RNA–Protein interactions for RNA: ENST00000558072.5

TPM1-209, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-209ENST00000558072 NSD2O96028 1365 aa16.91■□□□□ 0.3
TPM1-209ENST00000558072 USP6P35125 1406 aa16.91■□□□□ 0.3
TPM1-209ENST00000558072 NSD3Q9BZ95 1437 aa16.91■□□□□ 0.3
TPM1-209ENST00000558072 PIK3C2AO00443 1686 aa16.91■□□□□ 0.3
TPM1-209ENST00000558072 PER1O15534 1290 aaPredicted RBP16.9■□□□□ 0.3
TPM1-209ENST00000558072 CNGB1Q14028 1251 aaPredicted RBP16.9■□□□□ 0.3
TPM1-209ENST00000558072 CARD14Q9BXL6 1004 aa16.9■□□□□ 0.3
TPM1-209ENST00000558072 MARF1Q9Y4F3 1742 aaKnown RBP16.9■□□□□ 0.3
TPM1-209ENST00000558072 KIF20BQ96Q89 1820 aa16.89■□□□□ 0.29
TPM1-209ENST00000558072 ALS2Q96Q42 1657 aa16.89■□□□□ 0.29
TPM1-209ENST00000558072 RALBP1Q15311 655 aa16.89■□□□□ 0.29
TPM1-209ENST00000558072 ZRANB1Q9UGI0 708 aa16.89■□□□□ 0.29
TPM1-209ENST00000558072 EDC4Q6P2E9 1401 aaKnown RBP16.88■□□□□ 0.29
TPM1-209ENST00000558072 PSME1Q06323 249 aa16.88■□□□□ 0.29
TPM1-209ENST00000558072 KRT28Q7Z3Y7 464 aa16.88■□□□□ 0.29
TPM1-209ENST00000558072 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.88■□□□□ 0.29
TPM1-209ENST00000558072 TTC21AQ8NDW8 1320 aa16.88■□□□□ 0.29
TPM1-209ENST00000558072 NUTM2GQ5VZR2 741 aa16.87■□□□□ 0.29
TPM1-209ENST00000558072 SSH2Q76I76 1423 aa16.87■□□□□ 0.29
TPM1-209ENST00000558072 PAK3O75914 559 aaPredicted RBP16.85■□□□□ 0.29
TPM1-209ENST00000558072 HSPA1LP34931 641 aa16.85■□□□□ 0.29
TPM1-209ENST00000558072 NME9Q86XW9 330 aa16.85■□□□□ 0.29
TPM1-209ENST00000558072 NPHP3Q7Z494 1330 aa16.85■□□□□ 0.29
TPM1-209ENST00000558072 ABCA3Q99758 1704 aa16.84■□□□□ 0.29
TPM1-209ENST00000558072 AMER1Q5JTC6 1135 aaPredicted RBP16.84■□□□□ 0.29
TPM1-209ENST00000558072 TTC21BQ7Z4L5 1316 aa16.84■□□□□ 0.29
TPM1-209ENST00000558072 TNS3Q68CZ2 1445 aa16.84■□□□□ 0.29
TPM1-209ENST00000558072 CRYBG1Q9Y4K1 1723 aa16.84■□□□□ 0.29
TPM1-209ENST00000558072 SOS2Q07890 1332 aaPredicted RBP16.83■□□□□ 0.28
TPM1-209ENST00000558072 LMOD2Q6P5Q4 547 aa16.83■□□□□ 0.28
TPM1-209ENST00000558072 PHRF1Q9P1Y6 1649 aaKnown RBP16.82■□□□□ 0.28
TPM1-209ENST00000558072 MED1Q15648 1581 aaPredicted RBP16.82■□□□□ 0.28
TPM1-209ENST00000558072 PRKRIP1Q9H875 184 aaPredicted RBP16.82■□□□□ 0.28
TPM1-209ENST00000558072 ANKRD26Q9UPS8 1709 aa16.82■□□□□ 0.28
TPM1-209ENST00000558072 GGNBP2Q9H3C7 697 aa16.81■□□□□ 0.28
TPM1-209ENST00000558072 SPATA31A3Q5VYP0 1347 aa16.8■□□□□ 0.28
TPM1-209ENST00000558072 MORC1Q86VD1 984 aa16.8■□□□□ 0.28
TPM1-209ENST00000558072 SBNO1A3KN83 1393 aa16.79■□□□□ 0.28
TPM1-209ENST00000558072 PNPLA6Q8IY17 1366 aa16.79■□□□□ 0.28
TPM1-209ENST00000558072 CCER2I3L3R5 266 aa16.79■□□□□ 0.28
TPM1-209ENST00000558072 CC2D1BQ5T0F9 858 aaKnown RBP16.79■□□□□ 0.28
TPM1-209ENST00000558072 CABLES1Q8TDN4 633 aa16.79■□□□□ 0.28
TPM1-209ENST00000558072 COG3Q96JB2 828 aa16.79■□□□□ 0.28
TPM1-209ENST00000558072 USP54Q70EL1 1684 aa16.78■□□□□ 0.28
TPM1-209ENST00000558072 PARD3Q8TEW0 1356 aa16.78■□□□□ 0.28
TPM1-209ENST00000558072 FYB1O15117 783 aa16.78■□□□□ 0.28
TPM1-209ENST00000558072 SOX12O15370 315 aa16.78■□□□□ 0.28
TPM1-209ENST00000558072 FBXO41Q8TF61 875 aa16.78■□□□□ 0.28
TPM1-209ENST00000558072 SHPRHQ149N8 1683 aa16.78■□□□□ 0.28
TPM1-209ENST00000558072 MYBBP1AQ9BQG0 1328 aaKnown RBP16.77■□□□□ 0.28
TPM1-209ENST00000558072 FBLN1P23142 703 aa16.77■□□□□ 0.28
TPM1-209ENST00000558072 OVOS2A0A0J9YW53 1432 aa16.77■□□□□ 0.27
TPM1-209ENST00000558072 OVOS2Q6IE36 1432 aa16.77■□□□□ 0.27
TPM1-209ENST00000558072 COL22A1Q8NFW1 1626 aaPredicted RBP16.77■□□□□ 0.27
TPM1-209ENST00000558072 NLRP13Q86W25 1043 aa16.76■□□□□ 0.27
TPM1-209ENST00000558072 ABTB2Q8N961 1025 aa16.76■□□□□ 0.27
TPM1-209ENST00000558072 USP31Q70CQ4 1352 aa16.76■□□□□ 0.27
TPM1-209ENST00000558072 TNNT2P45379 298 aaPredicted RBP16.74■□□□□ 0.27
TPM1-209ENST00000558072 SLIT3O75094 1523 aa16.74■□□□□ 0.27
TPM1-209ENST00000558072 ARHGEF10O15013 1369 aa16.74■□□□□ 0.27
TPM1-209ENST00000558072 LRP6O75581 1613 aa16.74■□□□□ 0.27
TPM1-209ENST00000558072 NLRP6P59044 892 aa16.73■□□□□ 0.27
TPM1-209ENST00000558072 MIER1Q8N108 512 aa16.73■□□□□ 0.27
TPM1-209ENST00000558072 KCNH5Q8NCM2 988 aa16.73■□□□□ 0.27
TPM1-209ENST00000558072 NFAT5O94916 1531 aa16.73■□□□□ 0.27
TPM1-209ENST00000558072 USP19O94966 1318 aa16.71■□□□□ 0.27
TPM1-209ENST00000558072 ZBTB7CA1YPR0 619 aa16.71■□□□□ 0.27
TPM1-209ENST00000558072 NUTM2BA6NNL0 878 aaPredicted RBP16.71■□□□□ 0.27
TPM1-209ENST00000558072 NUTM2EB1AL46 878 aaPredicted RBP16.71■□□□□ 0.27
TPM1-209ENST00000558072 NUTM2AQ8IVF1 878 aaPredicted RBP16.71■□□□□ 0.27
TPM1-209ENST00000558072 LRRC59Q96AG4 307 aaKnown RBP16.71■□□□□ 0.27
TPM1-209ENST00000558072 LTN1O94822 1766 aa16.71■□□□□ 0.27
TPM1-209ENST00000558072 PEAK1Q9H792 1746 aa16.7■□□□□ 0.26
TPM1-209ENST00000558072 AATKQ6ZMQ8 1374 aa16.7■□□□□ 0.26
TPM1-209ENST00000558072 CFAP53Q96M91 514 aa16.7■□□□□ 0.26
TPM1-209ENST00000558072 JCADQ9P266 1359 aa16.69■□□□□ 0.26
TPM1-209ENST00000558072 ILDR1Q86SU0 546 aaPredicted RBP16.69■□□□□ 0.26
TPM1-209ENST00000558072 PPP2R1AP30153 589 aa16.68■□□□□ 0.26
TPM1-209ENST00000558072 ZC3H6P61129 1189 aaKnown RBP16.67■□□□□ 0.26
TPM1-209ENST00000558072 RRS1Q15050 365 aaKnown RBP16.67■□□□□ 0.26
TPM1-209ENST00000558072 KIF24Q5T7B8 1368 aa16.66■□□□□ 0.26
TPM1-209ENST00000558072 RGPD5Q99666 1765 aa16.66■□□□□ 0.26
TPM1-209ENST00000558072 ADAMTS2O95450 1211 aa16.65■□□□□ 0.26
TPM1-209ENST00000558072 CHRNA2Q15822 529 aa16.65■□□□□ 0.26
TPM1-209ENST00000558072 MRS2Q9HD23 443 aa16.65■□□□□ 0.26
TPM1-209ENST00000558072 MAP2P11137 1827 aaKnown RBP16.65■□□□□ 0.26
TPM1-209ENST00000558072 PLCH1Q4KWH8 1693 aa16.65■□□□□ 0.26
TPM1-209ENST00000558072 HAP1P54257 671 aaPredicted RBP16.64■□□□□ 0.25
TPM1-209ENST00000558072 EMILIN1Q9Y6C2 1016 aa16.64■□□□□ 0.25
TPM1-209ENST00000558072 KIAA0232Q92628 1395 aa16.64■□□□□ 0.25
TPM1-209ENST00000558072 GCP02774 474 aa16.63■□□□□ 0.25
TPM1-209ENST00000558072 COL18A1P39060 1754 aa16.63■□□□□ 0.25
TPM1-209ENST00000558072 NUDCQ9Y266 331 aa16.62■□□□□ 0.25
TPM1-209ENST00000558072 MAP3K19Q56UN5 1328 aa16.62■□□□□ 0.25
TPM1-209ENST00000558072 LMO7Q8WWI1 1683 aa16.62■□□□□ 0.25
TPM1-209ENST00000558072 MTHFSP49914 203 aa16.61■□□□□ 0.25
TPM1-209ENST00000558072 INSRP06213 1382 aa16.6■□□□□ 0.25
TPM1-209ENST00000558072 PPM1GO15355 546 aaPredicted RBP16.59■□□□□ 0.25
TPM1-209ENST00000558072 POLKQ9UBT6 870 aa16.59■□□□□ 0.25
TPM1-209ENST00000558072 RTL1A6NKG5 1358 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms