RNA–Protein interactions for RNA: ENST00000549139.5

CHMP1A-206, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 812 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-206ENST00000549139 FAM182BQ5T319 152 aa22.86■■□□□ 1.25
CHMP1A-206ENST00000549139 THSD7AQ9UPZ6 1657 aa22.86■■□□□ 1.25
CHMP1A-206ENST00000549139 TNS1Q9HBL0 1735 aaKnown RBP22.84■■□□□ 1.25
CHMP1A-206ENST00000549139 CRYBG1Q9Y4K1 1723 aa22.84■■□□□ 1.25
CHMP1A-206ENST00000549139 R3HDM1Q15032 1099 aaKnown RBP22.83■■□□□ 1.25
CHMP1A-206ENST00000549139 PRR36Q9H6K5 1346 aa22.82■■□□□ 1.24
CHMP1A-206ENST00000549139 STAC3Q96MF2 364 aa22.82■■□□□ 1.24
CHMP1A-206ENST00000549139 POGKQ9P215 609 aa22.82■■□□□ 1.24
CHMP1A-206ENST00000549139 ADGRB1O14514 1584 aa22.81■■□□□ 1.24
CHMP1A-206ENST00000549139 GPRASP1Q5JY77 1395 aa22.8■■□□□ 1.24
CHMP1A-206ENST00000549139 EZH2Q15910 746 aaKnown RBP22.78■■□□□ 1.24
CHMP1A-206ENST00000549139 CAMKK2Q96RR4 588 aa22.78■■□□□ 1.24
CHMP1A-206ENST00000549139 HIRIP3Q9BW71 556 aaPredicted RBP22.78■■□□□ 1.24
CHMP1A-206ENST00000549139 TULP4Q9NRJ4 1543 aa22.77■■□□□ 1.24
CHMP1A-206ENST00000549139 DCAF11Q8TEB1 546 aa22.77■■□□□ 1.24
CHMP1A-206ENST00000549139 SPATA31A1Q5TZJ5 1347 aa22.76■■□□□ 1.23
CHMP1A-206ENST00000549139 EIF3AQ14152 1382 aaKnown RBP22.75■■□□□ 1.23
CHMP1A-206ENST00000549139 WASLO00401 505 aaPredicted RBP22.74■■□□□ 1.23
CHMP1A-206ENST00000549139 PRDM11Q9NQV5 511 aa22.74■■□□□ 1.23
CHMP1A-206ENST00000549139 TRAK1Q9UPV9 953 aa22.74■■□□□ 1.23
CHMP1A-206ENST00000549139 KDM2AQ9Y2K7 1162 aa22.74■■□□□ 1.23
CHMP1A-206ENST00000549139 MINK1Q8N4C8 1332 aaPredicted RBP22.74■■□□□ 1.23
CHMP1A-206ENST00000549139 PCGF6Q9BYE7 350 aa22.73■■□□□ 1.23
CHMP1A-206ENST00000549139 TRIM37O94972 964 aa22.72■■□□□ 1.23
CHMP1A-206ENST00000549139 FAM196AQ6ZSG2 479 aa22.72■■□□□ 1.23
CHMP1A-206ENST00000549139 SIN3AQ96ST3 1273 aa22.72■■□□□ 1.23
CHMP1A-206ENST00000549139 NGDNQ8NEJ9 315 aaKnown RBP22.71■■□□□ 1.23
CHMP1A-206ENST00000549139 KIAA0232Q92628 1395 aa22.71■■□□□ 1.23
CHMP1A-206ENST00000549139 PARD3Q8TEW0 1356 aa22.7■■□□□ 1.22
CHMP1A-206ENST00000549139 PAK3O75914 559 aaPredicted RBP22.69■■□□□ 1.22
CHMP1A-206ENST00000549139 CHRNA2Q15822 529 aa22.68■■□□□ 1.22
CHMP1A-206ENST00000549139 RREB1Q92766 1687 aa22.68■■□□□ 1.22
CHMP1A-206ENST00000549139 APBA3O96018 575 aa22.67■■□□□ 1.22
CHMP1A-206ENST00000549139 PHRF1Q9P1Y6 1649 aaKnown RBP22.67■■□□□ 1.22
CHMP1A-206ENST00000549139 ATP7BP35670 1465 aa22.66■■□□□ 1.22
CHMP1A-206ENST00000549139 NEUROD1Q13562 356 aa22.66■■□□□ 1.22
CHMP1A-206ENST00000549139 STRN4Q9NRL3 753 aa22.65■■□□□ 1.22
CHMP1A-206ENST00000549139 NUP188Q5SRE5 1749 aa22.65■■□□□ 1.22
CHMP1A-206ENST00000549139 BARGINQ6ZT62 677 aa22.64■■□□□ 1.21
CHMP1A-206ENST00000549139 ITSN1Q15811 1721 aa22.63■■□□□ 1.21
CHMP1A-206ENST00000549139 ZC3H6P61129 1189 aaKnown RBP22.63■■□□□ 1.21
CHMP1A-206ENST00000549139 NUDT16Q96DE0 195 aaKnown RBP22.63■■□□□ 1.21
CHMP1A-206ENST00000549139 SSH2Q76I76 1423 aa22.63■■□□□ 1.21
CHMP1A-206ENST00000549139 L3MBTL2Q969R5 705 aa22.62■■□□□ 1.21
CHMP1A-206ENST00000549139 KIAA1210Q9ULL0 1709 aa22.62■■□□□ 1.21
CHMP1A-206ENST00000549139 ARHGEF28Q8N1W1 1705 aaKnown RBP22.6■■□□□ 1.21
CHMP1A-206ENST00000549139 USP35Q9P2H5 1018 aa22.6■■□□□ 1.21
CHMP1A-206ENST00000549139 CAMTA1Q9Y6Y1 1673 aa22.6■■□□□ 1.21
CHMP1A-206ENST00000549139 POLR3AO14802 1390 aaPredicted RBP22.6■■□□□ 1.21
CHMP1A-206ENST00000549139 NUTM2GQ5VZR2 741 aa22.59■■□□□ 1.21
CHMP1A-206ENST00000549139 YY1P25490 414 aa22.58■■□□□ 1.21
CHMP1A-206ENST00000549139 PDE3BQ13370 1112 aa22.58■■□□□ 1.21
CHMP1A-206ENST00000549139 LARP1Q6PKG0 1096 aaKnown RBP22.58■■□□□ 1.21
CHMP1A-206ENST00000549139 LMO7Q8WWI1 1683 aa22.58■■□□□ 1.2
CHMP1A-206ENST00000549139 NRKQ7Z2Y5 1582 aa22.57■■□□□ 1.2
CHMP1A-206ENST00000549139 TOPAZ1Q8N9V7 1692 aa22.56■■□□□ 1.2
CHMP1A-206ENST00000549139 CPDO75976 1380 aa22.56■■□□□ 1.2
CHMP1A-206ENST00000549139 EVA1CP58658 441 aa22.56■■□□□ 1.2
CHMP1A-206ENST00000549139 NBPF8Q3BBV2 869 aa22.56■■□□□ 1.2
CHMP1A-206ENST00000549139 NBPF14Q5TI25 921 aa22.56■■□□□ 1.2
CHMP1A-206ENST00000549139 TCP11L2Q8N4U5 519 aa22.56■■□□□ 1.2
CHMP1A-206ENST00000549139 CDK19Q9BWU1 502 aa22.55■■□□□ 1.2
CHMP1A-206ENST00000549139 ACEP12821 1306 aa22.55■■□□□ 1.2
CHMP1A-206ENST00000549139 USP19O94966 1318 aa22.54■■□□□ 1.2
CHMP1A-206ENST00000549139 PLEKHG3A1L390 1219 aa22.53■■□□□ 1.2
CHMP1A-206ENST00000549139 PARP4Q9UKK3 1724 aaKnown RBP22.52■■□□□ 1.2
CHMP1A-206ENST00000549139 SPON1Q9HCB6 807 aa22.52■■□□□ 1.2
CHMP1A-206ENST00000549139 THRAP3Q9Y2W1 955 aaKnown RBP22.52■■□□□ 1.2
CHMP1A-206ENST00000549139 CCDC61Q9Y6R9 512 aa22.52■■□□□ 1.2
CHMP1A-206ENST00000549139 KCNQ2O43526 872 aa22.51■■□□□ 1.19
CHMP1A-206ENST00000549139 CLSPNQ9HAW4 1339 aa22.5■■□□□ 1.19
CHMP1A-206ENST00000549139 TONSLQ96HA7 1378 aa22.5■■□□□ 1.19
CHMP1A-206ENST00000549139 PEAK1Q9H792 1746 aa22.49■■□□□ 1.19
CHMP1A-206ENST00000549139 ABTB2Q8N961 1025 aa22.49■■□□□ 1.19
CHMP1A-206ENST00000549139 NINLQ9Y2I6 1382 aa22.49■■□□□ 1.19
CHMP1A-206ENST00000549139 UTRNP46939 3433 aa22.48■■□□□ 1.19
CHMP1A-206ENST00000549139 COL5A2P05997 1499 aaPredicted RBP22.48■■□□□ 1.19
CHMP1A-206ENST00000549139 NBPF1Q3BBV0 1214 aa22.48■■□□□ 1.19
CHMP1A-206ENST00000549139 TRPM1Q7Z4N2 1603 aa22.47■■□□□ 1.19
CHMP1A-206ENST00000549139 GCP02774 474 aa22.47■■□□□ 1.19
CHMP1A-206ENST00000549139 RGPD3A6NKT7 1758 aaPredicted RBP22.47■■□□□ 1.19
CHMP1A-206ENST00000549139 RGPD4Q7Z3J3 1758 aa22.47■■□□□ 1.19
CHMP1A-206ENST00000549139 SBF2Q86WG5 1849 aa22.46■■□□□ 1.19
CHMP1A-206ENST00000549139 C11orf95C9JLR9 678 aaPredicted RBP22.46■■□□□ 1.19
CHMP1A-206ENST00000549139 PPP1R1BQ9UD71 204 aaPredicted RBP22.46■■□□□ 1.19
CHMP1A-206ENST00000549139 OVOS2A0A0G2JMS6 1433 aa22.44■■□□□ 1.18
CHMP1A-206ENST00000549139 OVOS2A0A0J9YW53 1432 aa22.44■■□□□ 1.18
CHMP1A-206ENST00000549139 PLSCR1O15162 318 aa22.44■■□□□ 1.18
CHMP1A-206ENST00000549139 OVOS2Q6IE36 1432 aa22.44■■□□□ 1.18
CHMP1A-206ENST00000549139 CRB1P82279 1406 aa22.43■■□□□ 1.18
CHMP1A-206ENST00000549139 NLRP13Q86W25 1043 aa22.43■■□□□ 1.18
CHMP1A-206ENST00000549139 ANO8Q9HCE9 1232 aaPredicted RBP22.43■■□□□ 1.18
CHMP1A-206ENST00000549139 CASZ1Q86V15 1759 aa22.43■■□□□ 1.18
CHMP1A-206ENST00000549139 LRRC37A3O60309 1634 aa22.41■■□□□ 1.18
CHMP1A-206ENST00000549139 PTF1AQ7RTS3 328 aa22.4■■□□□ 1.18
CHMP1A-206ENST00000549139 PROM2Q8N271 834 aa22.39■■□□□ 1.17
CHMP1A-206ENST00000549139 PDGFDQ9GZP0 370 aaPredicted RBP22.39■■□□□ 1.17
CHMP1A-206ENST00000549139 TIMELESSQ9UNS1 1208 aa22.39■■□□□ 1.17
CHMP1A-206ENST00000549139 PPIP5K1Q6PFW1 1433 aa22.39■■□□□ 1.17
CHMP1A-206ENST00000549139 AATKQ6ZMQ8 1374 aa22.38■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms