RNA–Protein interactions for RNA: ENST00000552800.2

TMEM116-216, Transcript of transmembrane protein 116, humanhuman

TSL 3

Gene TMEM116, Length 485 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM116-216ENST00000552800 YTHDC1Q96MU7 727 aaKnown RBP13.29□□□□□ -0.28
TMEM116-216ENST00000552800 SLC12A5Q9H2X9 1139 aa13.29□□□□□ -0.28
TMEM116-216ENST00000552800 ADGRB2O60241 1585 aa13.28□□□□□ -0.28
TMEM116-216ENST00000552800 POGKQ9P215 609 aa13.28□□□□□ -0.28
TMEM116-216ENST00000552800 ZBED9Q6R2W3 1325 aa13.28□□□□□ -0.28
TMEM116-216ENST00000552800 PTCH1Q13635 1447 aa13.28□□□□□ -0.28
TMEM116-216ENST00000552800 CD163L1Q9NR16 1453 aa13.28□□□□□ -0.28
TMEM116-216ENST00000552800 CDK19Q9BWU1 502 aa13.27□□□□□ -0.29
TMEM116-216ENST00000552800 WASLO00401 505 aaPredicted RBP13.26□□□□□ -0.29
TMEM116-216ENST00000552800 PPP2R1AP30153 589 aa13.26□□□□□ -0.29
TMEM116-216ENST00000552800 STK26Q9P289 416 aa13.26□□□□□ -0.29
TMEM116-216ENST00000552800 ATP7BP35670 1465 aa13.25□□□□□ -0.29
TMEM116-216ENST00000552800 CPSF1Q10570 1443 aaKnown RBP13.25□□□□□ -0.29
TMEM116-216ENST00000552800 PTPRUQ92729 1446 aa13.25□□□□□ -0.29
TMEM116-216ENST00000552800 CGNL1Q0VF96 1302 aa13.25□□□□□ -0.29
TMEM116-216ENST00000552800 POLR3AO14802 1390 aaPredicted RBP13.24□□□□□ -0.29
TMEM116-216ENST00000552800 ANKLE2Q86XL3 938 aa13.24□□□□□ -0.29
TMEM116-216ENST00000552800 TERF2IPQ9NYB0 399 aa13.24□□□□□ -0.29
TMEM116-216ENST00000552800 ROBO2Q9HCK4 1378 aa13.23□□□□□ -0.29
TMEM116-216ENST00000552800 PLEKHH1Q9ULM0 1364 aa13.23□□□□□ -0.29
TMEM116-216ENST00000552800 XRN1Q8IZH2 1706 aaKnown RBP13.23□□□□□ -0.29
TMEM116-216ENST00000552800 WAPLQ7Z5K2 1190 aa13.23□□□□□ -0.29
TMEM116-216ENST00000552800 CABP2Q9NPB3 220 aa13.23□□□□□ -0.29
TMEM116-216ENST00000552800 PLEKHG3A1L390 1219 aa13.22□□□□□ -0.29
TMEM116-216ENST00000552800 CC2D1BQ5T0F9 858 aaKnown RBP13.22□□□□□ -0.29
TMEM116-216ENST00000552800 NGEFQ8N5V2 710 aa13.22□□□□□ -0.29
TMEM116-216ENST00000552800 RTN4Q9NQC3 1192 aaKnown RBP13.22□□□□□ -0.29
TMEM116-216ENST00000552800 CCDC61Q9Y6R9 512 aa13.22□□□□□ -0.29
TMEM116-216ENST00000552800 NSD3Q9BZ95 1437 aa13.22□□□□□ -0.29
TMEM116-216ENST00000552800 CDC42BPGQ6DT37 1551 aa13.21□□□□□ -0.29
TMEM116-216ENST00000552800 CHD2O14647 1828 aaKnown RBP13.21□□□□□ -0.29
TMEM116-216ENST00000552800 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.21□□□□□ -0.3
TMEM116-216ENST00000552800 BLMP54132 1417 aaPredicted RBP13.21□□□□□ -0.3
TMEM116-216ENST00000552800 A0A1W2PP64 1363 aa13.2□□□□□ -0.3
TMEM116-216ENST00000552800 MINK1Q8N4C8 1332 aaPredicted RBP13.2□□□□□ -0.3
TMEM116-216ENST00000552800 NUBP1P53384 320 aa13.2□□□□□ -0.3
TMEM116-216ENST00000552800 HNRNPUQ00839 825 aaKnown RBP eCLIP13.2□□□□□ -0.3
TMEM116-216ENST00000552800 FAM9BQ8IZU0 186 aa13.2□□□□□ -0.3
TMEM116-216ENST00000552800 AMOTL2Q9Y2J4 779 aa13.2□□□□□ -0.3
TMEM116-216ENST00000552800 SRPK2P78362 688 aaKnown RBP13.19□□□□□ -0.3
TMEM116-216ENST00000552800 ANKRD26Q9UPS8 1709 aa13.19□□□□□ -0.3
TMEM116-216ENST00000552800 FYB1O15117 783 aa13.18□□□□□ -0.3
TMEM116-216ENST00000552800 PDE3BQ13370 1112 aa13.18□□□□□ -0.3
TMEM116-216ENST00000552800 CABP1Q9NZU7 370 aa13.18□□□□□ -0.3
TMEM116-216ENST00000552800 HDGFL2Q7Z4V5 671 aaPredicted RBP13.17□□□□□ -0.3
TMEM116-216ENST00000552800 NUDT16Q96DE0 195 aaKnown RBP13.17□□□□□ -0.3
TMEM116-216ENST00000552800 PNPLA6Q8IY17 1366 aa13.17□□□□□ -0.3
TMEM116-216ENST00000552800 EDC4Q6P2E9 1401 aaKnown RBP13.16□□□□□ -0.3
TMEM116-216ENST00000552800 PELP1Q8IZL8 1130 aaKnown RBP13.16□□□□□ -0.3
TMEM116-216ENST00000552800 SLC26A8Q96RN1 970 aa13.16□□□□□ -0.3
TMEM116-216ENST00000552800 TOPAZ1Q8N9V7 1692 aa13.15□□□□□ -0.3
TMEM116-216ENST00000552800 ANKARQ7Z5J8 1434 aa13.15□□□□□ -0.3
TMEM116-216ENST00000552800 AKAP12Q02952 1782 aa13.15□□□□□ -0.3
TMEM116-216ENST00000552800 SAFB2Q14151 953 aaKnown RBP eCLIP13.15□□□□□ -0.3
TMEM116-216ENST00000552800 MORC1Q86VD1 984 aa13.15□□□□□ -0.3
TMEM116-216ENST00000552800 RASEFQ8IZ41 740 aa13.15□□□□□ -0.3
TMEM116-216ENST00000552800 GTF3C3Q9Y5Q9 886 aa13.15□□□□□ -0.3
TMEM116-216ENST00000552800 SSH2Q76I76 1423 aa13.14□□□□□ -0.31
TMEM116-216ENST00000552800 SMG6Q86US8 1419 aaKnown RBP13.14□□□□□ -0.31
TMEM116-216ENST00000552800 MON2Q7Z3U7 1717 aa13.14□□□□□ -0.31
TMEM116-216ENST00000552800 AATKQ6ZMQ8 1374 aa13.14□□□□□ -0.31
TMEM116-216ENST00000552800 CIZ1Q9ULV3 898 aaPredicted RBP13.13□□□□□ -0.31
TMEM116-216ENST00000552800 ADAMTS8Q9UP79 889 aa13.13□□□□□ -0.31
TMEM116-216ENST00000552800 NPHP4O75161 1426 aaPredicted RBP13.13□□□□□ -0.31
TMEM116-216ENST00000552800 PPIP5K1Q6PFW1 1433 aa13.13□□□□□ -0.31
TMEM116-216ENST00000552800 NCOA3Q9Y6Q9 1424 aa13.13□□□□□ -0.31
TMEM116-216ENST00000552800 PRR36Q9H6K5 1346 aa13.13□□□□□ -0.31
TMEM116-216ENST00000552800 NWD1Q149M9 1564 aa13.12□□□□□ -0.31
TMEM116-216ENST00000552800 KCNA6P17658 529 aa13.12□□□□□ -0.31
TMEM116-216ENST00000552800 ERICH6BQ5W0A0 696 aa13.12□□□□□ -0.31
TMEM116-216ENST00000552800 BCANQ96GW7 911 aa13.12□□□□□ -0.31
TMEM116-216ENST00000552800 RNF123Q5XPI4 1314 aa13.12□□□□□ -0.31
TMEM116-216ENST00000552800 ZNF521Q96K83 1311 aa13.12□□□□□ -0.31
TMEM116-216ENST00000552800 LCE2DQ5TA82 110 aaPredicted RBP13.11□□□□□ -0.31
TMEM116-216ENST00000552800 DCAF8Q5TAQ9 597 aa13.1□□□□□ -0.31
TMEM116-216ENST00000552800 FAM212AQ96EL1 285 aa13.1□□□□□ -0.31
TMEM116-216ENST00000552800 KIF20BQ96Q89 1820 aa13.09□□□□□ -0.31
TMEM116-216ENST00000552800 MTHFSP49914 203 aa13.09□□□□□ -0.31
TMEM116-216ENST00000552800 ITSN1Q15811 1721 aa13.09□□□□□ -0.31
TMEM116-216ENST00000552800 PHF12Q96QT6 1004 aa13.09□□□□□ -0.31
TMEM116-216ENST00000552800 USP31Q70CQ4 1352 aa13.08□□□□□ -0.31
TMEM116-216ENST00000552800 POTEJP0CG39 1038 aa13.08□□□□□ -0.32
TMEM116-216ENST00000552800 TRMT2AQ8IZ69 625 aaKnown RBP13.08□□□□□ -0.32
TMEM116-216ENST00000552800 TSPYL2Q9H2G4 693 aaPredicted RBP13.08□□□□□ -0.32
TMEM116-216ENST00000552800 SHPRHQ149N8 1683 aa13.08□□□□□ -0.32
TMEM116-216ENST00000552800 FMN2Q9NZ56 1722 aa13.08□□□□□ -0.32
TMEM116-216ENST00000552800 PAK3O75914 559 aaPredicted RBP13.07□□□□□ -0.32
TMEM116-216ENST00000552800 MAMSTRQ6ZN01 415 aa13.07□□□□□ -0.32
TMEM116-216ENST00000552800 METRNQ9UJH8 293 aa13.07□□□□□ -0.32
TMEM116-216ENST00000552800 NUDCQ9Y266 331 aa13.07□□□□□ -0.32
TMEM116-216ENST00000552800 COL3A1P02461 1466 aaPredicted RBP13.07□□□□□ -0.32
TMEM116-216ENST00000552800 TTC21AQ8NDW8 1320 aa13.07□□□□□ -0.32
TMEM116-216ENST00000552800 NRKQ7Z2Y5 1582 aa13.07□□□□□ -0.32
TMEM116-216ENST00000552800 USP6P35125 1406 aa13.06□□□□□ -0.32
TMEM116-216ENST00000552800 GSE1Q14687 1217 aa13.06□□□□□ -0.32
TMEM116-216ENST00000552800 WDR43Q15061 677 aaKnown RBP eCLIP13.06□□□□□ -0.32
TMEM116-216ENST00000552800 CCDC27Q2M243 656 aa13.06□□□□□ -0.32
TMEM116-216ENST00000552800 CFAP53Q96M91 514 aa13.06□□□□□ -0.32
TMEM116-216ENST00000552800 LRRC7Q96NW7 1537 aa13.06□□□□□ -0.32
TMEM116-216ENST00000552800 USP54Q70EL1 1684 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms