RNA–Protein interactions for RNA: ENST00000559397.5

TPM1-219, Transcript of tropomyosin 1, humanhuman

TSL 2 BASIC

Gene TPM1, Length 1,655 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-219ENST00000559397 NSD3Q9BZ95 1437 aa22.65■■□□□ 1.22
TPM1-219ENST00000559397 TRPM3Q9HCF6 1732 aaPredicted RBP22.65■■□□□ 1.22
TPM1-219ENST00000559397 SCAF1Q9H7N4 1312 aaKnown RBP22.64■■□□□ 1.21
TPM1-219ENST00000559397 SOS2Q07890 1332 aaPredicted RBP22.63■■□□□ 1.21
TPM1-219ENST00000559397 XPCQ01831 940 aaPredicted RBP22.63■■□□□ 1.21
TPM1-219ENST00000559397 BRD4O60885 1362 aaPredicted RBP22.63■■□□□ 1.21
TPM1-219ENST00000559397 TTC21BQ7Z4L5 1316 aa22.62■■□□□ 1.21
TPM1-219ENST00000559397 SBNO1A3KN83 1393 aa22.6■■□□□ 1.21
TPM1-219ENST00000559397 PHLPP1O60346 1717 aa22.58■■□□□ 1.21
TPM1-219ENST00000559397 TTC21AQ8NDW8 1320 aa22.58■■□□□ 1.21
TPM1-219ENST00000559397 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.58■■□□□ 1.2
TPM1-219ENST00000559397 KNSTRNQ9Y448 316 aa22.58■■□□□ 1.2
TPM1-219ENST00000559397 AMER1Q5JTC6 1135 aaPredicted RBP22.57■■□□□ 1.2
TPM1-219ENST00000559397 PRKRIP1Q9H875 184 aaPredicted RBP22.57■■□□□ 1.2
TPM1-219ENST00000559397 ALS2Q96Q42 1657 aa22.57■■□□□ 1.2
TPM1-219ENST00000559397 COL16A1Q07092 1604 aaPredicted RBP22.56■■□□□ 1.2
TPM1-219ENST00000559397 PIK3C2AO00443 1686 aa22.56■■□□□ 1.2
TPM1-219ENST00000559397 PAK3O75914 559 aaPredicted RBP22.56■■□□□ 1.2
TPM1-219ENST00000559397 KIF20BQ96Q89 1820 aa22.55■■□□□ 1.2
TPM1-219ENST00000559397 SPATA31A3Q5VYP0 1347 aa22.55■■□□□ 1.2
TPM1-219ENST00000559397 TNS3Q68CZ2 1445 aa22.55■■□□□ 1.2
TPM1-219ENST00000559397 FYB1O15117 783 aa22.55■■□□□ 1.2
TPM1-219ENST00000559397 CGNL1Q0VF96 1302 aa22.55■■□□□ 1.2
TPM1-219ENST00000559397 NME9Q86XW9 330 aa22.54■■□□□ 1.2
TPM1-219ENST00000559397 ABTB2Q8N961 1025 aa22.52■■□□□ 1.2
TPM1-219ENST00000559397 NPC1L1Q9UHC9 1359 aa22.52■■□□□ 1.2
TPM1-219ENST00000559397 USP31Q70CQ4 1352 aa22.52■■□□□ 1.2
TPM1-219ENST00000559397 ZRANB1Q9UGI0 708 aa22.52■■□□□ 1.2
TPM1-219ENST00000559397 USP54Q70EL1 1684 aa22.51■■□□□ 1.19
TPM1-219ENST00000559397 LRRC59Q96AG4 307 aaKnown RBP22.51■■□□□ 1.19
TPM1-219ENST00000559397 MARF1Q9Y4F3 1742 aaKnown RBP22.5■■□□□ 1.19
TPM1-219ENST00000559397 NSD2O96028 1365 aa22.5■■□□□ 1.19
TPM1-219ENST00000559397 GGNBP2Q9H3C7 697 aa22.5■■□□□ 1.19
TPM1-219ENST00000559397 ANKRD26Q9UPS8 1709 aa22.49■■□□□ 1.19
TPM1-219ENST00000559397 FBXO41Q8TF61 875 aa22.49■■□□□ 1.19
TPM1-219ENST00000559397 YTHDC1Q96MU7 727 aaKnown RBP22.49■■□□□ 1.19
TPM1-219ENST00000559397 OVOS2A0A0J9YW53 1432 aa22.49■■□□□ 1.19
TPM1-219ENST00000559397 OVOS2Q6IE36 1432 aa22.49■■□□□ 1.19
TPM1-219ENST00000559397 ARHGEF10O15013 1369 aa22.49■■□□□ 1.19
TPM1-219ENST00000559397 HSPA1LP34931 641 aa22.48■■□□□ 1.19
TPM1-219ENST00000559397 LMOD2Q6P5Q4 547 aa22.48■■□□□ 1.19
TPM1-219ENST00000559397 NLRP6P59044 892 aa22.47■■□□□ 1.19
TPM1-219ENST00000559397 CC2D1BQ5T0F9 858 aaKnown RBP22.47■■□□□ 1.19
TPM1-219ENST00000559397 NUTM2GQ5VZR2 741 aa22.47■■□□□ 1.19
TPM1-219ENST00000559397 PNPLA6Q8IY17 1366 aa22.45■■□□□ 1.18
TPM1-219ENST00000559397 MED1Q15648 1581 aaPredicted RBP22.45■■□□□ 1.18
TPM1-219ENST00000559397 CENPBP07199 599 aaPredicted RBP22.45■■□□□ 1.18
TPM1-219ENST00000559397 NLRP13Q86W25 1043 aa22.45■■□□□ 1.18
TPM1-219ENST00000559397 COG3Q96JB2 828 aa22.45■■□□□ 1.18
TPM1-219ENST00000559397 COL22A1Q8NFW1 1626 aaPredicted RBP22.44■■□□□ 1.18
TPM1-219ENST00000559397 CRYBG1Q9Y4K1 1723 aa22.44■■□□□ 1.18
TPM1-219ENST00000559397 USP19O94966 1318 aa22.44■■□□□ 1.18
TPM1-219ENST00000559397 CNGB1Q14028 1251 aaPredicted RBP22.43■■□□□ 1.18
TPM1-219ENST00000559397 SLIT3O75094 1523 aa22.43■■□□□ 1.18
TPM1-219ENST00000559397 SHPRHQ149N8 1683 aa22.42■■□□□ 1.18
TPM1-219ENST00000559397 MORC1Q86VD1 984 aa22.41■■□□□ 1.18
TPM1-219ENST00000559397 PHRF1Q9P1Y6 1649 aaKnown RBP22.41■■□□□ 1.18
TPM1-219ENST00000559397 PARD3Q8TEW0 1356 aa22.4■■□□□ 1.18
TPM1-219ENST00000559397 JCADQ9P266 1359 aa22.4■■□□□ 1.18
TPM1-219ENST00000559397 ABCA3Q99758 1704 aa22.4■■□□□ 1.18
TPM1-219ENST00000559397 RALBP1Q15311 655 aa22.39■■□□□ 1.18
TPM1-219ENST00000559397 CABLES1Q8TDN4 633 aa22.39■■□□□ 1.17
TPM1-219ENST00000559397 PLEKHG5O94827 1062 aa22.37■■□□□ 1.17
TPM1-219ENST00000559397 CCDC184Q52MB2 194 aa22.37■■□□□ 1.17
TPM1-219ENST00000559397 NFAT5O94916 1531 aa22.37■■□□□ 1.17
TPM1-219ENST00000559397 GCP02774 474 aa22.36■■□□□ 1.17
TPM1-219ENST00000559397 FBLN1P23142 703 aa22.36■■□□□ 1.17
TPM1-219ENST00000559397 KCNH5Q8NCM2 988 aa22.36■■□□□ 1.17
TPM1-219ENST00000559397 TNNT2P45379 298 aaPredicted RBP22.35■■□□□ 1.17
TPM1-219ENST00000559397 AATKQ6ZMQ8 1374 aa22.35■■□□□ 1.17
TPM1-219ENST00000559397 SOX12O15370 315 aa22.33■■□□□ 1.17
TPM1-219ENST00000559397 MAP2P11137 1827 aaKnown RBP22.32■■□□□ 1.16
TPM1-219ENST00000559397 MYBBP1AQ9BQG0 1328 aaKnown RBP22.32■■□□□ 1.16
TPM1-219ENST00000559397 MRS2Q9HD23 443 aa22.32■■□□□ 1.16
TPM1-219ENST00000559397 PPP2R1AP30153 589 aa22.3■■□□□ 1.16
TPM1-219ENST00000559397 SPATA31A6Q5VVP1 1343 aa22.3■■□□□ 1.16
TPM1-219ENST00000559397 RRS1Q15050 365 aaKnown RBP22.3■■□□□ 1.16
TPM1-219ENST00000559397 ARHGEF25Q86VW2 580 aa22.3■■□□□ 1.16
TPM1-219ENST00000559397 POLKQ9UBT6 870 aa22.3■■□□□ 1.16
TPM1-219ENST00000559397 LTN1O94822 1766 aa22.29■■□□□ 1.16
TPM1-219ENST00000559397 CPDO75976 1380 aa22.28■■□□□ 1.16
TPM1-219ENST00000559397 MAP3K19Q56UN5 1328 aa22.28■■□□□ 1.16
TPM1-219ENST00000559397 HAP1P54257 671 aaPredicted RBP22.28■■□□□ 1.16
TPM1-219ENST00000559397 ZC3H6P61129 1189 aaKnown RBP22.28■■□□□ 1.16
TPM1-219ENST00000559397 SMG6Q86US8 1419 aaKnown RBP22.28■■□□□ 1.16
TPM1-219ENST00000559397 KIAA0232Q92628 1395 aa22.27■■□□□ 1.16
TPM1-219ENST00000559397 EMILIN1Q9Y6C2 1016 aa22.26■■□□□ 1.15
TPM1-219ENST00000559397 PEAK1Q9H792 1746 aa22.26■■□□□ 1.15
TPM1-219ENST00000559397 NUTM2BA6NNL0 878 aaPredicted RBP22.26■■□□□ 1.15
TPM1-219ENST00000559397 NUTM2EB1AL46 878 aaPredicted RBP22.26■■□□□ 1.15
TPM1-219ENST00000559397 NUTM2AQ8IVF1 878 aaPredicted RBP22.26■■□□□ 1.15
TPM1-219ENST00000559397 LRP6O75581 1613 aa22.25■■□□□ 1.15
TPM1-219ENST00000559397 COL18A1P39060 1754 aa22.25■■□□□ 1.15
TPM1-219ENST00000559397 MTHFSP49914 203 aa22.24■■□□□ 1.15
TPM1-219ENST00000559397 KIF24Q5T7B8 1368 aa22.23■■□□□ 1.15
TPM1-219ENST00000559397 ADAMTS2O95450 1211 aa22.22■■□□□ 1.15
TPM1-219ENST00000559397 RTL1A6NKG5 1358 aa22.21■■□□□ 1.15
TPM1-219ENST00000559397 FAM83GA6ND36 823 aa22.21■■□□□ 1.15
TPM1-219ENST00000559397 CHRNA2Q15822 529 aa22.21■■□□□ 1.15
TPM1-219ENST00000559397 IP6K1Q92551 441 aa22.21■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms