RNA–Protein interactions for RNA: ENST00000550841.1

NEK3-202, Transcript of NIMA related kinase 3, humanhuman

TSL 4

Gene NEK3, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-202ENST00000550841 SPATA31A3Q5VYP0 1347 aa29.66■■■□□ 2.34
NEK3-202ENST00000550841 ZNF772Q68DY9 489 aaPredicted RBP29.65■■■□□ 2.34
NEK3-202ENST00000550841 ANKRD36BQ8N2N9 1353 aa29.64■■■□□ 2.33
NEK3-202ENST00000550841 USP6P35125 1406 aa29.63■■■□□ 2.33
NEK3-202ENST00000550841 CCDC7Q96M83 1385 aa29.63■■■□□ 2.33
NEK3-202ENST00000550841 NUTM2BA6NNL0 878 aaPredicted RBP29.62■■■□□ 2.33
NEK3-202ENST00000550841 NUTM2EB1AL46 878 aaPredicted RBP29.62■■■□□ 2.33
NEK3-202ENST00000550841 LMOD2Q6P5Q4 547 aa29.62■■■□□ 2.33
NEK3-202ENST00000550841 NUTM2AQ8IVF1 878 aaPredicted RBP29.62■■■□□ 2.33
NEK3-202ENST00000550841 ARHGEF10O15013 1369 aa29.61■■■□□ 2.33
NEK3-202ENST00000550841 CD163L1Q9NR16 1453 aa29.61■■■□□ 2.33
NEK3-202ENST00000550841 LRP6O75581 1613 aa29.6■■■□□ 2.33
NEK3-202ENST00000550841 AKAP12Q02952 1782 aa29.6■■■□□ 2.33
NEK3-202ENST00000550841 WASHC2AQ641Q2 1341 aa29.6■■■□□ 2.33
NEK3-202ENST00000550841 A0A1W2PP64 1363 aa29.6■■■□□ 2.33
NEK3-202ENST00000550841 TNS3Q68CZ2 1445 aa29.6■■■□□ 2.33
NEK3-202ENST00000550841 TTC21AQ8NDW8 1320 aa29.59■■■□□ 2.33
NEK3-202ENST00000550841 TTC21BQ7Z4L5 1316 aa29.58■■■□□ 2.33
NEK3-202ENST00000550841 ABTB2Q8N961 1025 aa29.57■■■□□ 2.32
NEK3-202ENST00000550841 TRPM3Q9HCF6 1732 aaPredicted RBP29.57■■■□□ 2.32
NEK3-202ENST00000550841 EDC4Q6P2E9 1401 aaKnown RBP29.56■■■□□ 2.32
NEK3-202ENST00000550841 SSH2Q76I76 1423 aa29.56■■■□□ 2.32
NEK3-202ENST00000550841 PNPLA6Q8IY17 1366 aa29.56■■■□□ 2.32
NEK3-202ENST00000550841 SHPRHQ149N8 1683 aa29.56■■■□□ 2.32
NEK3-202ENST00000550841 PANK3Q9H999 370 aa29.55■■■□□ 2.32
NEK3-202ENST00000550841 MYOM1P52179 1685 aa29.54■■■□□ 2.32
NEK3-202ENST00000550841 NLRP13Q86W25 1043 aa29.53■■■□□ 2.32
NEK3-202ENST00000550841 MON2Q7Z3U7 1717 aa29.53■■■□□ 2.32
NEK3-202ENST00000550841 SUGP2Q8IX01 1082 aaKnown RBP eCLIP29.52■■■□□ 2.32
NEK3-202ENST00000550841 RXRBP28702 533 aa29.5■■■□□ 2.31
NEK3-202ENST00000550841 NLRP6P59044 892 aa29.49■■■□□ 2.31
NEK3-202ENST00000550841 CARD14Q9BXL6 1004 aa29.49■■■□□ 2.31
NEK3-202ENST00000550841 ALS2Q96Q42 1657 aa29.49■■■□□ 2.31
NEK3-202ENST00000550841 ZNF316A6NFI3 1004 aaPredicted RBP29.47■■■□□ 2.31
NEK3-202ENST00000550841 HAP1P54257 671 aaPredicted RBP29.47■■■□□ 2.31
NEK3-202ENST00000550841 NUTM2GQ5VZR2 741 aa29.46■■■□□ 2.31
NEK3-202ENST00000550841 AFF2P51816 1311 aa29.45■■■□□ 2.31
NEK3-202ENST00000550841 COL22A1Q8NFW1 1626 aaPredicted RBP29.45■■■□□ 2.31
NEK3-202ENST00000550841 KNSTRNQ9Y448 316 aa29.45■■■□□ 2.31
NEK3-202ENST00000550841 NRKQ7Z2Y5 1582 aa29.44■■■□□ 2.3
NEK3-202ENST00000550841 NSD3Q9BZ95 1437 aa29.44■■■□□ 2.3
NEK3-202ENST00000550841 CGNL1Q0VF96 1302 aa29.44■■■□□ 2.3
NEK3-202ENST00000550841 NME9Q86XW9 330 aa29.43■■■□□ 2.3
NEK3-202ENST00000550841 USP31Q70CQ4 1352 aa29.42■■■□□ 2.3
NEK3-202ENST00000550841 C8orf37Q96NL8 207 aa29.42■■■□□ 2.3
NEK3-202ENST00000550841 FYB1O15117 783 aa29.41■■■□□ 2.3
NEK3-202ENST00000550841 PLEKHG5O94827 1062 aa29.41■■■□□ 2.3
NEK3-202ENST00000550841 CABLES1Q8TDN4 633 aa29.41■■■□□ 2.3
NEK3-202ENST00000550841 COG3Q96JB2 828 aa29.4■■■□□ 2.3
NEK3-202ENST00000550841 KCNH5Q8NCM2 988 aa29.39■■■□□ 2.3
NEK3-202ENST00000550841 USP19O94966 1318 aa29.39■■■□□ 2.3
NEK3-202ENST00000550841 PIK3C2AO00443 1686 aa29.37■■■□□ 2.29
NEK3-202ENST00000550841 GCP02774 474 aa29.37■■■□□ 2.29
NEK3-202ENST00000550841 UPF1Q92900 1129 aaKnown RBP eCLIP29.37■■■□□ 2.29
NEK3-202ENST00000550841 QTRT2Q9H974 415 aaKnown RBP29.37■■■□□ 2.29
NEK3-202ENST00000550841 ZRANB1Q9UGI0 708 aa29.36■■■□□ 2.29
NEK3-202ENST00000550841 PER1O15534 1290 aaPredicted RBP29.35■■■□□ 2.29
NEK3-202ENST00000550841 ADAMTS2O95450 1211 aa29.35■■■□□ 2.29
NEK3-202ENST00000550841 NGLY1Q96IV0 654 aa29.35■■■□□ 2.29
NEK3-202ENST00000550841 GGNBP2Q9H3C7 697 aa29.35■■■□□ 2.29
NEK3-202ENST00000550841 DDX10Q13206 875 aaKnown RBP29.32■■■□□ 2.28
NEK3-202ENST00000550841 NSD2O96028 1365 aa29.31■■■□□ 2.28
NEK3-202ENST00000550841 RBM6P78332 1123 aaKnown RBP29.31■■■□□ 2.28
NEK3-202ENST00000550841 CDK12Q9NYV4 1490 aaPredicted RBP29.3■■■□□ 2.28
NEK3-202ENST00000550841 OVOS2A0A0J9YW53 1432 aa29.29■■■□□ 2.28
NEK3-202ENST00000550841 OVOS2Q6IE36 1432 aa29.29■■■□□ 2.28
NEK3-202ENST00000550841 SLIT3O75094 1523 aa29.29■■■□□ 2.28
NEK3-202ENST00000550841 KIF20BQ96Q89 1820 aa29.29■■■□□ 2.28
NEK3-202ENST00000550841 USP54Q70EL1 1684 aa29.28■■■□□ 2.28
NEK3-202ENST00000550841 ZC3H6P61129 1189 aaKnown RBP29.28■■■□□ 2.28
NEK3-202ENST00000550841 AMER1Q5JTC6 1135 aaPredicted RBP29.28■■■□□ 2.28
NEK3-202ENST00000550841 ABCA3Q99758 1704 aa29.26■■■□□ 2.27
NEK3-202ENST00000550841 CRYBG1Q9Y4K1 1723 aa29.26■■■□□ 2.27
NEK3-202ENST00000550841 PRDM11Q9NQV5 511 aa29.26■■■□□ 2.27
NEK3-202ENST00000550841 PHRF1Q9P1Y6 1649 aaKnown RBP29.26■■■□□ 2.27
NEK3-202ENST00000550841 SOX12O15370 315 aa29.25■■■□□ 2.27
NEK3-202ENST00000550841 CPDO75976 1380 aa29.25■■■□□ 2.27
NEK3-202ENST00000550841 NPC1L1Q9UHC9 1359 aa29.25■■■□□ 2.27
NEK3-202ENST00000550841 FAM83GA6ND36 823 aa29.23■■■□□ 2.27
NEK3-202ENST00000550841 MORC1Q86VD1 984 aa29.23■■■□□ 2.27
NEK3-202ENST00000550841 USP21Q9UK80 565 aa29.23■■■□□ 2.27
NEK3-202ENST00000550841 MARF1Q9Y4F3 1742 aaKnown RBP29.23■■■□□ 2.27
NEK3-202ENST00000550841 KIAA0232Q92628 1395 aa29.22■■■□□ 2.27
NEK3-202ENST00000550841 ARHGEF25Q86VW2 580 aa29.21■■■□□ 2.27
NEK3-202ENST00000550841 CC2D1BQ5T0F9 858 aaKnown RBP29.19■■■□□ 2.26
NEK3-202ENST00000550841 FNBP4Q8N3X1 1017 aaPredicted RBP29.19■■■□□ 2.26
NEK3-202ENST00000550841 TRPC5Q9UL62 973 aaPredicted RBP29.19■■■□□ 2.26
NEK3-202ENST00000550841 ZBTB7CA1YPR0 619 aa29.18■■■□□ 2.26
NEK3-202ENST00000550841 NFAT5O94916 1531 aa29.17■■■□□ 2.26
NEK3-202ENST00000550841 CHRNA2Q15822 529 aa29.16■■■□□ 2.26
NEK3-202ENST00000550841 RGS12O14924 1447 aa29.16■■■□□ 2.26
NEK3-202ENST00000550841 ANKRD26Q9UPS8 1709 aa29.16■■■□□ 2.26
NEK3-202ENST00000550841 AATKQ6ZMQ8 1374 aa29.15■■■□□ 2.26
NEK3-202ENST00000550841 COL14A1Q05707 1796 aaKnown RBP29.14■■■□□ 2.26
NEK3-202ENST00000550841 TNNT2P45379 298 aaPredicted RBP29.13■■■□□ 2.25
NEK3-202ENST00000550841 AMPHP49418 695 aa29.13■■■□□ 2.25
NEK3-202ENST00000550841 BTG4Q9NY30 223 aa29.13■■■□□ 2.25
NEK3-202ENST00000550841 FBLN1P23142 703 aa29.11■■■□□ 2.25
NEK3-202ENST00000550841 EVA1CP58658 441 aa29.11■■■□□ 2.25
NEK3-202ENST00000550841 CNGB1Q14028 1251 aaPredicted RBP29.11■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms