RNA–Protein interactions for RNA: ENST00000557945.5

CASC4-204, Transcript of cancer susceptibility 4, humanhuman

TSL 1 (best)

Gene CASC4, Length 1,386 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-204ENST00000557945 SPATA31A3Q5VYP0 1347 aa29.33■■■□□ 2.29
CASC4-204ENST00000557945 ILDR1Q86SU0 546 aaPredicted RBP29.32■■■□□ 2.28
CASC4-204ENST00000557945 BRD4O60885 1362 aaPredicted RBP29.31■■■□□ 2.28
CASC4-204ENST00000557945 TTC21BQ7Z4L5 1316 aa29.31■■■□□ 2.28
CASC4-204ENST00000557945 SUGP2Q8IX01 1082 aaKnown RBP eCLIP29.31■■■□□ 2.28
CASC4-204ENST00000557945 TNS3Q68CZ2 1445 aa29.3■■■□□ 2.28
CASC4-204ENST00000557945 MON2Q7Z3U7 1717 aa29.3■■■□□ 2.28
CASC4-204ENST00000557945 TRPM3Q9HCF6 1732 aaPredicted RBP29.3■■■□□ 2.28
CASC4-204ENST00000557945 CARD14Q9BXL6 1004 aa29.29■■■□□ 2.28
CASC4-204ENST00000557945 EDC4Q6P2E9 1401 aaKnown RBP29.29■■■□□ 2.28
CASC4-204ENST00000557945 SSH2Q76I76 1423 aa29.29■■■□□ 2.28
CASC4-204ENST00000557945 ABTB2Q8N961 1025 aa29.27■■■□□ 2.28
CASC4-204ENST00000557945 TTC21AQ8NDW8 1320 aa29.27■■■□□ 2.28
CASC4-204ENST00000557945 PLEKHG5O94827 1062 aa29.26■■■□□ 2.28
CASC4-204ENST00000557945 NSD3Q9BZ95 1437 aa29.26■■■□□ 2.27
CASC4-204ENST00000557945 ARHGEF10O15013 1369 aa29.26■■■□□ 2.27
CASC4-204ENST00000557945 JCADQ9P266 1359 aa29.26■■■□□ 2.27
CASC4-204ENST00000557945 NUTM2GQ5VZR2 741 aa29.26■■■□□ 2.27
CASC4-204ENST00000557945 PNPLA6Q8IY17 1366 aa29.24■■■□□ 2.27
CASC4-204ENST00000557945 NRKQ7Z2Y5 1582 aa29.24■■■□□ 2.27
CASC4-204ENST00000557945 NME9Q86XW9 330 aa29.22■■■□□ 2.27
CASC4-204ENST00000557945 ALS2Q96Q42 1657 aa29.21■■■□□ 2.27
CASC4-204ENST00000557945 NLRP6P59044 892 aa29.21■■■□□ 2.27
CASC4-204ENST00000557945 DDX10Q13206 875 aaKnown RBP29.21■■■□□ 2.27
CASC4-204ENST00000557945 KNSTRNQ9Y448 316 aa29.2■■■□□ 2.26
CASC4-204ENST00000557945 NLRP13Q86W25 1043 aa29.18■■■□□ 2.26
CASC4-204ENST00000557945 CABLES1Q8TDN4 633 aa29.17■■■□□ 2.26
CASC4-204ENST00000557945 ZRANB1Q9UGI0 708 aa29.17■■■□□ 2.26
CASC4-204ENST00000557945 CGNL1Q0VF96 1302 aa29.17■■■□□ 2.26
CASC4-204ENST00000557945 PIK3C2AO00443 1686 aa29.17■■■□□ 2.26
CASC4-204ENST00000557945 SHPRHQ149N8 1683 aa29.17■■■□□ 2.26
CASC4-204ENST00000557945 NUTM2BA6NNL0 878 aaPredicted RBP29.16■■■□□ 2.26
CASC4-204ENST00000557945 NUTM2EB1AL46 878 aaPredicted RBP29.16■■■□□ 2.26
CASC4-204ENST00000557945 NUTM2AQ8IVF1 878 aaPredicted RBP29.16■■■□□ 2.26
CASC4-204ENST00000557945 HAP1P54257 671 aaPredicted RBP29.15■■■□□ 2.26
CASC4-204ENST00000557945 FYB1O15117 783 aa29.14■■■□□ 2.26
CASC4-204ENST00000557945 GGNBP2Q9H3C7 697 aa29.14■■■□□ 2.26
CASC4-204ENST00000557945 SPATA31A6Q5VVP1 1343 aa29.13■■■□□ 2.25
CASC4-204ENST00000557945 COL22A1Q8NFW1 1626 aaPredicted RBP29.12■■■□□ 2.25
CASC4-204ENST00000557945 PER1O15534 1290 aaPredicted RBP29.12■■■□□ 2.25
CASC4-204ENST00000557945 COG3Q96JB2 828 aa29.12■■■□□ 2.25
CASC4-204ENST00000557945 USP31Q70CQ4 1352 aa29.11■■■□□ 2.25
CASC4-204ENST00000557945 USP19O94966 1318 aa29.09■■■□□ 2.25
CASC4-204ENST00000557945 MED1Q15648 1581 aaPredicted RBP29.09■■■□□ 2.25
CASC4-204ENST00000557945 KIF20BQ96Q89 1820 aa29.08■■■□□ 2.25
CASC4-204ENST00000557945 SOX12O15370 315 aa29.08■■■□□ 2.25
CASC4-204ENST00000557945 CNGB1Q14028 1251 aaPredicted RBP29.08■■■□□ 2.25
CASC4-204ENST00000557945 OVOS2A0A0J9YW53 1432 aa29.06■■■□□ 2.24
CASC4-204ENST00000557945 OVOS2Q6IE36 1432 aa29.06■■■□□ 2.24
CASC4-204ENST00000557945 GCP02774 474 aa29.06■■■□□ 2.24
CASC4-204ENST00000557945 AMER1Q5JTC6 1135 aaPredicted RBP29.06■■■□□ 2.24
CASC4-204ENST00000557945 ADAMTS2O95450 1211 aa29.05■■■□□ 2.24
CASC4-204ENST00000557945 CC2D1BQ5T0F9 858 aaKnown RBP29.04■■■□□ 2.24
CASC4-204ENST00000557945 NSD2O96028 1365 aa29.04■■■□□ 2.24
CASC4-204ENST00000557945 KCNH5Q8NCM2 988 aa29.03■■■□□ 2.24
CASC4-204ENST00000557945 MEX3CQ5U5Q3 659 aaKnown RBP29.02■■■□□ 2.24
CASC4-204ENST00000557945 ABCA3Q99758 1704 aa29.02■■■□□ 2.24
CASC4-204ENST00000557945 MARF1Q9Y4F3 1742 aaKnown RBP29.02■■■□□ 2.24
CASC4-204ENST00000557945 SLIT3O75094 1523 aa29.02■■■□□ 2.24
CASC4-204ENST00000557945 LRP6O75581 1613 aa29.01■■■□□ 2.24
CASC4-204ENST00000557945 PHRF1Q9P1Y6 1649 aaKnown RBP29.01■■■□□ 2.24
CASC4-204ENST00000557945 ZC3H6P61129 1189 aaKnown RBP29.01■■■□□ 2.24
CASC4-204ENST00000557945 CRYBG1Q9Y4K1 1723 aa29.01■■■□□ 2.23
CASC4-204ENST00000557945 USP54Q70EL1 1684 aa29.01■■■□□ 2.23
CASC4-204ENST00000557945 MORC1Q86VD1 984 aa29.01■■■□□ 2.23
CASC4-204ENST00000557945 ZBTB7CA1YPR0 619 aa28.99■■■□□ 2.23
CASC4-204ENST00000557945 TNNT2P45379 298 aaPredicted RBP28.98■■■□□ 2.23
CASC4-204ENST00000557945 NPC1L1Q9UHC9 1359 aa28.98■■■□□ 2.23
CASC4-204ENST00000557945 KIAA0232Q92628 1395 aa28.96■■■□□ 2.23
CASC4-204ENST00000557945 PRDM11Q9NQV5 511 aa28.96■■■□□ 2.23
CASC4-204ENST00000557945 FBLN1P23142 703 aa28.95■■■□□ 2.22
CASC4-204ENST00000557945 ANKRD26Q9UPS8 1709 aa28.94■■■□□ 2.22
CASC4-204ENST00000557945 C8orf37Q96NL8 207 aa28.94■■■□□ 2.22
CASC4-204ENST00000557945 NFAT5O94916 1531 aa28.93■■■□□ 2.22
CASC4-204ENST00000557945 CHRNA2Q15822 529 aa28.92■■■□□ 2.22
CASC4-204ENST00000557945 CPDO75976 1380 aa28.92■■■□□ 2.22
CASC4-204ENST00000557945 FAM83GA6ND36 823 aa28.91■■■□□ 2.22
CASC4-204ENST00000557945 NGLY1Q96IV0 654 aa28.91■■■□□ 2.22
CASC4-204ENST00000557945 ARHGEF25Q86VW2 580 aa28.9■■■□□ 2.22
CASC4-204ENST00000557945 RRS1Q15050 365 aaKnown RBP28.89■■■□□ 2.22
CASC4-204ENST00000557945 MAP3K19Q56UN5 1328 aa28.87■■■□□ 2.21
CASC4-204ENST00000557945 AMPHP49418 695 aa28.86■■■□□ 2.21
CASC4-204ENST00000557945 AATKQ6ZMQ8 1374 aa28.86■■■□□ 2.21
CASC4-204ENST00000557945 PPM1GO15355 546 aaPredicted RBP28.85■■■□□ 2.21
CASC4-204ENST00000557945 BTG4Q9NY30 223 aa28.83■■■□□ 2.21
CASC4-204ENST00000557945 EMILIN1Q9Y6C2 1016 aa28.83■■■□□ 2.21
CASC4-204ENST00000557945 COL14A1Q05707 1796 aaKnown RBP28.83■■■□□ 2.21
CASC4-204ENST00000557945 LTN1O94822 1766 aa28.82■■■□□ 2.2
CASC4-204ENST00000557945 AFF2P51816 1311 aa28.82■■■□□ 2.2
CASC4-204ENST00000557945 POLKQ9UBT6 870 aa28.82■■■□□ 2.2
CASC4-204ENST00000557945 FNBP4Q8N3X1 1017 aaPredicted RBP28.8■■■□□ 2.2
CASC4-204ENST00000557945 PHF23Q9BUL5 403 aaPredicted RBP28.8■■■□□ 2.2
CASC4-204ENST00000557945 IP6K1Q92551 441 aa28.79■■■□□ 2.2
CASC4-204ENST00000557945 AXIN2Q9Y2T1 843 aa28.79■■■□□ 2.2
CASC4-204ENST00000557945 PARD3Q8TEW0 1356 aa28.79■■■□□ 2.2
CASC4-204ENST00000557945 HOXC9P31274 260 aa28.78■■■□□ 2.2
CASC4-204ENST00000557945 RALBP1Q15311 655 aa28.78■■■□□ 2.2
CASC4-204ENST00000557945 USP21Q9UK80 565 aa28.78■■■□□ 2.2
CASC4-204ENST00000557945 MAP2P11137 1827 aaKnown RBP28.78■■■□□ 2.2
CASC4-204ENST00000557945 EVA1CP58658 441 aa28.77■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms