RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 PLCH1Q4KWH8 1693 aa17.62■□□□□ 0.41
SHMT2-214ENST00000554604 NBPF8Q3BBV2 869 aa17.62■□□□□ 0.41
SHMT2-214ENST00000554604 CABP2Q9NPB3 220 aa17.62■□□□□ 0.41
SHMT2-214ENST00000554604 ACEP12821 1306 aa17.62■□□□□ 0.41
SHMT2-214ENST00000554604 NWD2Q9ULI1 1742 aa17.61■□□□□ 0.41
SHMT2-214ENST00000554604 UNC5CLQ8IV45 518 aa17.61■□□□□ 0.41
SHMT2-214ENST00000554604 EVC2Q86UK5 1308 aa17.61■□□□□ 0.41
SHMT2-214ENST00000554604 POLR3AO14802 1390 aaPredicted RBP17.61■□□□□ 0.41
SHMT2-214ENST00000554604 SLIT2O94813 1529 aa17.61■□□□□ 0.41
SHMT2-214ENST00000554604 PLEKHG3A1L390 1219 aa17.6■□□□□ 0.41
SHMT2-214ENST00000554604 PPIP5K1Q6PFW1 1433 aa17.6■□□□□ 0.41
SHMT2-214ENST00000554604 GJD4Q96KN9 370 aaPredicted RBP17.59■□□□□ 0.41
SHMT2-214ENST00000554604 CARD11Q9BXL7 1154 aa17.58■□□□□ 0.4
SHMT2-214ENST00000554604 CRYBG1Q9Y4K1 1723 aa17.58■□□□□ 0.4
SHMT2-214ENST00000554604 UPF1Q92900 1129 aaKnown RBP eCLIP17.57■□□□□ 0.4
SHMT2-214ENST00000554604 CCDC9Q9Y3X0 531 aaKnown RBP17.57■□□□□ 0.4
SHMT2-214ENST00000554604 COL14A1Q05707 1796 aaKnown RBP17.56■□□□□ 0.4
SHMT2-214ENST00000554604 FAM83GA6ND36 823 aa17.56■□□□□ 0.4
SHMT2-214ENST00000554604 NUTM2GQ5VZR2 741 aa17.56■□□□□ 0.4
SHMT2-214ENST00000554604 RALGAPBQ86X10 1494 aa17.56■□□□□ 0.4
SHMT2-214ENST00000554604 ABTB2Q8N961 1025 aa17.55■□□□□ 0.4
SHMT2-214ENST00000554604 CABP1Q9NZU7 370 aa17.55■□□□□ 0.4
SHMT2-214ENST00000554604 PHRF1Q9P1Y6 1649 aaKnown RBP17.54■□□□□ 0.4
SHMT2-214ENST00000554604 PRDM11Q9NQV5 511 aa17.54■□□□□ 0.4
SHMT2-214ENST00000554604 GLI3P10071 1580 aa17.53■□□□□ 0.4
SHMT2-214ENST00000554604 VPS72Q15906 364 aa17.53■□□□□ 0.4
SHMT2-214ENST00000554604 BTG4Q9NY30 223 aa17.53■□□□□ 0.4
SHMT2-214ENST00000554604 ATAD2Q6PL18 1390 aa17.53■□□□□ 0.4
SHMT2-214ENST00000554604 NRAPQ86VF7 1730 aa17.52■□□□□ 0.39
SHMT2-214ENST00000554604 BRD4O60885 1362 aaPredicted RBP17.51■□□□□ 0.39
SHMT2-214ENST00000554604 BRWD3Q6RI45 1802 aa17.5■□□□□ 0.39
SHMT2-214ENST00000554604 ZC3H6P61129 1189 aaKnown RBP17.5■□□□□ 0.39
SHMT2-214ENST00000554604 NLRP13Q86W25 1043 aa17.5■□□□□ 0.39
SHMT2-214ENST00000554604 KIAA0232Q92628 1395 aa17.5■□□□□ 0.39
SHMT2-214ENST00000554604 SBNO2Q9Y2G9 1366 aa17.5■□□□□ 0.39
SHMT2-214ENST00000554604 EP400Q96L91 3159 aa17.49■□□□□ 0.39
SHMT2-214ENST00000554604 USP6P35125 1406 aa17.49■□□□□ 0.39
SHMT2-214ENST00000554604 AKAP12Q02952 1782 aa17.49■□□□□ 0.39
SHMT2-214ENST00000554604 ZNF316A6NFI3 1004 aaPredicted RBP17.49■□□□□ 0.39
SHMT2-214ENST00000554604 CHRNA2Q15822 529 aa17.48■□□□□ 0.39
SHMT2-214ENST00000554604 A0A0G2JS52 829 aa17.47■□□□□ 0.39
SHMT2-214ENST00000554604 MYT1Q01538 1121 aa17.47■□□□□ 0.39
SHMT2-214ENST00000554604 ZNF692Q9BU19 519 aaPredicted RBP17.47■□□□□ 0.39
SHMT2-214ENST00000554604 NRKQ7Z2Y5 1582 aa17.46■□□□□ 0.39
SHMT2-214ENST00000554604 NLRP6P59044 892 aa17.46■□□□□ 0.39
SHMT2-214ENST00000554604 SEPT12Q8IYM1 358 aa17.46■□□□□ 0.39
SHMT2-214ENST00000554604 USP19O94966 1318 aa17.46■□□□□ 0.38
SHMT2-214ENST00000554604 GCP02774 474 aa17.44■□□□□ 0.38
SHMT2-214ENST00000554604 STRN4Q9NRL3 753 aa17.44■□□□□ 0.38
SHMT2-214ENST00000554604 PIK3C2AO00443 1686 aa17.44■□□□□ 0.38
SHMT2-214ENST00000554604 KTN1Q86UP2 1357 aaKnown RBP17.43■□□□□ 0.38
SHMT2-214ENST00000554604 EVA1CP58658 441 aa17.43■□□□□ 0.38
SHMT2-214ENST00000554604 FAM98CQ17RN3 349 aaKnown RBP17.43■□□□□ 0.38
SHMT2-214ENST00000554604 TMC1Q8TDI8 760 aa17.43■□□□□ 0.38
SHMT2-214ENST00000554604 TIMELESSQ9UNS1 1208 aa17.43■□□□□ 0.38
SHMT2-214ENST00000554604 ONECUT3O60422 494 aaPredicted RBP17.42■□□□□ 0.38
SHMT2-214ENST00000554604 SPATA31A5Q5VU36 1347 aa17.42■□□□□ 0.38
SHMT2-214ENST00000554604 TTC21BQ7Z4L5 1316 aa17.42■□□□□ 0.38
SHMT2-214ENST00000554604 SPATA31A7Q8IWB4 1347 aa17.42■□□□□ 0.38
SHMT2-214ENST00000554604 CPDO75976 1380 aa17.41■□□□□ 0.38
SHMT2-214ENST00000554604 MON2Q7Z3U7 1717 aa17.41■□□□□ 0.38
SHMT2-214ENST00000554604 CPSF1Q10570 1443 aaKnown RBP17.41■□□□□ 0.38
SHMT2-214ENST00000554604 SSH2Q76I76 1423 aa17.41■□□□□ 0.38
SHMT2-214ENST00000554604 ST20-MTHFSA0A0A6YYL1 179 aa17.41■□□□□ 0.38
SHMT2-214ENST00000554604 ZBTB7CA1YPR0 619 aa17.41■□□□□ 0.38
SHMT2-214ENST00000554604 SLC24A1O60721 1099 aa17.41■□□□□ 0.38
SHMT2-214ENST00000554604 TTC21AQ8NDW8 1320 aa17.41■□□□□ 0.38
SHMT2-214ENST00000554604 KRT27Q7Z3Y8 459 aa17.4■□□□□ 0.38
SHMT2-214ENST00000554604 CCDC125Q86Z20 511 aa17.4■□□□□ 0.38
SHMT2-214ENST00000554604 HDGFL2Q7Z4V5 671 aaPredicted RBP17.39■□□□□ 0.37
SHMT2-214ENST00000554604 LMO7Q8WWI1 1683 aa17.39■□□□□ 0.37
SHMT2-214ENST00000554604 CAMTA1Q9Y6Y1 1673 aa17.39■□□□□ 0.37
SHMT2-214ENST00000554604 SLIT3O75094 1523 aa17.38■□□□□ 0.37
SHMT2-214ENST00000554604 USP35Q9P2H5 1018 aa17.38■□□□□ 0.37
SHMT2-214ENST00000554604 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.37■□□□□ 0.37
SHMT2-214ENST00000554604 PUS7Q96PZ0 661 aaKnown RBP17.37■□□□□ 0.37
SHMT2-214ENST00000554604 TESK2Q96S53 571 aa17.37■□□□□ 0.37
SHMT2-214ENST00000554604 SLC12A5Q9H2X9 1139 aa17.37■□□□□ 0.37
SHMT2-214ENST00000554604 TERF2IPQ9NYB0 399 aa17.37■□□□□ 0.37
SHMT2-214ENST00000554604 SPATA31A1Q5TZJ5 1347 aa17.37■□□□□ 0.37
SHMT2-214ENST00000554604 USP47Q96K76 1375 aa17.37■□□□□ 0.37
SHMT2-214ENST00000554604 SOX12O15370 315 aa17.36■□□□□ 0.37
SHMT2-214ENST00000554604 KCNH5Q8NCM2 988 aa17.36■□□□□ 0.37
SHMT2-214ENST00000554604 SF3B2Q13435 895 aaKnown RBP17.35■□□□□ 0.37
SHMT2-214ENST00000554604 DIEXFQ68CQ4 756 aaKnown RBP17.35■□□□□ 0.37
SHMT2-214ENST00000554604 LARP1Q6PKG0 1096 aaKnown RBP17.35■□□□□ 0.37
SHMT2-214ENST00000554604 THSD7AQ9UPZ6 1657 aa17.35■□□□□ 0.37
SHMT2-214ENST00000554604 BLMP54132 1417 aaPredicted RBP17.34■□□□□ 0.37
SHMT2-214ENST00000554604 RGPD5Q99666 1765 aa17.34■□□□□ 0.37
SHMT2-214ENST00000554604 CD163L1Q9NR16 1453 aa17.34■□□□□ 0.37
SHMT2-214ENST00000554604 COL5A2P05997 1499 aaPredicted RBP17.33■□□□□ 0.37
SHMT2-214ENST00000554604 AATKQ6ZMQ8 1374 aa17.33■□□□□ 0.36
SHMT2-214ENST00000554604 EDC4Q6P2E9 1401 aaKnown RBP17.32■□□□□ 0.36
SHMT2-214ENST00000554604 NINLQ9Y2I6 1382 aa17.32■□□□□ 0.36
SHMT2-214ENST00000554604 TMF1P82094 1093 aa17.32■□□□□ 0.36
SHMT2-214ENST00000554604 COL18A1P39060 1754 aa17.32■□□□□ 0.36
SHMT2-214ENST00000554604 A0A1W2PP64 1363 aa17.31■□□□□ 0.36
SHMT2-214ENST00000554604 NME9Q86XW9 330 aa17.31■□□□□ 0.36
SHMT2-214ENST00000554604 TCP11L2Q8N4U5 519 aa17.31■□□□□ 0.36
SHMT2-214ENST00000554604 USP54Q70EL1 1684 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms