RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 NDUFB9Q9Y6M9 179 aa9.76□□□□□ -0.85
SCFD1-221ENST00000556534 ZC3H4Q9UPT8 1303 aaKnown RBP9.76□□□□□ -0.85
SCFD1-221ENST00000556534 SKOR1P84550 965 aa9.75□□□□□ -0.85
SCFD1-221ENST00000556534 ZNF511Q8NB15 262 aa9.75□□□□□ -0.85
SCFD1-221ENST00000556534 ARMC2Q8NEN0 867 aa9.75□□□□□ -0.85
SCFD1-221ENST00000556534 BAP1Q92560 729 aa9.75□□□□□ -0.85
SCFD1-221ENST00000556534 TBC1D2BQ9UPU7 963 aa9.75□□□□□ -0.85
SCFD1-221ENST00000556534 NBPF14Q5TI25 921 aa9.74□□□□□ -0.85
SCFD1-221ENST00000556534 WNT7BP56706 349 aa9.73□□□□□ -0.85
SCFD1-221ENST00000556534 SH3BP2P78314 561 aa9.73□□□□□ -0.85
SCFD1-221ENST00000556534 ZNF697Q5TEC3 545 aa9.73□□□□□ -0.85
SCFD1-221ENST00000556534 ZNF598Q86UK7 904 aaKnown RBP9.73□□□□□ -0.85
SCFD1-221ENST00000556534 GPKOWQ92917 476 aaPredicted RBP eCLIP9.73□□□□□ -0.85
SCFD1-221ENST00000556534 CD2BP2O95400 341 aaKnown RBP9.72□□□□□ -0.85
SCFD1-221ENST00000556534 SH3BP5LQ7L8J4 393 aa9.72□□□□□ -0.85
SCFD1-221ENST00000556534 POM121Q96HA1 1249 aa9.72□□□□□ -0.85
SCFD1-221ENST00000556534 COG6Q9Y2V7 657 aa9.72□□□□□ -0.85
SCFD1-221ENST00000556534 UBTFP17480 764 aaKnown RBP9.71□□□□□ -0.86
SCFD1-221ENST00000556534 PNMA1Q8ND90 353 aa9.71□□□□□ -0.86
SCFD1-221ENST00000556534 GDPD2Q9HCC8 539 aa9.71□□□□□ -0.86
SCFD1-221ENST00000556534 PDXDC2PQ6P474 469 aa9.7□□□□□ -0.86
SCFD1-221ENST00000556534 SH3RF1Q7Z6J0 888 aa9.7□□□□□ -0.86
SCFD1-221ENST00000556534 FOXJ1Q92949 421 aa9.7□□□□□ -0.86
SCFD1-221ENST00000556534 IRF5Q13568 498 aa9.69□□□□□ -0.86
SCFD1-221ENST00000556534 C4orf48Q5BLP8 95 aa9.69□□□□□ -0.86
SCFD1-221ENST00000556534 TRIM67Q6ZTA4 783 aa9.69□□□□□ -0.86
SCFD1-221ENST00000556534 OCSTAMPQ9BR26 566 aa9.69□□□□□ -0.86
SCFD1-221ENST00000556534 PKD2L1Q9P0L9 805 aa9.69□□□□□ -0.86
SCFD1-221ENST00000556534 WNT7AO00755 349 aa9.68□□□□□ -0.86
SCFD1-221ENST00000556534 RC3H1Q5TC82 1133 aaKnown RBP9.67□□□□□ -0.86
SCFD1-221ENST00000556534 C1QTNF2Q9BXJ5 285 aa9.67□□□□□ -0.86
SCFD1-221ENST00000556534 PRM3Q9NNZ6 103 aa9.67□□□□□ -0.86
SCFD1-221ENST00000556534 GPSM3Q9Y4H4 160 aa9.67□□□□□ -0.86
SCFD1-221ENST00000556534 GDF9O60383 454 aa9.66□□□□□ -0.86
SCFD1-221ENST00000556534 ABL2P42684 1182 aa9.66□□□□□ -0.86
SCFD1-221ENST00000556534 BPHLQ86WA6 291 aaPredicted RBP9.66□□□□□ -0.86
SCFD1-221ENST00000556534 CLUAP1Q96AJ1 413 aa9.66□□□□□ -0.86
SCFD1-221ENST00000556534 FBXO45P0C2W1 286 aa9.65□□□□□ -0.86
SCFD1-221ENST00000556534 MRGPRX2Q96LB1 330 aa9.65□□□□□ -0.86
SCFD1-221ENST00000556534 ARHGAP9Q9BRR9 750 aa9.65□□□□□ -0.86
SCFD1-221ENST00000556534 ZBBXA8MT70 800 aa9.64□□□□□ -0.87
SCFD1-221ENST00000556534 RAD21O60216 631 aa9.64□□□□□ -0.87
SCFD1-221ENST00000556534 PTK2Q05397 1052 aa9.64□□□□□ -0.87
SCFD1-221ENST00000556534 FOXC1Q12948 553 aa9.64□□□□□ -0.87
SCFD1-221ENST00000556534 EHBP1Q8NDI1 1231 aa9.64□□□□□ -0.87
SCFD1-221ENST00000556534 CARD14Q9BXL6 1004 aa9.64□□□□□ -0.87
SCFD1-221ENST00000556534 MAGEB6P1A0A0J9YX57 407 aa9.63□□□□□ -0.87
SCFD1-221ENST00000556534 TNFRSF10AO00220 468 aa9.63□□□□□ -0.87
SCFD1-221ENST00000556534 VARSP26640 1264 aaKnown RBP9.63□□□□□ -0.87
SCFD1-221ENST00000556534 PRR20EP86478 221 aa9.63□□□□□ -0.87
SCFD1-221ENST00000556534 PRR20CP86479 221 aa9.63□□□□□ -0.87
SCFD1-221ENST00000556534 PRR20DP86480 221 aa9.63□□□□□ -0.87
SCFD1-221ENST00000556534 PRR20BP86481 221 aa9.63□□□□□ -0.87
SCFD1-221ENST00000556534 PRR20AP86496 221 aa9.63□□□□□ -0.87
SCFD1-221ENST00000556534 AGERQ15109 404 aa9.63□□□□□ -0.87
SCFD1-221ENST00000556534 ERFEQ4G0M1 354 aa9.63□□□□□ -0.87
SCFD1-221ENST00000556534 SIAH2O43255 324 aa9.62□□□□□ -0.87
SCFD1-221ENST00000556534 NR1H3Q13133 447 aa9.62□□□□□ -0.87
SCFD1-221ENST00000556534 ADAM32Q8TC27 787 aa9.62□□□□□ -0.87
SCFD1-221ENST00000556534 A6NJR5 290 aa9.61□□□□□ -0.87
SCFD1-221ENST00000556534 PROSER2Q86WR7 435 aaPredicted RBP9.61□□□□□ -0.87
SCFD1-221ENST00000556534 TRMT44Q8IYL2 757 aaKnown RBP9.61□□□□□ -0.87
SCFD1-221ENST00000556534 TLL2Q9Y6L7 1015 aa9.61□□□□□ -0.87
SCFD1-221ENST00000556534 FNBP4Q8N3X1 1017 aaPredicted RBP9.6□□□□□ -0.87
SCFD1-221ENST00000556534 FAM174AQ8TBP5 190 aa9.6□□□□□ -0.87
SCFD1-221ENST00000556534 ZBTB33Q86T24 672 aa9.59□□□□□ -0.87
SCFD1-221ENST00000556534 TOR4AQ9NXH8 423 aa9.59□□□□□ -0.87
SCFD1-221ENST00000556534 VAC14Q08AM6 782 aa9.58□□□□□ -0.88
SCFD1-221ENST00000556534 PDZRN3Q9UPQ7 1066 aa9.58□□□□□ -0.88
SCFD1-221ENST00000556534 WASHC4Q2M389 1173 aa9.57□□□□□ -0.88
SCFD1-221ENST00000556534 MPNDQ8N594 471 aa9.57□□□□□ -0.88
SCFD1-221ENST00000556534 SLC10A4Q96EP9 437 aa9.57□□□□□ -0.88
SCFD1-221ENST00000556534 C14orf37Q86TY3 774 aa9.56□□□□□ -0.88
SCFD1-221ENST00000556534 CDK15Q96Q40 435 aa9.56□□□□□ -0.88
SCFD1-221ENST00000556534 MAP4K5Q9Y4K4 846 aa9.56□□□□□ -0.88
SCFD1-221ENST00000556534 WWC1Q8IX03 1113 aa9.55□□□□□ -0.88
SCFD1-221ENST00000556534 CYP4X1Q8N118 509 aa9.55□□□□□ -0.88
SCFD1-221ENST00000556534 SNIP1Q8TAD8 396 aaKnown RBP9.55□□□□□ -0.88
SCFD1-221ENST00000556534 POM121CA8CG34 1229 aa9.54□□□□□ -0.88
SCFD1-221ENST00000556534 ZMYND15Q9H091 742 aa9.54□□□□□ -0.88
SCFD1-221ENST00000556534 PCDHB9Q9Y5E1 797 aa9.54□□□□□ -0.88
SCFD1-221ENST00000556534 J3QL48 77 aa9.53□□□□□ -0.88
SCFD1-221ENST00000556534 ALDH1A1P00352 501 aa9.53□□□□□ -0.88
SCFD1-221ENST00000556534 SMPD1P17405 629 aa9.53□□□□□ -0.88
SCFD1-221ENST00000556534 DZIP3Q86Y13 1208 aaKnown RBP9.53□□□□□ -0.88
SCFD1-221ENST00000556534 TIMELESSQ9UNS1 1208 aa9.53□□□□□ -0.88
SCFD1-221ENST00000556534 ZNF330Q9Y3S2 320 aaPredicted RBP9.53□□□□□ -0.88
SCFD1-221ENST00000556534 TTC24A2A3L6 582 aaPredicted RBP9.52□□□□□ -0.89
SCFD1-221ENST00000556534 NRG2O14511 850 aaPredicted RBP9.52□□□□□ -0.89
SCFD1-221ENST00000556534 ADH1CP00326 375 aa9.52□□□□□ -0.89
SCFD1-221ENST00000556534 CDV3Q9UKY7 258 aaKnown RBP9.52□□□□□ -0.89
SCFD1-221ENST00000556534 TRAK2O60296 914 aa9.51□□□□□ -0.89
SCFD1-221ENST00000556534 GFRA3O60609 400 aa9.51□□□□□ -0.89
SCFD1-221ENST00000556534 FSHRP23945 695 aa9.51□□□□□ -0.89
SCFD1-221ENST00000556534 EIF4G2P78344 907 aaKnown RBP eCLIP9.51□□□□□ -0.89
SCFD1-221ENST00000556534 ARID5BQ14865 1188 aa9.51□□□□□ -0.89
SCFD1-221ENST00000556534 VASH1Q7L8A9 365 aaPredicted RBP9.51□□□□□ -0.89
SCFD1-221ENST00000556534 ADAMTS19Q8TE59 1207 aa9.51□□□□□ -0.89
SCFD1-221ENST00000556534 ESPNB1AK53 854 aa9.5□□□□□ -0.89
SCFD1-221ENST00000556534 SOX11P35716 441 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms