RNA–Protein interactions for RNA: ENST00000554310.5

SHMT2-211, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 579 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-211ENST00000554310 RXRBP28702 533 aa18.55■□□□□ 0.56
SHMT2-211ENST00000554310 USP21Q9UK80 565 aa18.55■□□□□ 0.56
SHMT2-211ENST00000554310 SLIT2O94813 1529 aa18.54■□□□□ 0.56
SHMT2-211ENST00000554310 PHRF1Q9P1Y6 1649 aaKnown RBP18.54■□□□□ 0.56
SHMT2-211ENST00000554310 ATRNO75882 1429 aa18.54■□□□□ 0.56
SHMT2-211ENST00000554310 BRD4O60885 1362 aaPredicted RBP18.54■□□□□ 0.56
SHMT2-211ENST00000554310 BCL9LQ86UU0 1499 aa18.53■□□□□ 0.56
SHMT2-211ENST00000554310 TIMELESSQ9UNS1 1208 aa18.53■□□□□ 0.56
SHMT2-211ENST00000554310 PAK3O75914 559 aaPredicted RBP18.52■□□□□ 0.56
SHMT2-211ENST00000554310 RBM6P78332 1123 aaKnown RBP18.52■□□□□ 0.56
SHMT2-211ENST00000554310 CABLES1Q8TDN4 633 aa18.52■□□□□ 0.56
SHMT2-211ENST00000554310 QTRT2Q9H974 415 aaKnown RBP18.52■□□□□ 0.56
SHMT2-211ENST00000554310 TRPC5Q9UL62 973 aaPredicted RBP18.52■□□□□ 0.56
SHMT2-211ENST00000554310 ATAD2Q6PL18 1390 aa18.52■□□□□ 0.55
SHMT2-211ENST00000554310 AKAP12Q02952 1782 aa18.51■□□□□ 0.55
SHMT2-211ENST00000554310 COL14A1Q05707 1796 aaKnown RBP18.51■□□□□ 0.55
SHMT2-211ENST00000554310 RGS12O14924 1447 aa18.5■□□□□ 0.55
SHMT2-211ENST00000554310 USP6P35125 1406 aa18.5■□□□□ 0.55
SHMT2-211ENST00000554310 NRAPQ86VF7 1730 aa18.49■□□□□ 0.55
SHMT2-211ENST00000554310 NRKQ7Z2Y5 1582 aa18.48■□□□□ 0.55
SHMT2-211ENST00000554310 PLEKHG5O94827 1062 aa18.48■□□□□ 0.55
SHMT2-211ENST00000554310 CABP1Q9NZU7 370 aa18.48■□□□□ 0.55
SHMT2-211ENST00000554310 MON2Q7Z3U7 1717 aa18.47■□□□□ 0.55
SHMT2-211ENST00000554310 UNC5CLQ8IV45 518 aa18.46■□□□□ 0.55
SHMT2-211ENST00000554310 CCER1Q8TC90 406 aaPredicted RBP18.45■□□□□ 0.54
SHMT2-211ENST00000554310 SSH2Q76I76 1423 aa18.45■□□□□ 0.54
SHMT2-211ENST00000554310 GLI3P10071 1580 aa18.45■□□□□ 0.54
SHMT2-211ENST00000554310 PIK3C2AO00443 1686 aa18.44■□□□□ 0.54
SHMT2-211ENST00000554310 USP47Q96K76 1375 aa18.44■□□□□ 0.54
SHMT2-211ENST00000554310 USP19O94966 1318 aa18.44■□□□□ 0.54
SHMT2-211ENST00000554310 CPSF1Q10570 1443 aaKnown RBP18.43■□□□□ 0.54
SHMT2-211ENST00000554310 SLC24A1O60721 1099 aa18.43■□□□□ 0.54
SHMT2-211ENST00000554310 ABTB2Q8N961 1025 aa18.43■□□□□ 0.54
SHMT2-211ENST00000554310 FAM83GA6ND36 823 aa18.42■□□□□ 0.54
SHMT2-211ENST00000554310 GJD4Q96KN9 370 aaPredicted RBP18.42■□□□□ 0.54
SHMT2-211ENST00000554310 PUS7Q96PZ0 661 aaKnown RBP18.42■□□□□ 0.54
SHMT2-211ENST00000554310 SLIT3O75094 1523 aa18.41■□□□□ 0.54
SHMT2-211ENST00000554310 ST20-MTHFSA0A0A6YYL1 179 aa18.41■□□□□ 0.54
SHMT2-211ENST00000554310 TESK2Q96S53 571 aa18.41■□□□□ 0.54
SHMT2-211ENST00000554310 ZNF692Q9BU19 519 aaPredicted RBP18.41■□□□□ 0.54
SHMT2-211ENST00000554310 KIAA0232Q92628 1395 aa18.41■□□□□ 0.54
SHMT2-211ENST00000554310 VPS72Q15906 364 aa18.4■□□□□ 0.54
SHMT2-211ENST00000554310 NUTM2GQ5VZR2 741 aa18.4■□□□□ 0.54
SHMT2-211ENST00000554310 NLRP13Q86W25 1043 aa18.4■□□□□ 0.54
SHMT2-211ENST00000554310 PRDM11Q9NQV5 511 aa18.4■□□□□ 0.54
SHMT2-211ENST00000554310 NINLQ9Y2I6 1382 aa18.4■□□□□ 0.54
SHMT2-211ENST00000554310 CD163L1Q9NR16 1453 aa18.39■□□□□ 0.54
SHMT2-211ENST00000554310 USP54Q70EL1 1684 aa18.39■□□□□ 0.53
SHMT2-211ENST00000554310 CPDO75976 1380 aa18.39■□□□□ 0.53
SHMT2-211ENST00000554310 KTN1Q86UP2 1357 aaKnown RBP18.39■□□□□ 0.53
SHMT2-211ENST00000554310 LMO7Q8WWI1 1683 aa18.38■□□□□ 0.53
SHMT2-211ENST00000554310 BTG4Q9NY30 223 aa18.38■□□□□ 0.53
SHMT2-211ENST00000554310 TTC21AQ8NDW8 1320 aa18.38■□□□□ 0.53
SHMT2-211ENST00000554310 TTC21BQ7Z4L5 1316 aa18.36■□□□□ 0.53
SHMT2-211ENST00000554310 NLRP6P59044 892 aa18.35■□□□□ 0.53
SHMT2-211ENST00000554310 TMC1Q8TDI8 760 aa18.35■□□□□ 0.53
SHMT2-211ENST00000554310 EDC4Q6P2E9 1401 aaKnown RBP18.34■□□□□ 0.53
SHMT2-211ENST00000554310 GCP02774 474 aa18.34■□□□□ 0.53
SHMT2-211ENST00000554310 ZC3H6P61129 1189 aaKnown RBP18.34■□□□□ 0.53
SHMT2-211ENST00000554310 HDGFL2Q7Z4V5 671 aaPredicted RBP18.34■□□□□ 0.53
SHMT2-211ENST00000554310 CCDC9Q9Y3X0 531 aaKnown RBP18.34■□□□□ 0.53
SHMT2-211ENST00000554310 A0A1W2PP64 1363 aa18.33■□□□□ 0.53
SHMT2-211ENST00000554310 TMF1P82094 1093 aa18.33■□□□□ 0.52
SHMT2-211ENST00000554310 TERF2IPQ9NYB0 399 aa18.33■□□□□ 0.52
SHMT2-211ENST00000554310 BRWD3Q6RI45 1802 aa18.33■□□□□ 0.52
SHMT2-211ENST00000554310 ZEB1P37275 1124 aaPredicted RBP18.32■□□□□ 0.52
SHMT2-211ENST00000554310 CHRNA2Q15822 529 aa18.32■□□□□ 0.52
SHMT2-211ENST00000554310 CAMTA1Q9Y6Y1 1673 aa18.31■□□□□ 0.52
SHMT2-211ENST00000554310 UPF1Q92900 1129 aaKnown RBP eCLIP18.31■□□□□ 0.52
SHMT2-211ENST00000554310 SLC12A5Q9H2X9 1139 aa18.31■□□□□ 0.52
SHMT2-211ENST00000554310 NFAT5O94916 1531 aa18.31■□□□□ 0.52
SHMT2-211ENST00000554310 THSD7AQ9UPZ6 1657 aa18.31■□□□□ 0.52
SHMT2-211ENST00000554310 SPATA31A5Q5VU36 1347 aa18.3■□□□□ 0.52
SHMT2-211ENST00000554310 SPATA31A7Q8IWB4 1347 aa18.3■□□□□ 0.52
SHMT2-211ENST00000554310 ABCC6O95255 1503 aa18.3■□□□□ 0.52
SHMT2-211ENST00000554310 CDCA8Q53HL2 280 aa18.3■□□□□ 0.52
SHMT2-211ENST00000554310 USP31Q70CQ4 1352 aa18.3■□□□□ 0.52
SHMT2-211ENST00000554310 ONECUT3O60422 494 aaPredicted RBP18.29■□□□□ 0.52
SHMT2-211ENST00000554310 KCNH5Q8NCM2 988 aa18.29■□□□□ 0.52
SHMT2-211ENST00000554310 COL18A1P39060 1754 aa18.29■□□□□ 0.52
SHMT2-211ENST00000554310 AATKQ6ZMQ8 1374 aa18.29■□□□□ 0.52
SHMT2-211ENST00000554310 MYOM1P52179 1685 aa18.28■□□□□ 0.52
SHMT2-211ENST00000554310 COL5A2P05997 1499 aaPredicted RBP18.28■□□□□ 0.52
SHMT2-211ENST00000554310 ANKRD36BQ8N2N9 1353 aa18.28■□□□□ 0.52
SHMT2-211ENST00000554310 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.27■□□□□ 0.52
SHMT2-211ENST00000554310 SEPT12Q8IYM1 358 aa18.27■□□□□ 0.52
SHMT2-211ENST00000554310 SPATA31A1Q5TZJ5 1347 aa18.26■□□□□ 0.51
SHMT2-211ENST00000554310 STRN4Q9NRL3 753 aa18.26■□□□□ 0.51
SHMT2-211ENST00000554310 OVOS2A0A0J9YW53 1432 aa18.25■□□□□ 0.51
SHMT2-211ENST00000554310 OVOS2Q6IE36 1432 aa18.25■□□□□ 0.51
SHMT2-211ENST00000554310 EP400Q96L91 3159 aa18.25■□□□□ 0.51
SHMT2-211ENST00000554310 FAM98CQ17RN3 349 aaKnown RBP18.25■□□□□ 0.51
SHMT2-211ENST00000554310 LTN1O94822 1766 aa18.25■□□□□ 0.51
SHMT2-211ENST00000554310 EVA1CP58658 441 aa18.24■□□□□ 0.51
SHMT2-211ENST00000554310 NME9Q86XW9 330 aa18.24■□□□□ 0.51
SHMT2-211ENST00000554310 A0A0G2JS52 829 aa18.23■□□□□ 0.51
SHMT2-211ENST00000554310 MYT1Q01538 1121 aa18.23■□□□□ 0.51
SHMT2-211ENST00000554310 CRB1P82279 1406 aa18.23■□□□□ 0.51
SHMT2-211ENST00000554310 ZBTB7CA1YPR0 619 aa18.22■□□□□ 0.51
SHMT2-211ENST00000554310 ARHGEF25Q86VW2 580 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms