RNA–Protein interactions for RNA: ENST00000560055.5

RPL28-209, Transcript of ribosomal protein L28, humanhuman

TSL 3 BASIC

Gene RPL28, Length 670 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPL28-209ENST00000560055 SSH2Q76I76 1423 aa23.58■■□□□ 1.36
RPL28-209ENST00000560055 CD163L1Q9NR16 1453 aa23.57■■□□□ 1.36
RPL28-209ENST00000560055 NINLQ9Y2I6 1382 aa23.56■■□□□ 1.36
RPL28-209ENST00000560055 CDCA8Q53HL2 280 aa23.55■■□□□ 1.36
RPL28-209ENST00000560055 ZNF692Q9BU19 519 aaPredicted RBP23.55■■□□□ 1.36
RPL28-209ENST00000560055 SLC12A5Q9H2X9 1139 aa23.55■■□□□ 1.36
RPL28-209ENST00000560055 AKAP12Q02952 1782 aa23.55■■□□□ 1.36
RPL28-209ENST00000560055 ZNF772Q68DY9 489 aaPredicted RBP23.54■■□□□ 1.36
RPL28-209ENST00000560055 PAK3O75914 559 aaPredicted RBP23.53■■□□□ 1.36
RPL28-209ENST00000560055 TMC1Q8TDI8 760 aa23.53■■□□□ 1.36
RPL28-209ENST00000560055 LMOD2Q6P5Q4 547 aa23.52■■□□□ 1.36
RPL28-209ENST00000560055 AFF2P51816 1311 aa23.52■■□□□ 1.36
RPL28-209ENST00000560055 NRKQ7Z2Y5 1582 aa23.5■■□□□ 1.35
RPL28-209ENST00000560055 C8orf37Q96NL8 207 aa23.5■■□□□ 1.35
RPL28-209ENST00000560055 A0A1W2PP64 1363 aa23.5■■□□□ 1.35
RPL28-209ENST00000560055 KTN1Q86UP2 1357 aaKnown RBP23.5■■□□□ 1.35
RPL28-209ENST00000560055 MON2Q7Z3U7 1717 aa23.5■■□□□ 1.35
RPL28-209ENST00000560055 CABLES1Q8TDN4 633 aa23.49■■□□□ 1.35
RPL28-209ENST00000560055 ABCA3Q99758 1704 aa23.49■■□□□ 1.35
RPL28-209ENST00000560055 ADAMTS2O95450 1211 aa23.48■■□□□ 1.35
RPL28-209ENST00000560055 TERF2IPQ9NYB0 399 aa23.48■■□□□ 1.35
RPL28-209ENST00000560055 CRYBG1Q9Y4K1 1723 aa23.47■■□□□ 1.35
RPL28-209ENST00000560055 HDGFL2Q7Z4V5 671 aaPredicted RBP23.47■■□□□ 1.35
RPL28-209ENST00000560055 ABTB2Q8N961 1025 aa23.47■■□□□ 1.35
RPL28-209ENST00000560055 TTC21BQ7Z4L5 1316 aa23.47■■□□□ 1.35
RPL28-209ENST00000560055 ANKRD36BQ8N2N9 1353 aa23.46■■□□□ 1.35
RPL28-209ENST00000560055 MYOM1P52179 1685 aa23.45■■□□□ 1.34
RPL28-209ENST00000560055 TTC21AQ8NDW8 1320 aa23.45■■□□□ 1.34
RPL28-209ENST00000560055 PIK3C2AO00443 1686 aa23.44■■□□□ 1.34
RPL28-209ENST00000560055 EDC4Q6P2E9 1401 aaKnown RBP23.44■■□□□ 1.34
RPL28-209ENST00000560055 USP19O94966 1318 aa23.44■■□□□ 1.34
RPL28-209ENST00000560055 C11orf95C9JLR9 678 aaPredicted RBP23.44■■□□□ 1.34
RPL28-209ENST00000560055 RXRBP28702 533 aa23.43■■□□□ 1.34
RPL28-209ENST00000560055 NUTM2GQ5VZR2 741 aa23.43■■□□□ 1.34
RPL28-209ENST00000560055 MARF1Q9Y4F3 1742 aaKnown RBP23.42■■□□□ 1.34
RPL28-209ENST00000560055 PLEKHG5O94827 1062 aa23.41■■□□□ 1.34
RPL28-209ENST00000560055 NLRP13Q86W25 1043 aa23.41■■□□□ 1.34
RPL28-209ENST00000560055 NGLY1Q96IV0 654 aa23.41■■□□□ 1.34
RPL28-209ENST00000560055 PHRF1Q9P1Y6 1649 aaKnown RBP23.41■■□□□ 1.34
RPL28-209ENST00000560055 HAP1P54257 671 aaPredicted RBP23.4■■□□□ 1.34
RPL28-209ENST00000560055 FNBP4Q8N3X1 1017 aaPredicted RBP23.4■■□□□ 1.34
RPL28-209ENST00000560055 QTRT2Q9H974 415 aaKnown RBP23.39■■□□□ 1.33
RPL28-209ENST00000560055 SLIT3O75094 1523 aa23.38■■□□□ 1.33
RPL28-209ENST00000560055 NLRP6P59044 892 aa23.38■■□□□ 1.33
RPL28-209ENST00000560055 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.38■■□□□ 1.33
RPL28-209ENST00000560055 USP31Q70CQ4 1352 aa23.38■■□□□ 1.33
RPL28-209ENST00000560055 KIF7Q2M1P5 1343 aa23.36■■□□□ 1.33
RPL28-209ENST00000560055 USP54Q70EL1 1684 aa23.36■■□□□ 1.33
RPL28-209ENST00000560055 NME9Q86XW9 330 aa23.36■■□□□ 1.33
RPL28-209ENST00000560055 SLIT2O94813 1529 aa23.36■■□□□ 1.33
RPL28-209ENST00000560055 GCP02774 474 aa23.35■■□□□ 1.33
RPL28-209ENST00000560055 FAM83GA6ND36 823 aa23.34■■□□□ 1.33
RPL28-209ENST00000560055 POLR3GLQ9BT43 218 aa23.34■■□□□ 1.33
RPL28-209ENST00000560055 CARD14Q9BXL6 1004 aa23.34■■□□□ 1.33
RPL28-209ENST00000560055 BCL9LQ86UU0 1499 aa23.34■■□□□ 1.33
RPL28-209ENST00000560055 CDK12Q9NYV4 1490 aaPredicted RBP23.34■■□□□ 1.33
RPL28-209ENST00000560055 CPDO75976 1380 aa23.33■■□□□ 1.33
RPL28-209ENST00000560055 KIAA0232Q92628 1395 aa23.33■■□□□ 1.33
RPL28-209ENST00000560055 ZEB1P37275 1124 aaPredicted RBP23.33■■□□□ 1.33
RPL28-209ENST00000560055 ZRANB1Q9UGI0 708 aa23.33■■□□□ 1.33
RPL28-209ENST00000560055 USP21Q9UK80 565 aa23.33■■□□□ 1.33
RPL28-209ENST00000560055 OVOS2A0A0J9YW53 1432 aa23.33■■□□□ 1.32
RPL28-209ENST00000560055 OVOS2Q6IE36 1432 aa23.33■■□□□ 1.32
RPL28-209ENST00000560055 RBM6P78332 1123 aaKnown RBP23.32■■□□□ 1.32
RPL28-209ENST00000560055 RGS12O14924 1447 aa23.32■■□□□ 1.32
RPL28-209ENST00000560055 COL14A1Q05707 1796 aaKnown RBP23.3■■□□□ 1.32
RPL28-209ENST00000560055 ZC3H6P61129 1189 aaKnown RBP23.3■■□□□ 1.32
RPL28-209ENST00000560055 UPF1Q92900 1129 aaKnown RBP eCLIP23.3■■□□□ 1.323e-7■■■■■ 30
RPL28-209ENST00000560055 PRDM11Q9NQV5 511 aa23.3■■□□□ 1.32
RPL28-209ENST00000560055 NSD3Q9BZ95 1437 aa23.3■■□□□ 1.32
RPL28-209ENST00000560055 CCDC7Q96M83 1385 aa23.29■■□□□ 1.32
RPL28-209ENST00000560055 PLCH1Q4KWH8 1693 aa23.29■■□□□ 1.32
RPL28-209ENST00000560055 WASHC2AQ641Q2 1341 aa23.29■■□□□ 1.32
RPL28-209ENST00000560055 NFAT5O94916 1531 aa23.28■■□□□ 1.32
RPL28-209ENST00000560055 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.28■■□□□ 1.32
RPL28-209ENST00000560055 NWD2Q9ULI1 1742 aa23.28■■□□□ 1.32
RPL28-209ENST00000560055 ATRNO75882 1429 aa23.27■■□□□ 1.32
RPL28-209ENST00000560055 FYB1O15117 783 aa23.27■■□□□ 1.32
RPL28-209ENST00000560055 UNC5CLQ8IV45 518 aa23.27■■□□□ 1.32
RPL28-209ENST00000560055 KCNH5Q8NCM2 988 aa23.27■■□□□ 1.32
RPL28-209ENST00000560055 PANK3Q9H999 370 aa23.26■■□□□ 1.31
RPL28-209ENST00000560055 TRPC5Q9UL62 973 aaPredicted RBP23.26■■□□□ 1.31
RPL28-209ENST00000560055 CHRNA2Q15822 529 aa23.25■■□□□ 1.31
RPL28-209ENST00000560055 LMO7Q8WWI1 1683 aa23.25■■□□□ 1.31
RPL28-209ENST00000560055 NRAPQ86VF7 1730 aa23.25■■□□□ 1.31
RPL28-209ENST00000560055 ARHGEF25Q86VW2 580 aa23.24■■□□□ 1.31
RPL28-209ENST00000560055 BTG4Q9NY30 223 aa23.24■■□□□ 1.31
RPL28-209ENST00000560055 COG3Q96JB2 828 aa23.23■■□□□ 1.31
RPL28-209ENST00000560055 AATKQ6ZMQ8 1374 aa23.23■■□□□ 1.31
RPL28-209ENST00000560055 GGNBP2Q9H3C7 697 aa23.22■■□□□ 1.31
RPL28-209ENST00000560055 KIF20BQ96Q89 1820 aa23.22■■□□□ 1.31
RPL28-209ENST00000560055 SOX12O15370 315 aa23.21■■□□□ 1.31
RPL28-209ENST00000560055 CGNL1Q0VF96 1302 aa23.21■■□□□ 1.31
RPL28-209ENST00000560055 CAMTA1Q9Y6Y1 1673 aa23.21■■□□□ 1.31
RPL28-209ENST00000560055 COL18A1P39060 1754 aa23.2■■□□□ 1.3
RPL28-209ENST00000560055 VPS72Q15906 364 aa23.2■■□□□ 1.3
RPL28-209ENST00000560055 ABCC6O95255 1503 aa23.18■■□□□ 1.3
RPL28-209ENST00000560055 GJD4Q96KN9 370 aaPredicted RBP23.17■■□□□ 1.3
RPL28-209ENST00000560055 COL5A2P05997 1499 aaPredicted RBP23.16■■□□□ 1.3
RPL28-209ENST00000560055 GLI3P10071 1580 aa23.15■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms