RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 ATAD2Q6PL18 1390 aa19.43■□□□□ 0.7
SHMT2-219ENST00000555563 RXRBP28702 533 aa19.42■□□□□ 0.7
SHMT2-219ENST00000555563 USP47Q96K76 1375 aa19.42■□□□□ 0.7
SHMT2-219ENST00000555563 PHRF1Q9P1Y6 1649 aaKnown RBP19.41■□□□□ 0.7
SHMT2-219ENST00000555563 PLCH1Q4KWH8 1693 aa19.41■□□□□ 0.7
SHMT2-219ENST00000555563 HAP1P54257 671 aaPredicted RBP19.41■□□□□ 0.7
SHMT2-219ENST00000555563 CABP1Q9NZU7 370 aa19.41■□□□□ 0.7
SHMT2-219ENST00000555563 AKAP12Q02952 1782 aa19.41■□□□□ 0.7
SHMT2-219ENST00000555563 USP6P35125 1406 aa19.41■□□□□ 0.7
SHMT2-219ENST00000555563 FNBP4Q8N3X1 1017 aaPredicted RBP19.4■□□□□ 0.7
SHMT2-219ENST00000555563 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.39■□□□□ 0.7
SHMT2-219ENST00000555563 ST20-MTHFSA0A0A6YYL1 179 aa19.39■□□□□ 0.69
SHMT2-219ENST00000555563 USP21Q9UK80 565 aa19.39■□□□□ 0.69
SHMT2-219ENST00000555563 SLIT2O94813 1529 aa19.38■□□□□ 0.69
SHMT2-219ENST00000555563 NRKQ7Z2Y5 1582 aa19.38■□□□□ 0.69
SHMT2-219ENST00000555563 BCL9LQ86UU0 1499 aa19.38■□□□□ 0.69
SHMT2-219ENST00000555563 TESK2Q96S53 571 aa19.38■□□□□ 0.69
SHMT2-219ENST00000555563 ATRNO75882 1429 aa19.37■□□□□ 0.69
SHMT2-219ENST00000555563 NWD2Q9ULI1 1742 aa19.37■□□□□ 0.69
SHMT2-219ENST00000555563 MON2Q7Z3U7 1717 aa19.36■□□□□ 0.69
SHMT2-219ENST00000555563 PIK3C2AO00443 1686 aa19.36■□□□□ 0.69
SHMT2-219ENST00000555563 CDK12Q9NYV4 1490 aaPredicted RBP19.35■□□□□ 0.69
SHMT2-219ENST00000555563 CPSF1Q10570 1443 aaKnown RBP19.35■□□□□ 0.69
SHMT2-219ENST00000555563 SSH2Q76I76 1423 aa19.35■□□□□ 0.69
SHMT2-219ENST00000555563 BRD4O60885 1362 aaPredicted RBP19.35■□□□□ 0.69
SHMT2-219ENST00000555563 NUTM2GQ5VZR2 741 aa19.35■□□□□ 0.69
SHMT2-219ENST00000555563 QTRT2Q9H974 415 aaKnown RBP19.35■□□□□ 0.69
SHMT2-219ENST00000555563 COL14A1Q05707 1796 aaKnown RBP19.34■□□□□ 0.69
SHMT2-219ENST00000555563 CD163L1Q9NR16 1453 aa19.34■□□□□ 0.69
SHMT2-219ENST00000555563 NRAPQ86VF7 1730 aa19.34■□□□□ 0.69
SHMT2-219ENST00000555563 TRPC5Q9UL62 973 aaPredicted RBP19.33■□□□□ 0.68
SHMT2-219ENST00000555563 RGS12O14924 1447 aa19.33■□□□□ 0.68
SHMT2-219ENST00000555563 USP19O94966 1318 aa19.32■□□□□ 0.68
SHMT2-219ENST00000555563 ABTB2Q8N961 1025 aa19.32■□□□□ 0.68
SHMT2-219ENST00000555563 RBM6P78332 1123 aaKnown RBP19.31■□□□□ 0.68
SHMT2-219ENST00000555563 FAM83GA6ND36 823 aa19.3■□□□□ 0.68
SHMT2-219ENST00000555563 UNC5CLQ8IV45 518 aa19.3■□□□□ 0.68
SHMT2-219ENST00000555563 KTN1Q86UP2 1357 aaKnown RBP19.3■□□□□ 0.68
SHMT2-219ENST00000555563 TMC1Q8TDI8 760 aa19.29■□□□□ 0.68
SHMT2-219ENST00000555563 PUS7Q96PZ0 661 aaKnown RBP19.29■□□□□ 0.68
SHMT2-219ENST00000555563 SLIT3O75094 1523 aa19.29■□□□□ 0.68
SHMT2-219ENST00000555563 KIAA0232Q92628 1395 aa19.29■□□□□ 0.68
SHMT2-219ENST00000555563 GLI3P10071 1580 aa19.28■□□□□ 0.68
SHMT2-219ENST00000555563 ZNF692Q9BU19 519 aaPredicted RBP19.28■□□□□ 0.68
SHMT2-219ENST00000555563 TTC21BQ7Z4L5 1316 aa19.27■□□□□ 0.68
SHMT2-219ENST00000555563 SLC24A1O60721 1099 aa19.27■□□□□ 0.68
SHMT2-219ENST00000555563 NLRP13Q86W25 1043 aa19.27■□□□□ 0.68
SHMT2-219ENST00000555563 SLC12A5Q9H2X9 1139 aa19.27■□□□□ 0.68
SHMT2-219ENST00000555563 PRDM11Q9NQV5 511 aa19.27■□□□□ 0.68
SHMT2-219ENST00000555563 A0A1W2PP64 1363 aa19.27■□□□□ 0.68
SHMT2-219ENST00000555563 NINLQ9Y2I6 1382 aa19.27■□□□□ 0.68
SHMT2-219ENST00000555563 TMF1P82094 1093 aa19.26■□□□□ 0.67
SHMT2-219ENST00000555563 TTC21AQ8NDW8 1320 aa19.25■□□□□ 0.67
SHMT2-219ENST00000555563 NLRP6P59044 892 aa19.25■□□□□ 0.67
SHMT2-219ENST00000555563 ZC3H6P61129 1189 aaKnown RBP19.25■□□□□ 0.67
SHMT2-219ENST00000555563 USP54Q70EL1 1684 aa19.24■□□□□ 0.67
SHMT2-219ENST00000555563 LMO7Q8WWI1 1683 aa19.24■□□□□ 0.67
SHMT2-219ENST00000555563 CPDO75976 1380 aa19.24■□□□□ 0.67
SHMT2-219ENST00000555563 GJD4Q96KN9 370 aaPredicted RBP19.24■□□□□ 0.67
SHMT2-219ENST00000555563 BTG4Q9NY30 223 aa19.24■□□□□ 0.67
SHMT2-219ENST00000555563 MYOM1P52179 1685 aa19.24■□□□□ 0.67
SHMT2-219ENST00000555563 CHRNA2Q15822 529 aa19.23■□□□□ 0.67
SHMT2-219ENST00000555563 VPS72Q15906 364 aa19.23■□□□□ 0.67
SHMT2-219ENST00000555563 HDGFL2Q7Z4V5 671 aaPredicted RBP19.23■□□□□ 0.67
SHMT2-219ENST00000555563 EDC4Q6P2E9 1401 aaKnown RBP19.23■□□□□ 0.67
SHMT2-219ENST00000555563 GCP02774 474 aa19.22■□□□□ 0.67
SHMT2-219ENST00000555563 TERF2IPQ9NYB0 399 aa19.22■□□□□ 0.67
SHMT2-219ENST00000555563 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.21■□□□□ 0.67
SHMT2-219ENST00000555563 NFAT5O94916 1531 aa19.2■□□□□ 0.66
SHMT2-219ENST00000555563 CAMTA1Q9Y6Y1 1673 aa19.2■□□□□ 0.66
SHMT2-219ENST00000555563 ANKRD36BQ8N2N9 1353 aa19.19■□□□□ 0.66
SHMT2-219ENST00000555563 NME9Q86XW9 330 aa19.19■□□□□ 0.66
SHMT2-219ENST00000555563 CCDC9Q9Y3X0 531 aaKnown RBP19.19■□□□□ 0.66
SHMT2-219ENST00000555563 USP31Q70CQ4 1352 aa19.19■□□□□ 0.66
SHMT2-219ENST00000555563 EIF4G2P78344 907 aaKnown RBP eCLIP19.18■□□□□ 0.66
SHMT2-219ENST00000555563 CDCA8Q53HL2 280 aa19.18■□□□□ 0.66
SHMT2-219ENST00000555563 HSPA5P11021 654 aaKnown RBP19.17■□□□□ 0.66
SHMT2-219ENST00000555563 ZRANB1Q9UGI0 708 aa19.17■□□□□ 0.66
SHMT2-219ENST00000555563 COL18A1P39060 1754 aa19.16■□□□□ 0.66
SHMT2-219ENST00000555563 OVOS2A0A0J9YW53 1432 aa19.16■□□□□ 0.66
SHMT2-219ENST00000555563 OVOS2Q6IE36 1432 aa19.16■□□□□ 0.66
SHMT2-219ENST00000555563 COL5A2P05997 1499 aaPredicted RBP19.16■□□□□ 0.66
SHMT2-219ENST00000555563 ZBTB7CA1YPR0 619 aa19.15■□□□□ 0.66
SHMT2-219ENST00000555563 SOX12O15370 315 aa19.15■□□□□ 0.66
SHMT2-219ENST00000555563 STRN4Q9NRL3 753 aa19.15■□□□□ 0.66
SHMT2-219ENST00000555563 BRWD3Q6RI45 1802 aa19.14■□□□□ 0.65
SHMT2-219ENST00000555563 KCNH5Q8NCM2 988 aa19.14■□□□□ 0.65
SHMT2-219ENST00000555563 SPATA31A5Q5VU36 1347 aa19.14■□□□□ 0.65
SHMT2-219ENST00000555563 SPATA31A7Q8IWB4 1347 aa19.14■□□□□ 0.65
SHMT2-219ENST00000555563 AATKQ6ZMQ8 1374 aa19.14■□□□□ 0.65
SHMT2-219ENST00000555563 THSD7AQ9UPZ6 1657 aa19.13■□□□□ 0.65
SHMT2-219ENST00000555563 LTN1O94822 1766 aa19.11■□□□□ 0.65
SHMT2-219ENST00000555563 ABCC6O95255 1503 aa19.11■□□□□ 0.65
SHMT2-219ENST00000555563 ARHGEF25Q86VW2 580 aa19.11■□□□□ 0.65
SHMT2-219ENST00000555563 SEPT12Q8IYM1 358 aa19.11■□□□□ 0.65
SHMT2-219ENST00000555563 KIF20BQ96Q89 1820 aa19.11■□□□□ 0.65
SHMT2-219ENST00000555563 SPATA31A1Q5TZJ5 1347 aa19.1■□□□□ 0.65
SHMT2-219ENST00000555563 ONECUT3O60422 494 aaPredicted RBP19.1■□□□□ 0.65
SHMT2-219ENST00000555563 EVA1CP58658 441 aa19.1■□□□□ 0.65
SHMT2-219ENST00000555563 FAM98CQ17RN3 349 aaKnown RBP19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms