RNA–Protein interactions for RNA: ENST00000556380.3

SRP54-210, Transcript of signal recognition particle 54, humanhuman

TSL 3

Gene SRP54, Length 600 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-210ENST00000556380 EIF3AQ14152 1382 aaKnown RBP13.7□□□□□ -0.22
SRP54-210ENST00000556380 JCADQ9P266 1359 aa13.7□□□□□ -0.22
SRP54-210ENST00000556380 TULP4Q9NRJ4 1543 aa13.69□□□□□ -0.22
SRP54-210ENST00000556380 NPHP3Q7Z494 1330 aa13.69□□□□□ -0.22
SRP54-210ENST00000556380 MNX1P50219 401 aaPredicted RBP13.69□□□□□ -0.22
SRP54-210ENST00000556380 LRRC59Q96AG4 307 aaKnown RBP13.69□□□□□ -0.22
SRP54-210ENST00000556380 PXDNQ92626 1479 aa13.68□□□□□ -0.22
SRP54-210ENST00000556380 ZRANB1Q9UGI0 708 aa13.68□□□□□ -0.22
SRP54-210ENST00000556380 SBNO2Q9Y2G9 1366 aa13.68□□□□□ -0.22
SRP54-210ENST00000556380 ATP7BP35670 1465 aa13.67□□□□□ -0.22
SRP54-210ENST00000556380 PLEKHG3A1L390 1219 aa13.67□□□□□ -0.22
SRP54-210ENST00000556380 PMFBP1Q8TBY8 1022 aa13.67□□□□□ -0.22
SRP54-210ENST00000556380 TESK2Q96S53 571 aa13.67□□□□□ -0.22
SRP54-210ENST00000556380 CABP2Q9NPB3 220 aa13.67□□□□□ -0.22
SRP54-210ENST00000556380 CCDC61Q9Y6R9 512 aa13.67□□□□□ -0.22
SRP54-210ENST00000556380 ST20-MTHFSA0A0A6YYL1 179 aa13.66□□□□□ -0.22
SRP54-210ENST00000556380 XPCQ01831 940 aaPredicted RBP13.66□□□□□ -0.22
SRP54-210ENST00000556380 KRT28Q7Z3Y7 464 aa13.66□□□□□ -0.22
SRP54-210ENST00000556380 RGPD8O14715 1765 aaPredicted RBP13.66□□□□□ -0.22
SRP54-210ENST00000556380 EVC2Q86UK5 1308 aa13.65□□□□□ -0.22
SRP54-210ENST00000556380 PNPLA6Q8IY17 1366 aa13.65□□□□□ -0.22
SRP54-210ENST00000556380 QRICH2Q9H0J4 1663 aa13.65□□□□□ -0.22
SRP54-210ENST00000556380 KIF1AQ12756 1690 aa13.64□□□□□ -0.23
SRP54-210ENST00000556380 SRPK2P78362 688 aaKnown RBP13.64□□□□□ -0.23
SRP54-210ENST00000556380 SPATA31A6Q5VVP1 1343 aa13.64□□□□□ -0.23
SRP54-210ENST00000556380 SPATA31A3Q5VYP0 1347 aa13.64□□□□□ -0.23
SRP54-210ENST00000556380 POLR3AO14802 1390 aaPredicted RBP13.63□□□□□ -0.23
SRP54-210ENST00000556380 USP47Q96K76 1375 aa13.63□□□□□ -0.23
SRP54-210ENST00000556380 PSME1Q06323 249 aa13.63□□□□□ -0.23
SRP54-210ENST00000556380 FKBP8Q14318 412 aa13.63□□□□□ -0.23
SRP54-210ENST00000556380 ZNF579Q8NAF0 562 aaKnown RBP13.63□□□□□ -0.23
SRP54-210ENST00000556380 SBNO1A3KN83 1393 aa13.62□□□□□ -0.23
SRP54-210ENST00000556380 NGDNQ8NEJ9 315 aaKnown RBP13.62□□□□□ -0.23
SRP54-210ENST00000556380 PUS7Q96PZ0 661 aaKnown RBP13.62□□□□□ -0.23
SRP54-210ENST00000556380 CABP1Q9NZU7 370 aa13.62□□□□□ -0.23
SRP54-210ENST00000556380 SHPRHQ149N8 1683 aa13.62□□□□□ -0.23
SRP54-210ENST00000556380 MED1Q15648 1581 aaPredicted RBP13.62□□□□□ -0.23
SRP54-210ENST00000556380 ACEP12821 1306 aa13.62□□□□□ -0.23
SRP54-210ENST00000556380 CLCN6P51797 869 aa13.61□□□□□ -0.23
SRP54-210ENST00000556380 LRP6O75581 1613 aa13.61□□□□□ -0.23
SRP54-210ENST00000556380 PPIP5K1Q6PFW1 1433 aa13.6□□□□□ -0.23
SRP54-210ENST00000556380 RGS17Q9UGC6 210 aaPredicted RBP13.6□□□□□ -0.23
SRP54-210ENST00000556380 TOPAZ1Q8N9V7 1692 aa13.59□□□□□ -0.23
SRP54-210ENST00000556380 SLC24A1O60721 1099 aa13.59□□□□□ -0.23
SRP54-210ENST00000556380 DISP3Q9P2K9 1392 aa13.58□□□□□ -0.23
SRP54-210ENST00000556380 TNS3Q68CZ2 1445 aa13.58□□□□□ -0.24
SRP54-210ENST00000556380 PAK3O75914 559 aaPredicted RBP13.58□□□□□ -0.24
SRP54-210ENST00000556380 ATAD2Q6PL18 1390 aa13.58□□□□□ -0.24
SRP54-210ENST00000556380 NUTM2BA6NNL0 878 aaPredicted RBP13.57□□□□□ -0.24
SRP54-210ENST00000556380 NUTM2EB1AL46 878 aaPredicted RBP13.57□□□□□ -0.24
SRP54-210ENST00000556380 NUTM2AQ8IVF1 878 aaPredicted RBP13.57□□□□□ -0.24
SRP54-210ENST00000556380 COL22A1Q8NFW1 1626 aaPredicted RBP13.57□□□□□ -0.24
SRP54-210ENST00000556380 ARHGEF10O15013 1369 aa13.56□□□□□ -0.24
SRP54-210ENST00000556380 ITSN1Q15811 1721 aa13.56□□□□□ -0.24
SRP54-210ENST00000556380 TRPM3Q9HCF6 1732 aaPredicted RBP13.56□□□□□ -0.24
SRP54-210ENST00000556380 SSH2Q76I76 1423 aa13.56□□□□□ -0.24
SRP54-210ENST00000556380 SLC12A5Q9H2X9 1139 aa13.55□□□□□ -0.24
SRP54-210ENST00000556380 CPSF1Q10570 1443 aaKnown RBP13.55□□□□□ -0.24
SRP54-210ENST00000556380 HSPA5P11021 654 aaKnown RBP13.54□□□□□ -0.24
SRP54-210ENST00000556380 EIF4G2P78344 907 aaKnown RBP eCLIP13.54□□□□□ -0.248e-7■■■■■ 28.7
SRP54-210ENST00000556380 TMF1P82094 1093 aa13.54□□□□□ -0.24
SRP54-210ENST00000556380 MIER1Q8N108 512 aa13.54□□□□□ -0.24
SRP54-210ENST00000556380 BRD4O60885 1362 aaPredicted RBP13.54□□□□□ -0.24
SRP54-210ENST00000556380 POTEIP0CG38 1075 aa13.53□□□□□ -0.24
SRP54-210ENST00000556380 LMOD2Q6P5Q4 547 aa13.53□□□□□ -0.24
SRP54-210ENST00000556380 CABLES1Q8TDN4 633 aa13.53□□□□□ -0.24
SRP54-210ENST00000556380 USP6P35125 1406 aa13.53□□□□□ -0.24
SRP54-210ENST00000556380 CD163L1Q9NR16 1453 aa13.53□□□□□ -0.24
SRP54-210ENST00000556380 ADAMTS2O95450 1211 aa13.52□□□□□ -0.25
SRP54-210ENST00000556380 ALS2Q96Q42 1657 aa13.52□□□□□ -0.25
SRP54-210ENST00000556380 MEX3CQ5U5Q3 659 aaKnown RBP13.51□□□□□ -0.25
SRP54-210ENST00000556380 FNBP4Q8N3X1 1017 aaPredicted RBP13.51□□□□□ -0.25
SRP54-210ENST00000556380 TMC1Q8TDI8 760 aa13.51□□□□□ -0.25
SRP54-210ENST00000556380 PHF12Q96QT6 1004 aa13.51□□□□□ -0.25
SRP54-210ENST00000556380 TTC21BQ7Z4L5 1316 aa13.5□□□□□ -0.25
SRP54-210ENST00000556380 POTEAQ6S8J7 498 aa13.5□□□□□ -0.25
SRP54-210ENST00000556380 ILDR2Q71H61 639 aa13.5□□□□□ -0.25
SRP54-210ENST00000556380 C8orf37Q96NL8 207 aa13.5□□□□□ -0.25
SRP54-210ENST00000556380 NINLQ9Y2I6 1382 aa13.49□□□□□ -0.25
SRP54-210ENST00000556380 PLEKHG5O94827 1062 aa13.49□□□□□ -0.25
SRP54-210ENST00000556380 CDCA8Q53HL2 280 aa13.49□□□□□ -0.25
SRP54-210ENST00000556380 NUTM2GQ5VZR2 741 aa13.49□□□□□ -0.25
SRP54-210ENST00000556380 ABTB2Q8N961 1025 aa13.49□□□□□ -0.25
SRP54-210ENST00000556380 KTN1Q86UP2 1357 aaKnown RBP13.48□□□□□ -0.25
SRP54-210ENST00000556380 USP19O94966 1318 aa13.48□□□□□ -0.25
SRP54-210ENST00000556380 AFF2P51816 1311 aa13.48□□□□□ -0.25
SRP54-210ENST00000556380 C11orf95C9JLR9 678 aaPredicted RBP13.48□□□□□ -0.25
SRP54-210ENST00000556380 NGLY1Q96IV0 654 aa13.48□□□□□ -0.25
SRP54-210ENST00000556380 A0A1W2PP64 1363 aa13.47□□□□□ -0.25
SRP54-210ENST00000556380 FAM83GA6ND36 823 aa13.47□□□□□ -0.25
SRP54-210ENST00000556380 GALR2O43603 387 aaPredicted RBP13.47□□□□□ -0.25
SRP54-210ENST00000556380 ZNF772Q68DY9 489 aaPredicted RBP13.47□□□□□ -0.25
SRP54-210ENST00000556380 TERF2IPQ9NYB0 399 aa13.47□□□□□ -0.25
SRP54-210ENST00000556380 TTC21AQ8NDW8 1320 aa13.46□□□□□ -0.25
SRP54-210ENST00000556380 HDGFL2Q7Z4V5 671 aaPredicted RBP13.46□□□□□ -0.25
SRP54-210ENST00000556380 NLRP13Q86W25 1043 aa13.46□□□□□ -0.25
SRP54-210ENST00000556380 DCBLD2Q96PD2 775 aa13.46□□□□□ -0.25
SRP54-210ENST00000556380 AKAP12Q02952 1782 aa13.45□□□□□ -0.26
SRP54-210ENST00000556380 BCL9LQ86UU0 1499 aa13.45□□□□□ -0.26
SRP54-210ENST00000556380 NLRP6P59044 892 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms