□□□ -0.53
USP3-217ENST00000560070 USP31Q70CQ4 1352 aa11.77□□□□□ -0.53
USP3-217ENST00000560070 ATRNO75882 1429 aa11.77□□□□□ -0.53
USP3-217ENST00000560070 NSD3Q9BZ95 1437 aa11.77□□□□□ -0.53
USP3-217ENST00000560070 SLIT2O94813 1529 aa11.76□□□□□ -0.53
USP3-217ENST00000560070 PPM1GO15355 546 aaPredicted RBP11.76□□□□□ -0.53
USP3-217ENST00000560070 AMPHP49418 695 aa11.76□□□□□ -0.53
USP3-217ENST00000560070 TOM1L2Q6ZVM7 507 aa11.76□□□□□ -0.53
USP3-217ENST00000560070 KNSTRNQ9Y448 316 aa11.76□□□□□ -0.53
USP3-217ENST00000560070 COL22A1Q8NFW1 1626 aaPredicted RBP11.75□□□□□ -0.53
USP3-217ENST00000560070 TOPAZ1Q8N9V7 1692 aa11.75□□□□□ -0.53
USP3-217ENST00000560070 TRPM3Q9HCF6 1732 aaPredicted RBP11.75□□□□□ -0.53
USP3-217ENST00000560070 ZEB1P37275 1124 aaPredicted RBP11.75□□□□□ -0.53
USP3-217ENST00000560070 WASHC2AQ641Q2 1341 aa11.75□□□□□ -0.53
USP3-217ENST00000560070 CPDO75976 1380 aa11.75□□□□□ -0.53
USP3-217ENST00000560070 NLRP2Q9NX02 1062 aa11.74□□□□□ -0.53
USP3-217ENST00000560070 CGNL1Q0VF96 1302 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms