RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 PAK3O75914 559 aaPredicted RBP19.94■□□□□ 0.78
SHMT2-217ENST00000555116 TMF1P82094 1093 aa19.94■□□□□ 0.78
SHMT2-217ENST00000555116 SSH2Q76I76 1423 aa19.93■□□□□ 0.78
SHMT2-217ENST00000555116 BRD4O60885 1362 aaPredicted RBP19.93■□□□□ 0.78
SHMT2-217ENST00000555116 EIF4G2P78344 907 aaKnown RBP eCLIP19.93■□□□□ 0.78
SHMT2-217ENST00000555116 CD163L1Q9NR16 1453 aa19.93■□□□□ 0.78
SHMT2-217ENST00000555116 ADAMTS2O95450 1211 aa19.92■□□□□ 0.78
SHMT2-217ENST00000555116 HSPA5P11021 654 aaKnown RBP19.92■□□□□ 0.78
SHMT2-217ENST00000555116 CABLES1Q8TDN4 633 aa19.92■□□□□ 0.78
SHMT2-217ENST00000555116 NRKQ7Z2Y5 1582 aa19.91■□□□□ 0.78
SHMT2-217ENST00000555116 SLC12A5Q9H2X9 1139 aa19.91■□□□□ 0.78
SHMT2-217ENST00000555116 ZNF692Q9BU19 519 aaPredicted RBP19.9■□□□□ 0.78
SHMT2-217ENST00000555116 TMC1Q8TDI8 760 aa19.9■□□□□ 0.78
SHMT2-217ENST00000555116 PHRF1Q9P1Y6 1649 aaKnown RBP19.89■□□□□ 0.77
SHMT2-217ENST00000555116 C8orf37Q96NL8 207 aa19.88■□□□□ 0.77
SHMT2-217ENST00000555116 PIK3C2AO00443 1686 aa19.88■□□□□ 0.77
SHMT2-217ENST00000555116 NINLQ9Y2I6 1382 aa19.88■□□□□ 0.77
SHMT2-217ENST00000555116 PLEKHG5O94827 1062 aa19.88■□□□□ 0.77
SHMT2-217ENST00000555116 KTN1Q86UP2 1357 aaKnown RBP19.87■□□□□ 0.77
SHMT2-217ENST00000555116 MYOM1P52179 1685 aa19.87■□□□□ 0.77
SHMT2-217ENST00000555116 AFF2P51816 1311 aa19.87■□□□□ 0.77
SHMT2-217ENST00000555116 CDCA8Q53HL2 280 aa19.86■□□□□ 0.77
SHMT2-217ENST00000555116 NUTM2GQ5VZR2 741 aa19.86■□□□□ 0.77
SHMT2-217ENST00000555116 ABTB2Q8N961 1025 aa19.86■□□□□ 0.77
SHMT2-217ENST00000555116 TTC21BQ7Z4L5 1316 aa19.86■□□□□ 0.77
SHMT2-217ENST00000555116 NGLY1Q96IV0 654 aa19.86■□□□□ 0.77
SHMT2-217ENST00000555116 A0A1W2PP64 1363 aa19.85■□□□□ 0.77
SHMT2-217ENST00000555116 POTEAQ6S8J7 498 aa19.85■□□□□ 0.77
SHMT2-217ENST00000555116 HAP1P54257 671 aaPredicted RBP19.84■□□□□ 0.77
SHMT2-217ENST00000555116 ILDR2Q71H61 639 aa19.84■□□□□ 0.77
SHMT2-217ENST00000555116 HDGFL2Q7Z4V5 671 aaPredicted RBP19.84■□□□□ 0.77
SHMT2-217ENST00000555116 TERF2IPQ9NYB0 399 aa19.84■□□□□ 0.77
SHMT2-217ENST00000555116 USP19O94966 1318 aa19.83■□□□□ 0.77
SHMT2-217ENST00000555116 ZNF772Q68DY9 489 aaPredicted RBP19.83■□□□□ 0.76
SHMT2-217ENST00000555116 FNBP4Q8N3X1 1017 aaPredicted RBP19.83■□□□□ 0.76
SHMT2-217ENST00000555116 TTC21AQ8NDW8 1320 aa19.83■□□□□ 0.76
SHMT2-217ENST00000555116 PLCH1Q4KWH8 1693 aa19.82■□□□□ 0.76
SHMT2-217ENST00000555116 EDC4Q6P2E9 1401 aaKnown RBP19.82■□□□□ 0.76
SHMT2-217ENST00000555116 NLRP13Q86W25 1043 aa19.82■□□□□ 0.76
SHMT2-217ENST00000555116 USP54Q70EL1 1684 aa19.81■□□□□ 0.76
SHMT2-217ENST00000555116 ANKRD36BQ8N2N9 1353 aa19.81■□□□□ 0.76
SHMT2-217ENST00000555116 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.8■□□□□ 0.76
SHMT2-217ENST00000555116 NWD2Q9ULI1 1742 aa19.8■□□□□ 0.76
SHMT2-217ENST00000555116 SLIT3O75094 1523 aa19.8■□□□□ 0.76
SHMT2-217ENST00000555116 SLIT2O94813 1529 aa19.8■□□□□ 0.76
SHMT2-217ENST00000555116 NLRP6P59044 892 aa19.79■□□□□ 0.76
SHMT2-217ENST00000555116 COL14A1Q05707 1796 aaKnown RBP19.79■□□□□ 0.76
SHMT2-217ENST00000555116 BCL9LQ86UU0 1499 aa19.79■□□□□ 0.76
SHMT2-217ENST00000555116 FAM83GA6ND36 823 aa19.78■□□□□ 0.76
SHMT2-217ENST00000555116 C11orf95C9JLR9 678 aaPredicted RBP19.78■□□□□ 0.76
SHMT2-217ENST00000555116 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.78■□□□□ 0.76
SHMT2-217ENST00000555116 USP21Q9UK80 565 aa19.78■□□□□ 0.76
SHMT2-217ENST00000555116 NRAPQ86VF7 1730 aa19.76■□□□□ 0.75
SHMT2-217ENST00000555116 USP31Q70CQ4 1352 aa19.76■□□□□ 0.75
SHMT2-217ENST00000555116 NME9Q86XW9 330 aa19.76■□□□□ 0.75
SHMT2-217ENST00000555116 KIAA0232Q92628 1395 aa19.76■□□□□ 0.75
SHMT2-217ENST00000555116 GCP02774 474 aa19.75■□□□□ 0.75
SHMT2-217ENST00000555116 ZRANB1Q9UGI0 708 aa19.75■□□□□ 0.75
SHMT2-217ENST00000555116 ATRNO75882 1429 aa19.75■□□□□ 0.75
SHMT2-217ENST00000555116 QTRT2Q9H974 415 aaKnown RBP19.75■□□□□ 0.75
SHMT2-217ENST00000555116 CPDO75976 1380 aa19.74■□□□□ 0.75
SHMT2-217ENST00000555116 ZC3H6P61129 1189 aaKnown RBP19.74■□□□□ 0.75
SHMT2-217ENST00000555116 POLR3GLQ9BT43 218 aa19.74■□□□□ 0.75
SHMT2-217ENST00000555116 UNC5CLQ8IV45 518 aa19.73■□□□□ 0.75
SHMT2-217ENST00000555116 PRDM11Q9NQV5 511 aa19.73■□□□□ 0.75
SHMT2-217ENST00000555116 KIF20BQ96Q89 1820 aa19.72■□□□□ 0.75
SHMT2-217ENST00000555116 TRPC5Q9UL62 973 aaPredicted RBP19.72■□□□□ 0.75
SHMT2-217ENST00000555116 NFAT5O94916 1531 aa19.72■□□□□ 0.75
SHMT2-217ENST00000555116 LMO7Q8WWI1 1683 aa19.72■□□□□ 0.75
SHMT2-217ENST00000555116 CARD14Q9BXL6 1004 aa19.71■□□□□ 0.75
SHMT2-217ENST00000555116 OVOS2A0A0J9YW53 1432 aa19.71■□□□□ 0.75
SHMT2-217ENST00000555116 OVOS2Q6IE36 1432 aa19.71■□□□□ 0.75
SHMT2-217ENST00000555116 CHRNA2Q15822 529 aa19.71■□□□□ 0.75
SHMT2-217ENST00000555116 COL18A1P39060 1754 aa19.7■□□□□ 0.74
SHMT2-217ENST00000555116 RXRBP28702 533 aa19.7■□□□□ 0.74
SHMT2-217ENST00000555116 BTG4Q9NY30 223 aa19.7■□□□□ 0.74
SHMT2-217ENST00000555116 KIF7Q2M1P5 1343 aa19.7■□□□□ 0.74
SHMT2-217ENST00000555116 RBM6P78332 1123 aaKnown RBP19.69■□□□□ 0.74
SHMT2-217ENST00000555116 KCNH5Q8NCM2 988 aa19.69■□□□□ 0.74
SHMT2-217ENST00000555116 CAMTA1Q9Y6Y1 1673 aa19.68■□□□□ 0.74
SHMT2-217ENST00000555116 NSD3Q9BZ95 1437 aa19.68■□□□□ 0.74
SHMT2-217ENST00000555116 GLI3P10071 1580 aa19.67■□□□□ 0.74
SHMT2-217ENST00000555116 CDK12Q9NYV4 1490 aaPredicted RBP19.67■□□□□ 0.74
SHMT2-217ENST00000555116 LTN1O94822 1766 aa19.67■□□□□ 0.74
SHMT2-217ENST00000555116 RGPD5Q99666 1765 aa19.67■□□□□ 0.74
SHMT2-217ENST00000555116 FYB1O15117 783 aa19.67■□□□□ 0.74
SHMT2-217ENST00000555116 VPS72Q15906 364 aa19.67■□□□□ 0.74
SHMT2-217ENST00000555116 SOX12O15370 315 aa19.66■□□□□ 0.74
SHMT2-217ENST00000555116 ARHGEF25Q86VW2 580 aa19.66■□□□□ 0.74
SHMT2-217ENST00000555116 AATKQ6ZMQ8 1374 aa19.65■□□□□ 0.74
SHMT2-217ENST00000555116 GJD4Q96KN9 370 aaPredicted RBP19.65■□□□□ 0.74
SHMT2-217ENST00000555116 PANK3Q9H999 370 aa19.65■□□□□ 0.74
SHMT2-217ENST00000555116 CCDC7Q96M83 1385 aa19.64■□□□□ 0.73
SHMT2-217ENST00000555116 COG3Q96JB2 828 aa19.64■□□□□ 0.73
SHMT2-217ENST00000555116 ZBTB7CA1YPR0 619 aa19.63■□□□□ 0.73
SHMT2-217ENST00000555116 GGNBP2Q9H3C7 697 aa19.63■□□□□ 0.73
SHMT2-217ENST00000555116 RGS12O14924 1447 aa19.63■□□□□ 0.73
SHMT2-217ENST00000555116 WASHC2AQ641Q2 1341 aa19.62■□□□□ 0.73
SHMT2-217ENST00000555116 ABCC6O95255 1503 aa19.61■□□□□ 0.73
SHMT2-217ENST00000555116 ANKRD26Q9UPS8 1709 aa19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms