RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 EN1Q05925 392 aaPredicted RBP19.1■□□□□ 0.65
USP28-212ENST00000544750 ACIN1Q9UKV3 1341 aaKnown RBP19.09■□□□□ 0.65
USP28-212ENST00000544750 POGKQ9P215 609 aa19.09■□□□□ 0.65
USP28-212ENST00000544750 A0A0G2JS52 829 aa19.08■□□□□ 0.64
USP28-212ENST00000544750 MYT1Q01538 1121 aa19.08■□□□□ 0.64
USP28-212ENST00000544750 FAM182BQ5T319 152 aa19.08■□□□□ 0.64
USP28-212ENST00000544750 ITSN1Q15811 1721 aa19.08■□□□□ 0.64
USP28-212ENST00000544750 GPRASP1Q5JY77 1395 aa19.07■□□□□ 0.64
USP28-212ENST00000544750 PHRF1Q9P1Y6 1649 aaKnown RBP19.07■□□□□ 0.64
USP28-212ENST00000544750 HIRIP3Q9BW71 556 aaPredicted RBP19.06■□□□□ 0.64
USP28-212ENST00000544750 EIF3AQ14152 1382 aaKnown RBP19.06■□□□□ 0.64
USP28-212ENST00000544750 ARHGEF28Q8N1W1 1705 aaKnown RBP19.05■□□□□ 0.64
USP28-212ENST00000544750 RREB1Q92766 1687 aa19.05■□□□□ 0.64
USP28-212ENST00000544750 WASLO00401 505 aaPredicted RBP19.04■□□□□ 0.64
USP28-212ENST00000544750 TRAK1Q9UPV9 953 aa19.04■□□□□ 0.64
USP28-212ENST00000544750 MINK1Q8N4C8 1332 aaPredicted RBP19.03■□□□□ 0.64
USP28-212ENST00000544750 R3HDM1Q15032 1099 aaKnown RBP19.03■□□□□ 0.64
USP28-212ENST00000544750 SPATA31A1Q5TZJ5 1347 aa19.02■□□□□ 0.64
USP28-212ENST00000544750 EZH2Q15910 746 aaKnown RBP19.02■□□□□ 0.64
USP28-212ENST00000544750 CAMKK2Q96RR4 588 aa19.02■□□□□ 0.64
USP28-212ENST00000544750 ATP7BP35670 1465 aa19.02■□□□□ 0.63
USP28-212ENST00000544750 PRDM11Q9NQV5 511 aa19.01■□□□□ 0.63
USP28-212ENST00000544750 NUP188Q5SRE5 1749 aa19■□□□□ 0.63
USP28-212ENST00000544750 KIAA0232Q92628 1395 aa19■□□□□ 0.63
USP28-212ENST00000544750 TOPAZ1Q8N9V7 1692 aa19■□□□□ 0.63
USP28-212ENST00000544750 NGDNQ8NEJ9 315 aaKnown RBP18.99■□□□□ 0.63
USP28-212ENST00000544750 PARD3Q8TEW0 1356 aa18.97■□□□□ 0.63
USP28-212ENST00000544750 PAK3O75914 559 aaPredicted RBP18.97■□□□□ 0.63
USP28-212ENST00000544750 FAM196AQ6ZSG2 479 aa18.97■□□□□ 0.63
USP28-212ENST00000544750 LMO7Q8WWI1 1683 aa18.97■□□□□ 0.63
USP28-212ENST00000544750 TRIM37O94972 964 aa18.96■□□□□ 0.63
USP28-212ENST00000544750 CHRNA2Q15822 529 aa18.96■□□□□ 0.63
USP28-212ENST00000544750 NRKQ7Z2Y5 1582 aa18.96■□□□□ 0.63
USP28-212ENST00000544750 NUDT16Q96DE0 195 aaKnown RBP18.94■□□□□ 0.62
USP28-212ENST00000544750 CAMTA1Q9Y6Y1 1673 aa18.94■□□□□ 0.62
USP28-212ENST00000544750 POLR3AO14802 1390 aaPredicted RBP18.93■□□□□ 0.62
USP28-212ENST00000544750 RAB3GAP2Q9H2M9 1393 aa18.93■□□□□ 0.62
USP28-212ENST00000544750 SSH2Q76I76 1423 aa18.93■□□□□ 0.62
USP28-212ENST00000544750 BARGINQ6ZT62 677 aa18.93■□□□□ 0.62
USP28-212ENST00000544750 PARP4Q9UKK3 1724 aaKnown RBP18.92■□□□□ 0.62
USP28-212ENST00000544750 DCAF11Q8TEB1 546 aa18.92■□□□□ 0.62
USP28-212ENST00000544750 STAC3Q96MF2 364 aa18.92■□□□□ 0.62
USP28-212ENST00000544750 STRN4Q9NRL3 753 aa18.92■□□□□ 0.62
USP28-212ENST00000544750 KDM2AQ9Y2K7 1162 aa18.92■□□□□ 0.62
USP28-212ENST00000544750 SBF2Q86WG5 1849 aa18.91■□□□□ 0.62
USP28-212ENST00000544750 APBA3O96018 575 aa18.91■□□□□ 0.62
USP28-212ENST00000544750 ZC3H6P61129 1189 aaKnown RBP18.91■□□□□ 0.62
USP28-212ENST00000544750 PEAK1Q9H792 1746 aa18.89■□□□□ 0.61
USP28-212ENST00000544750 CPDO75976 1380 aa18.89■□□□□ 0.61
USP28-212ENST00000544750 KIAA1210Q9ULL0 1709 aa18.88■□□□□ 0.61
USP28-212ENST00000544750 NBPF8Q3BBV2 869 aa18.88■□□□□ 0.61
USP28-212ENST00000544750 NUTM2GQ5VZR2 741 aa18.88■□□□□ 0.61
USP28-212ENST00000544750 CDK19Q9BWU1 502 aa18.88■□□□□ 0.61
USP28-212ENST00000544750 ACEP12821 1306 aa18.88■□□□□ 0.61
USP28-212ENST00000544750 RGPD3A6NKT7 1758 aaPredicted RBP18.88■□□□□ 0.61
USP28-212ENST00000544750 RGPD4Q7Z3J3 1758 aa18.88■□□□□ 0.61
USP28-212ENST00000544750 PLEKHG3A1L390 1219 aa18.87■□□□□ 0.61
USP28-212ENST00000544750 USP19O94966 1318 aa18.87■□□□□ 0.61
USP28-212ENST00000544750 LARP1Q6PKG0 1096 aaKnown RBP18.87■□□□□ 0.61
USP28-212ENST00000544750 USP35Q9P2H5 1018 aa18.87■□□□□ 0.61
USP28-212ENST00000544750 PDE3BQ13370 1112 aa18.86■□□□□ 0.61
USP28-212ENST00000544750 TCP11L2Q8N4U5 519 aa18.85■□□□□ 0.61
USP28-212ENST00000544750 CCDC61Q9Y6R9 512 aa18.85■□□□□ 0.61
USP28-212ENST00000544750 EVA1CP58658 441 aa18.84■□□□□ 0.61
USP28-212ENST00000544750 COL5A2P05997 1499 aaPredicted RBP18.84■□□□□ 0.61
USP28-212ENST00000544750 THRAP3Q9Y2W1 955 aaKnown RBP18.83■□□□□ 0.6
USP28-212ENST00000544750 WNK3Q9BYP7 1800 aa18.82■□□□□ 0.6
USP28-212ENST00000544750 NBPF14Q5TI25 921 aa18.82■□□□□ 0.6
USP28-212ENST00000544750 ABTB2Q8N961 1025 aa18.82■□□□□ 0.6
USP28-212ENST00000544750 CASZ1Q86V15 1759 aa18.82■□□□□ 0.6
USP28-212ENST00000544750 LRRC37A3O60309 1634 aa18.82■□□□□ 0.6
USP28-212ENST00000544750 COL18A1P39060 1754 aa18.81■□□□□ 0.6
USP28-212ENST00000544750 GCP02774 474 aa18.79■□□□□ 0.6
USP28-212ENST00000544750 YY1P25490 414 aa18.79■□□□□ 0.6
USP28-212ENST00000544750 CRB1P82279 1406 aa18.78■□□□□ 0.6
USP28-212ENST00000544750 KCNQ2O43526 872 aa18.78■□□□□ 0.6
USP28-212ENST00000544750 SPON1Q9HCB6 807 aa18.78■□□□□ 0.6
USP28-212ENST00000544750 SLIT3O75094 1523 aa18.78■□□□□ 0.6
USP28-212ENST00000544750 OVOS2A0A0G2JMS6 1433 aa18.77■□□□□ 0.6
USP28-212ENST00000544750 OVOS2A0A0J9YW53 1432 aa18.77■□□□□ 0.6
USP28-212ENST00000544750 OVOS2Q6IE36 1432 aa18.77■□□□□ 0.6
USP28-212ENST00000544750 C11orf95C9JLR9 678 aaPredicted RBP18.77■□□□□ 0.6
USP28-212ENST00000544750 NLRP13Q86W25 1043 aa18.77■□□□□ 0.6
USP28-212ENST00000544750 BRD4O60885 1362 aaPredicted RBP18.77■□□□□ 0.6
USP28-212ENST00000544750 NINLQ9Y2I6 1382 aa18.77■□□□□ 0.6
USP28-212ENST00000544750 PPIP5K1Q6PFW1 1433 aa18.76■□□□□ 0.59
USP28-212ENST00000544750 AKAP12Q02952 1782 aa18.76■□□□□ 0.59
USP28-212ENST00000544750 RGPD5Q99666 1765 aa18.76■□□□□ 0.59
USP28-212ENST00000544750 PLSCR1O15162 318 aa18.76■□□□□ 0.59
USP28-212ENST00000544750 PIK3C2AO00443 1686 aa18.75■□□□□ 0.59
USP28-212ENST00000544750 QRICH2Q9H0J4 1663 aa18.74■□□□□ 0.59
USP28-212ENST00000544750 AATKQ6ZMQ8 1374 aa18.74■□□□□ 0.59
USP28-212ENST00000544750 NBPF1Q3BBV0 1214 aa18.74■□□□□ 0.59
USP28-212ENST00000544750 ANO8Q9HCE9 1232 aaPredicted RBP18.73■□□□□ 0.59
USP28-212ENST00000544750 USP6P35125 1406 aa18.73■□□□□ 0.59
USP28-212ENST00000544750 BCL9O00512 1426 aa18.72■□□□□ 0.59
USP28-212ENST00000544750 PTF1AQ7RTS3 328 aa18.71■□□□□ 0.59
USP28-212ENST00000544750 PPP1R1BQ9UD71 204 aaPredicted RBP18.71■□□□□ 0.59
USP28-212ENST00000544750 PROM2Q8N271 834 aa18.7■□□□□ 0.58
USP28-212ENST00000544750 CABP2Q9NPB3 220 aa18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 192.1 ms