RNA–Protein interactions for RNA: ENST00000549139.5

CHMP1A-206, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 812 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-206ENST00000549139 NISCHQ9Y2I1 1504 aa39.26■■■■□ 3.88
CHMP1A-206ENST00000549139 ABCC9O60706 1549 aa35.87■■■■□ 3.33
CHMP1A-206ENST00000549139 CCDC180Q9P1Z9 1646 aa35.41■■■■□ 3.26
CHMP1A-206ENST00000549139 DNAJC5BQ9UF47 199 aa34.15■■■■□ 3.06
CHMP1A-206ENST00000549139 RB1CC1Q8TDY2 1594 aa33.92■■■■□ 3.02
CHMP1A-206ENST00000549139 NACADO15069 1562 aa33.6■■■□□ 2.97
CHMP1A-206ENST00000549139 PABPN1Q86U42 306 aaKnown RBP eCLIP33.32■■■□□ 2.92
CHMP1A-206ENST00000549139 DCAF8L2P0C7V8 631 aa33.23■■■□□ 2.91
CHMP1A-206ENST00000549139 UNC13AQ9UPW8 1703 aa33.19■■■□□ 2.9
CHMP1A-206ENST00000549139 MYO15BQ96JP2 1530 aa33.02■■■□□ 2.88
CHMP1A-206ENST00000549139 BICRAQ9NZM4 1560 aa33.02■■■□□ 2.88
CHMP1A-206ENST00000549139 SHROOM4Q9ULL8 1493 aa32.5■■■□□ 2.79
CHMP1A-206ENST00000549139 ZCCHC6Q5VYS8 1495 aaKnown RBP32.44■■■□□ 2.78
CHMP1A-206ENST00000549139 DCAF1Q9Y4B6 1507 aa32.42■■■□□ 2.78
CHMP1A-206ENST00000549139 CC2D2AQ9P2K1 1620 aa32.39■■■□□ 2.78
CHMP1A-206ENST00000549139 CECR2Q9BXF3 1484 aa32.36■■■□□ 2.77
CHMP1A-206ENST00000549139 EIF4G1Q04637 1599 aaKnown RBP32.21■■■□□ 2.75
CHMP1A-206ENST00000549139 SCRIBQ14160 1630 aa32.2■■■□□ 2.75
CHMP1A-206ENST00000549139 DNAJC5Q9H3Z4 198 aa31.67■■■□□ 2.66
CHMP1A-206ENST00000549139 CUX2O14529 1486 aa31.12■■■□□ 2.57
CHMP1A-206ENST00000549139 NCAPD3P42695 1498 aa31.07■■■□□ 2.56
CHMP1A-206ENST00000549139 ERCC6Q03468 1493 aa30.95■■■□□ 2.55
CHMP1A-206ENST00000549139 ATAD2BQ9ULI0 1458 aa30.89■■■□□ 2.54
CHMP1A-206ENST00000549139 HMGXB3Q12766 1538 aa30.76■■■□□ 2.51
CHMP1A-206ENST00000549139 SMARCA2P51531 1590 aa30.73■■■□□ 2.51
CHMP1A-206ENST00000549139 SMARCA4P51532 1647 aa30.71■■■□□ 2.51
CHMP1A-206ENST00000549139 NESP48681 1621 aa30.7■■■□□ 2.51
CHMP1A-206ENST00000549139 BAZ1BQ9UIG0 1483 aaKnown RBP30.5■■■□□ 2.47
CHMP1A-206ENST00000549139 THOC2Q8NI27 1593 aaKnown RBP30.49■■■□□ 2.47
CHMP1A-206ENST00000549139 BAZ1AQ9NRL2 1556 aaPredicted RBP30.48■■■□□ 2.47
CHMP1A-206ENST00000549139 PEG3Q9GZU2 1588 aa30.46■■■□□ 2.47
CHMP1A-206ENST00000549139 LAMC3Q9Y6N6 1575 aa30.38■■■□□ 2.45
CHMP1A-206ENST00000549139 KIF21AQ7Z4S6 1674 aa30.26■■■□□ 2.43
CHMP1A-206ENST00000549139 MROH2BQ7Z745 1585 aa30.25■■■□□ 2.43
CHMP1A-206ENST00000549139 PDS5BQ9NTI5 1447 aa30.22■■■□□ 2.43
CHMP1A-206ENST00000549139 CADPSQ9ULU8 1353 aa30.07■■■□□ 2.4
CHMP1A-206ENST00000549139 MRC2Q9UBG0 1479 aa29.99■■■□□ 2.39
CHMP1A-206ENST00000549139 TRIM41Q8WV44 630 aa29.99■■■□□ 2.39
CHMP1A-206ENST00000549139 WDR62O43379 1518 aa29.96■■■□□ 2.39
CHMP1A-206ENST00000549139 WIZO95785 1651 aa29.84■■■□□ 2.37
CHMP1A-206ENST00000549139 CEP164Q9UPV0 1460 aa29.76■■■□□ 2.35
CHMP1A-206ENST00000549139 FANCD2Q9BXW9 1451 aa29.71■■■□□ 2.35
CHMP1A-206ENST00000549139 CFTRP13569 1480 aa29.65■■■□□ 2.34
CHMP1A-206ENST00000549139 OSCARQ8IYS5 282 aa29.6■■■□□ 2.33
CHMP1A-206ENST00000549139 URB2Q14146 1524 aaKnown RBP29.52■■■□□ 2.32
CHMP1A-206ENST00000549139 RSF1Q96T23 1441 aaPredicted RBP29.45■■■□□ 2.31
CHMP1A-206ENST00000549139 TOP2AP11388 1531 aaKnown RBP29.43■■■□□ 2.3
CHMP1A-206ENST00000549139 RIMBP3CA6NJZ7 1639 aa29.27■■■□□ 2.28
CHMP1A-206ENST00000549139 RIMBP3BA6NNM3 1639 aa29.27■■■□□ 2.28
CHMP1A-206ENST00000549139 RIMBP3Q9UFD9 1639 aa29.27■■■□□ 2.28
CHMP1A-206ENST00000549139 PRDM2Q13029 1718 aa29.25■■■□□ 2.27
CHMP1A-206ENST00000549139 ZNF608Q9ULD9 1512 aaPredicted RBP29.24■■■□□ 2.27
CHMP1A-206ENST00000549139 IFT140Q96RY7 1462 aa29.21■■■□□ 2.27
CHMP1A-206ENST00000549139 ARHGEF11O15085 1522 aa29.15■■■□□ 2.26
CHMP1A-206ENST00000549139 CCDC88BA6NC98 1476 aa29.12■■■□□ 2.25
CHMP1A-206ENST00000549139 TOPBP1Q92547 1522 aa29.11■■■□□ 2.25
CHMP1A-206ENST00000549139 EIF4G3O43432 1585 aaKnown RBP29.01■■■□□ 2.24
CHMP1A-206ENST00000549139 ABCC8Q09428 1581 aa28.99■■■□□ 2.23
CHMP1A-206ENST00000549139 DNMBPQ6XZF7 1577 aa28.94■■■□□ 2.22
CHMP1A-206ENST00000549139 CYB5RLQ6IPT4 315 aa28.94■■■□□ 2.22
CHMP1A-206ENST00000549139 TARBP1Q13395 1621 aaKnown RBP28.91■■■□□ 2.22
CHMP1A-206ENST00000549139 AQRO60306 1485 aaKnown RBP eCLIP28.9■■■□□ 2.221e-6■■■■□ 25.4
CHMP1A-206ENST00000549139 CHD1O14646 1710 aa28.88■■■□□ 2.21
CHMP1A-206ENST00000549139 ARAP1Q96P48 1450 aa28.85■■■□□ 2.21
CHMP1A-206ENST00000549139 POLA1P09884 1462 aaPredicted RBP28.78■■■□□ 2.2
CHMP1A-206ENST00000549139 FBLN2P98095 1184 aa28.72■■■□□ 2.19
CHMP1A-206ENST00000549139 TRHP20396 242 aaPredicted RBP28.7■■■□□ 2.18
CHMP1A-206ENST00000549139 RAD54L2Q9Y4B4 1467 aa28.68■■■□□ 2.18
CHMP1A-206ENST00000549139 TDRD9Q8NDG6 1382 aaKnown RBP28.64■■■□□ 2.18
CHMP1A-206ENST00000549139 SOGA1O94964 1423 aa28.62■■■□□ 2.17
CHMP1A-206ENST00000549139 CLASP1Q7Z460 1538 aa28.59■■■□□ 2.17
CHMP1A-206ENST00000549139 SNAPC4Q5SXM2 1469 aa28.57■■■□□ 2.16
CHMP1A-206ENST00000549139 WDR97A6NE52 1622 aa28.55■■■□□ 2.16
CHMP1A-206ENST00000549139 FGD5Q6ZNL6 1462 aa28.52■■■□□ 2.16
CHMP1A-206ENST00000549139 MAGI1Q96QZ7 1491 aaPredicted RBP28.47■■■□□ 2.15
CHMP1A-206ENST00000549139 SYNJ1O43426 1573 aa28.46■■■□□ 2.15
CHMP1A-206ENST00000549139 CHMP7Q8WUX9 453 aaPredicted RBP28.46■■■□□ 2.15
CHMP1A-206ENST00000549139 CUX1P39880 1505 aa28.44■■■□□ 2.14
CHMP1A-206ENST00000549139 GRIN2BQ13224 1484 aa28.43■■■□□ 2.14
CHMP1A-206ENST00000549139 SYNJ2O15056 1496 aa28.4■■■□□ 2.14
CHMP1A-206ENST00000549139 GAPVD1Q14C86 1478 aa28.28■■■□□ 2.12
CHMP1A-206ENST00000549139 PBRM1Q86U86 1689 aa28.26■■■□□ 2.12
CHMP1A-206ENST00000549139 SUPT5HO00267 1087 aaKnown RBP28.2■■■□□ 2.1
CHMP1A-206ENST00000549139 ABCA10Q8WWZ4 1543 aa28.19■■■□□ 2.1
CHMP1A-206ENST00000549139 ABCA5Q8WWZ7 1642 aa28.19■■■□□ 2.1
CHMP1A-206ENST00000549139 AEBP2Q6ZN18 517 aaPredicted RBP28.19■■■□□ 2.1
CHMP1A-206ENST00000549139 ERCC6L2Q5T890 1561 aa28.11■■■□□ 2.09
CHMP1A-206ENST00000549139 GRIN2AQ12879 1464 aa28.08■■■□□ 2.09
CHMP1A-206ENST00000549139 NUP160Q12769 1436 aa28.03■■■□□ 2.08
CHMP1A-206ENST00000549139 CEP170Q5SW79 1584 aa28■■■□□ 2.07
CHMP1A-206ENST00000549139 ADAMTS12P58397 1594 aa27.99■■■□□ 2.07
CHMP1A-206ENST00000549139 WRNQ14191 1432 aaPredicted RBP eCLIP27.95■■■□□ 2.07
CHMP1A-206ENST00000549139 SHROOM2Q13796 1616 aa27.95■■■□□ 2.06
CHMP1A-206ENST00000549139 FHAD1B1AJZ9 1412 aa27.9■■■□□ 2.06
CHMP1A-206ENST00000549139 TOP2BQ02880 1626 aa27.85■■■□□ 2.05
CHMP1A-206ENST00000549139 BIVM-ERCC5R4GMW8 1640 aa27.85■■■□□ 2.05
CHMP1A-206ENST00000549139 KIF13AQ9H1H9 1805 aa27.83■■■□□ 2.05
CHMP1A-206ENST00000549139 ERICH3Q5RHP9 1530 aa27.81■■■□□ 2.04
CHMP1A-206ENST00000549139 PRG4Q92954 1404 aaPredicted RBP27.75■■■□□ 2.03
CHMP1A-206ENST00000549139 JPH4Q96JJ6 628 aa27.71■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms