RNA–Protein interactions for RNA: ENST00000540975.5

YBX3-210, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-210ENST00000540975 RC3H1Q5TC82 1133 aaKnown RBP13.27□□□□□ -0.29
YBX3-210ENST00000540975 ARMC2Q8NEN0 867 aa13.27□□□□□ -0.29
YBX3-210ENST00000540975 SNRKQ9NRH2 765 aa13.27□□□□□ -0.29
YBX3-210ENST00000540975 WNT7AO00755 349 aa13.26□□□□□ -0.29
YBX3-210ENST00000540975 ZNF511Q8NB15 262 aa13.26□□□□□ -0.29
YBX3-210ENST00000540975 PDZRN3Q9UPQ7 1066 aa13.26□□□□□ -0.29
YBX3-210ENST00000540975 IRX2Q9BZI1 471 aaPredicted RBP13.25□□□□□ -0.29
YBX3-210ENST00000540975 TNFRSF10AO00220 468 aa13.24□□□□□ -0.29
YBX3-210ENST00000540975 GFRA3O60609 400 aa13.24□□□□□ -0.29
YBX3-210ENST00000540975 PRR20EP86478 221 aa13.24□□□□□ -0.29
YBX3-210ENST00000540975 PRR20CP86479 221 aa13.24□□□□□ -0.29
YBX3-210ENST00000540975 PRR20DP86480 221 aa13.24□□□□□ -0.29
YBX3-210ENST00000540975 PRR20BP86481 221 aa13.24□□□□□ -0.29
YBX3-210ENST00000540975 PRR20AP86496 221 aa13.24□□□□□ -0.29
YBX3-210ENST00000540975 TRIM34Q9BYJ4 488 aa13.24□□□□□ -0.29
YBX3-210ENST00000540975 GJD4Q96KN9 370 aaPredicted RBP13.23□□□□□ -0.29
YBX3-210ENST00000540975 FKBPLQ9UIM3 349 aa13.23□□□□□ -0.29
YBX3-210ENST00000540975 MTMR14Q8NCE2 650 aa13.21□□□□□ -0.29
YBX3-210ENST00000540975 FOXJ1Q92949 421 aa13.21□□□□□ -0.29
YBX3-210ENST00000540975 MRGPRX2Q96LB1 330 aa13.21□□□□□ -0.29
YBX3-210ENST00000540975 SOCS7O14512 581 aa13.2□□□□□ -0.3
YBX3-210ENST00000540975 GPKOWQ92917 476 aaPredicted RBP eCLIP13.2□□□□□ -0.3
YBX3-210ENST00000540975 NBPF14Q5TI25 921 aa13.19□□□□□ -0.3
YBX3-210ENST00000540975 EHBP1Q8NDI1 1231 aa13.19□□□□□ -0.3
YBX3-210ENST00000540975 LAPTM4AQ15012 233 aa13.18□□□□□ -0.3
YBX3-210ENST00000540975 PDXDC2PQ6P474 469 aa13.18□□□□□ -0.3
YBX3-210ENST00000540975 NRG2O14511 850 aaPredicted RBP13.17□□□□□ -0.3
YBX3-210ENST00000540975 SIAH2O43255 324 aa13.17□□□□□ -0.3
YBX3-210ENST00000540975 VARSP26640 1264 aaKnown RBP13.17□□□□□ -0.3
YBX3-210ENST00000540975 BPHLQ86WA6 291 aaPredicted RBP13.17□□□□□ -0.3
YBX3-210ENST00000540975 PNMA1Q8ND90 353 aa13.17□□□□□ -0.3
YBX3-210ENST00000540975 TOR4AQ9NXH8 423 aa13.17□□□□□ -0.3
YBX3-210ENST00000540975 ZC3H4Q9UPT8 1303 aaKnown RBP13.16□□□□□ -0.3
YBX3-210ENST00000540975 AGERQ15109 404 aa13.16□□□□□ -0.3
YBX3-210ENST00000540975 C4orf48Q5BLP8 95 aa13.16□□□□□ -0.3
YBX3-210ENST00000540975 SH3BP5LQ7L8J4 393 aa13.16□□□□□ -0.3
YBX3-210ENST00000540975 CYP4X1Q8N118 509 aa13.16□□□□□ -0.3
YBX3-210ENST00000540975 SH3RF1Q7Z6J0 888 aa13.15□□□□□ -0.3
YBX3-210ENST00000540975 SNIP1Q8TAD8 396 aaKnown RBP13.15□□□□□ -0.3
YBX3-210ENST00000540975 TTC24A2A3L6 582 aaPredicted RBP13.13□□□□□ -0.31
YBX3-210ENST00000540975 APBB1O00213 710 aa13.12□□□□□ -0.31
YBX3-210ENST00000540975 PTK2Q05397 1052 aa13.11□□□□□ -0.31
YBX3-210ENST00000540975 MCM6Q14566 821 aa13.11□□□□□ -0.31
YBX3-210ENST00000540975 FAM174AQ8TBP5 190 aa13.11□□□□□ -0.31
YBX3-210ENST00000540975 OCSTAMPQ9BR26 566 aa13.1□□□□□ -0.31
YBX3-210ENST00000540975 ARHGAP9Q9BRR9 750 aa13.1□□□□□ -0.31
YBX3-210ENST00000540975 GPSM3Q9Y4H4 160 aa13.1□□□□□ -0.31
YBX3-210ENST00000540975 NDUFB9Q9Y6M9 179 aa13.1□□□□□ -0.31
YBX3-210ENST00000540975 MAGEB6P1A0A0J9YX57 407 aa13.09□□□□□ -0.31
YBX3-210ENST00000540975 MPNDQ8N594 471 aa13.09□□□□□ -0.31
YBX3-210ENST00000540975 J3QL48 77 aa13.08□□□□□ -0.32
YBX3-210ENST00000540975 GPR37L1O60883 481 aa13.07□□□□□ -0.32
YBX3-210ENST00000540975 ALDH1A1P00352 501 aa13.07□□□□□ -0.32
YBX3-210ENST00000540975 SMPD1P17405 629 aa13.07□□□□□ -0.32
YBX3-210ENST00000540975 FLIIQ13045 1269 aa13.07□□□□□ -0.32
YBX3-210ENST00000540975 C1QTNF2Q9BXJ5 285 aa13.07□□□□□ -0.32
YBX3-210ENST00000540975 CARD14Q9BXL6 1004 aa13.07□□□□□ -0.32
YBX3-210ENST00000540975 PRM3Q9NNZ6 103 aa13.07□□□□□ -0.32
YBX3-210ENST00000540975 FAM187AA6NFU0 413 aa13.06□□□□□ -0.32
YBX3-210ENST00000540975 DGAT1O75907 488 aa13.06□□□□□ -0.32
YBX3-210ENST00000540975 ZBTB33Q86T24 672 aa13.06□□□□□ -0.32
YBX3-210ENST00000540975 TBC1D2BQ9UPU7 963 aa13.06□□□□□ -0.32
YBX3-210ENST00000540975 ERFEQ4G0M1 354 aa13.05□□□□□ -0.32
YBX3-210ENST00000540975 CDK15Q96Q40 435 aa13.05□□□□□ -0.32
YBX3-210ENST00000540975 PKDCCQ504Y2 493 aa13.04□□□□□ -0.32
YBX3-210ENST00000540975 TLL2Q9Y6L7 1015 aa13.04□□□□□ -0.32
YBX3-210ENST00000540975 ARID5BQ14865 1188 aa13.03□□□□□ -0.32
YBX3-210ENST00000540975 Q6ZNB5 142 aa13.03□□□□□ -0.32
YBX3-210ENST00000540975 TRMT44Q8IYL2 757 aaKnown RBP13.03□□□□□ -0.32
YBX3-210ENST00000540975 ADAM32Q8TC27 787 aa13.03□□□□□ -0.32
YBX3-210ENST00000540975 GDPD2Q9HCC8 539 aa13.03□□□□□ -0.32
YBX3-210ENST00000540975 ZBBXA8MT70 800 aa13.02□□□□□ -0.33
YBX3-210ENST00000540975 FBXO45P0C2W1 286 aa13.01□□□□□ -0.33
YBX3-210ENST00000540975 WASF2Q9Y6W5 498 aa13.01□□□□□ -0.33
YBX3-210ENST00000540975 GRM5P41594 1212 aa13□□□□□ -0.33
YBX3-210ENST00000540975 COG6Q9Y2V7 657 aa12.99□□□□□ -0.33
YBX3-210ENST00000540975 AVPP01185 164 aa12.98□□□□□ -0.33
YBX3-210ENST00000540975 NR1H3Q13133 447 aa12.98□□□□□ -0.33
YBX3-210ENST00000540975 IRF5Q13568 498 aa12.98□□□□□ -0.33
YBX3-210ENST00000540975 HPS1Q92902 700 aa12.98□□□□□ -0.33
YBX3-210ENST00000540975 ADH1CP00326 375 aa12.97□□□□□ -0.33
YBX3-210ENST00000540975 ABL2P42684 1182 aa12.97□□□□□ -0.33
YBX3-210ENST00000540975 VASH1Q7L8A9 365 aaPredicted RBP12.97□□□□□ -0.33
YBX3-210ENST00000540975 MAP4K5Q9Y4K4 846 aa12.97□□□□□ -0.33
YBX3-210ENST00000540975 MYT1Q01538 1121 aa12.96□□□□□ -0.33
YBX3-210ENST00000540975 TRAF7Q6Q0C0 670 aa12.96□□□□□ -0.33
YBX3-210ENST00000540975 UBTFP17480 764 aaKnown RBP12.95□□□□□ -0.34
YBX3-210ENST00000540975 DZIP3Q86Y13 1208 aaKnown RBP12.95□□□□□ -0.34
YBX3-210ENST00000540975 SLC10A4Q96EP9 437 aa12.95□□□□□ -0.34
YBX3-210ENST00000540975 POM121Q96HA1 1249 aa12.95□□□□□ -0.34
YBX3-210ENST00000540975 CDV3Q9UKY7 258 aaKnown RBP12.95□□□□□ -0.34
YBX3-210ENST00000540975 LCE2BO14633 110 aa12.94□□□□□ -0.34
YBX3-210ENST00000540975 NR5A1Q13285 461 aa12.94□□□□□ -0.34
YBX3-210ENST00000540975 RAD21O60216 631 aa12.93□□□□□ -0.34
YBX3-210ENST00000540975 NNTQ13423 1086 aa12.93□□□□□ -0.34
YBX3-210ENST00000540975 KCTD15Q96SI1 283 aaPredicted RBP12.93□□□□□ -0.34
YBX3-210ENST00000540975 GTF3C3Q9Y5Q9 886 aa12.92□□□□□ -0.34
YBX3-210ENST00000540975 NR3C2P08235 984 aa12.91□□□□□ -0.34
YBX3-210ENST00000540975 ZNF330Q9Y3S2 320 aaPredicted RBP12.91□□□□□ -0.34
YBX3-210ENST00000540975 PCDHB9Q9Y5E1 797 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms