RNA–Protein interactions for RNA: ENST00000558868.5

TPM1-215, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 653 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-215ENST00000558868 FMN2Q9NZ56 1722 aa18.33■□□□□ 0.52
TPM1-215ENST00000558868 ADGRL3Q9HAR2 1447 aa18.32■□□□□ 0.52
TPM1-215ENST00000558868 PDE3BQ13370 1112 aa18.32■□□□□ 0.52
TPM1-215ENST00000558868 NKTRP30414 1462 aaKnown RBP18.32■□□□□ 0.52
TPM1-215ENST00000558868 NGEFQ8N5V2 710 aa18.31■□□□□ 0.52
TPM1-215ENST00000558868 COG3Q96JB2 828 aa18.31■□□□□ 0.52
TPM1-215ENST00000558868 NUTM2FA1L443 756 aa18.3■□□□□ 0.52
TPM1-215ENST00000558868 HSPA1LP34931 641 aa18.3■□□□□ 0.52
TPM1-215ENST00000558868 USP6P35125 1406 aa18.3■□□□□ 0.52
TPM1-215ENST00000558868 NALCNQ8IZF0 1738 aa18.29■□□□□ 0.52
TPM1-215ENST00000558868 TTC21BQ7Z4L5 1316 aa18.29■□□□□ 0.52
TPM1-215ENST00000558868 TTC21AQ8NDW8 1320 aa18.29■□□□□ 0.52
TPM1-215ENST00000558868 NGDNQ8NEJ9 315 aaKnown RBP18.29■□□□□ 0.52
TPM1-215ENST00000558868 NUDCQ9Y266 331 aa18.29■□□□□ 0.52
TPM1-215ENST00000558868 SMG6Q86US8 1419 aaKnown RBP18.29■□□□□ 0.52
TPM1-215ENST00000558868 AATKQ6ZMQ8 1374 aa18.28■□□□□ 0.52
TPM1-215ENST00000558868 NRKQ7Z2Y5 1582 aa18.27■□□□□ 0.52
TPM1-215ENST00000558868 NEFLP07196 543 aa18.27■□□□□ 0.52
TPM1-215ENST00000558868 C14orf37Q86TY3 774 aa18.27■□□□□ 0.52
TPM1-215ENST00000558868 PROSER2Q86WR7 435 aaPredicted RBP18.27■□□□□ 0.52
TPM1-215ENST00000558868 NME9Q86XW9 330 aa18.27■□□□□ 0.52
TPM1-215ENST00000558868 NCOA3Q9Y6Q9 1424 aa18.26■□□□□ 0.51
TPM1-215ENST00000558868 SHPRHQ149N8 1683 aa18.25■□□□□ 0.51
TPM1-215ENST00000558868 SSH2Q76I76 1423 aa18.24■□□□□ 0.51
TPM1-215ENST00000558868 PMFBP1Q8TBY8 1022 aa18.24■□□□□ 0.51
TPM1-215ENST00000558868 PNPLA6Q8IY17 1366 aa18.24■□□□□ 0.51
TPM1-215ENST00000558868 RGPD8O14715 1765 aaPredicted RBP18.23■□□□□ 0.51
TPM1-215ENST00000558868 PHF8Q9UPP1 1060 aa18.23■□□□□ 0.51
TPM1-215ENST00000558868 RUNDC1Q96C34 613 aa18.22■□□□□ 0.51
TPM1-215ENST00000558868 PNNQ9H307 717 aaKnown RBP18.22■□□□□ 0.51
TPM1-215ENST00000558868 COL3A1P02461 1466 aaPredicted RBP18.21■□□□□ 0.51
TPM1-215ENST00000558868 DIAPH1O60610 1272 aaKnown RBP18.21■□□□□ 0.51
TPM1-215ENST00000558868 C19orf44Q9H6X5 657 aa18.21■□□□□ 0.51
TPM1-215ENST00000558868 POLKQ9UBT6 870 aa18.21■□□□□ 0.51
TPM1-215ENST00000558868 USP31Q70CQ4 1352 aa18.2■□□□□ 0.5
TPM1-215ENST00000558868 NCBP3Q53F19 620 aaKnown RBP18.2■□□□□ 0.5
TPM1-215ENST00000558868 OVOS2A0A0J9YW53 1432 aa18.2■□□□□ 0.5
TPM1-215ENST00000558868 OVOS2Q6IE36 1432 aa18.2■□□□□ 0.5
TPM1-215ENST00000558868 CDK12Q9NYV4 1490 aaPredicted RBP18.2■□□□□ 0.5
TPM1-215ENST00000558868 U2AF1L5P0DN76 240 aaPredicted RBP18.19■□□□□ 0.5
TPM1-215ENST00000558868 U2AF1Q01081 240 aaKnown RBP eCLIP18.19■□□□□ 0.5
TPM1-215ENST00000558868 CCDC146Q8IYE0 955 aa18.19■□□□□ 0.5
TPM1-215ENST00000558868 SALL2Q9Y467 1007 aaPredicted RBP18.19■□□□□ 0.5
TPM1-215ENST00000558868 DCCP43146 1447 aa18.18■□□□□ 0.5
TPM1-215ENST00000558868 ZRANB1Q9UGI0 708 aa18.18■□□□□ 0.5
TPM1-215ENST00000558868 MAP2P11137 1827 aaKnown RBP18.18■□□□□ 0.5
TPM1-215ENST00000558868 APAF1O14727 1248 aa18.17■□□□□ 0.5
TPM1-215ENST00000558868 RBM33Q96EV2 1170 aaKnown RBP18.17■□□□□ 0.5
TPM1-215ENST00000558868 SUPT16HQ9Y5B9 1047 aaKnown RBP18.17■□□□□ 0.5
TPM1-215ENST00000558868 U2SURPO15042 1029 aaKnown RBP18.16■□□□□ 0.5
TPM1-215ENST00000558868 ESCO1Q5FWF5 840 aa18.16■□□□□ 0.5
TPM1-215ENST00000558868 LRRC7Q96NW7 1537 aa18.15■□□□□ 0.5
TPM1-215ENST00000558868 SENP3-EIF4A1A0A087X0R7 540 aa18.15■□□□□ 0.5
TPM1-215ENST00000558868 PPM1GO15355 546 aaPredicted RBP18.15■□□□□ 0.5
TPM1-215ENST00000558868 ATF3P18847 181 aa18.15■□□□□ 0.5
TPM1-215ENST00000558868 TMEM94Q12767 1356 aa18.15■□□□□ 0.5
TPM1-215ENST00000558868 GOLGA2Q08379 1002 aa18.14■□□□□ 0.49
TPM1-215ENST00000558868 ZNF521Q96K83 1311 aa18.14■□□□□ 0.49
TPM1-215ENST00000558868 ZNF335Q9H4Z2 1342 aaPredicted RBP18.14■□□□□ 0.49
TPM1-215ENST00000558868 KIF1AQ12756 1690 aa18.13■□□□□ 0.49
TPM1-215ENST00000558868 USP54Q70EL1 1684 aa18.13■□□□□ 0.49
TPM1-215ENST00000558868 PIP4K2BP78356 416 aa18.13■□□□□ 0.49
TPM1-215ENST00000558868 PSME1Q06323 249 aa18.13■□□□□ 0.49
TPM1-215ENST00000558868 EMILIN1Q9Y6C2 1016 aa18.13■□□□□ 0.49
TPM1-215ENST00000558868 FCHSD2O94868 740 aa18.12■□□□□ 0.49
TPM1-215ENST00000558868 NEFMP07197 916 aa18.12■□□□□ 0.49
TPM1-215ENST00000558868 PIK3C2AO00443 1686 aa18.12■□□□□ 0.49
TPM1-215ENST00000558868 STRCP1A6NGW2 1772 aa18.12■□□□□ 0.49
TPM1-215ENST00000558868 NLRP6P59044 892 aa18.11■□□□□ 0.49
TPM1-215ENST00000558868 FKBP8Q14318 412 aa18.11■□□□□ 0.49
TPM1-215ENST00000558868 CCDC27Q2M243 656 aa18.11■□□□□ 0.49
TPM1-215ENST00000558868 ERICH6BQ5W0A0 696 aa18.11■□□□□ 0.49
TPM1-215ENST00000558868 CADPS2Q86UW7 1296 aa18.11■□□□□ 0.49
TPM1-215ENST00000558868 TCP11L2Q8N4U5 519 aa18.11■□□□□ 0.49
TPM1-215ENST00000558868 RGS17Q9UGC6 210 aaPredicted RBP18.11■□□□□ 0.49
TPM1-215ENST00000558868 MAPK8IP3Q9UPT6 1336 aa18.11■□□□□ 0.49
TPM1-215ENST00000558868 MSH6P52701 1360 aa18.11■□□□□ 0.49
TPM1-215ENST00000558868 C1orf167Q5SNV9 1468 aa18.11■□□□□ 0.49
TPM1-215ENST00000558868 PAK3O75914 559 aaPredicted RBP18.1■□□□□ 0.49
TPM1-215ENST00000558868 RRS1Q15050 365 aaKnown RBP18.1■□□□□ 0.49
TPM1-215ENST00000558868 ABTB2Q8N961 1025 aa18.1■□□□□ 0.49
TPM1-215ENST00000558868 KIF24Q5T7B8 1368 aa18.09■□□□□ 0.49
TPM1-215ENST00000558868 E9PSI1 815 aa18.09■□□□□ 0.49
TPM1-215ENST00000558868 FBLN1P23142 703 aa18.09■□□□□ 0.49
TPM1-215ENST00000558868 IL13P35225 146 aa18.09■□□□□ 0.49
TPM1-215ENST00000558868 CDCA7LQ96GN5 454 aa18.08■□□□□ 0.48
TPM1-215ENST00000558868 PLEKHF1Q96S99 279 aa18.08■□□□□ 0.48
TPM1-215ENST00000558868 SBNO1A3KN83 1393 aa18.07■□□□□ 0.48
TPM1-215ENST00000558868 SLFN5Q08AF3 891 aa18.07■□□□□ 0.48
TPM1-215ENST00000558868 WDR63Q8IWG1 891 aa18.07■□□□□ 0.48
TPM1-215ENST00000558868 WWC1Q8IX03 1113 aa18.07■□□□□ 0.48
TPM1-215ENST00000558868 ORAI2Q96SN7 254 aa18.07■□□□□ 0.48
TPM1-215ENST00000558868 MST1RQ04912 1400 aa18.06■□□□□ 0.48
TPM1-215ENST00000558868 RNF123Q5XPI4 1314 aa18.06■□□□□ 0.48
TPM1-215ENST00000558868 RCAN3Q9UKA8 241 aa18.06■□□□□ 0.48
TPM1-215ENST00000558868 FLT4P35916 1363 aa18.05■□□□□ 0.48
TPM1-215ENST00000558868 SRCAPQ6ZRS2 3230 aa18.05■□□□□ 0.48
TPM1-215ENST00000558868 MAP3K19Q56UN5 1328 aa18.04■□□□□ 0.48
TPM1-215ENST00000558868 AMPHP49418 695 aa18.04■□□□□ 0.48
TPM1-215ENST00000558868 DUSP27Q5VZP5 1158 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms