RNA–Protein interactions for RNA: ENST00000539332.2

DDB1-213, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 2

Gene DDB1, Length 1,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-213ENST00000539332 CC2D1BQ5T0F9 858 aaKnown RBP11.92□□□□□ -0.5
DDB1-213ENST00000539332 C19orf44Q9H6X5 657 aa11.92□□□□□ -0.5
DDB1-213ENST00000539332 A0A1W2PP64 1363 aa11.92□□□□□ -0.5
DDB1-213ENST00000539332 TERF2IPQ9NYB0 399 aa11.92□□□□□ -0.5
DDB1-213ENST00000539332 NRKQ7Z2Y5 1582 aa11.91□□□□□ -0.5
DDB1-213ENST00000539332 SHPRHQ149N8 1683 aa11.9□□□□□ -0.5
DDB1-213ENST00000539332 DCCP43146 1447 aa11.9□□□□□ -0.5
DDB1-213ENST00000539332 CPSF1Q10570 1443 aaKnown RBP11.9□□□□□ -0.51
DDB1-213ENST00000539332 BLMP54132 1417 aaPredicted RBP11.89□□□□□ -0.51
DDB1-213ENST00000539332 PLEKHG3A1L390 1219 aa11.89□□□□□ -0.51
DDB1-213ENST00000539332 PPP2R1AP30153 589 aa11.89□□□□□ -0.51
DDB1-213ENST00000539332 HDGFL2Q7Z4V5 671 aaPredicted RBP11.89□□□□□ -0.51
DDB1-213ENST00000539332 MSH6P52701 1360 aa11.88□□□□□ -0.51
DDB1-213ENST00000539332 ZBED9Q6R2W3 1325 aa11.88□□□□□ -0.51
DDB1-213ENST00000539332 ZBTB22O15209 634 aa11.88□□□□□ -0.51
DDB1-213ENST00000539332 CNGB1Q14028 1251 aaPredicted RBP11.88□□□□□ -0.51
DDB1-213ENST00000539332 FAM9BQ8IZU0 186 aa11.88□□□□□ -0.51
DDB1-213ENST00000539332 LTBP4Q8N2S1 1624 aa11.88□□□□□ -0.51
DDB1-213ENST00000539332 ACEP12821 1306 aa11.87□□□□□ -0.51
DDB1-213ENST00000539332 CGNL1Q0VF96 1302 aa11.87□□□□□ -0.51
DDB1-213ENST00000539332 ATF3P18847 181 aa11.87□□□□□ -0.51
DDB1-213ENST00000539332 HNRNPUQ00839 825 aaKnown RBP eCLIP11.87□□□□□ -0.51
DDB1-213ENST00000539332 POLR3AO14802 1390 aaPredicted RBP11.86□□□□□ -0.51
DDB1-213ENST00000539332 CADPS2Q86UW7 1296 aa11.86□□□□□ -0.51
DDB1-213ENST00000539332 PMFBP1Q8TBY8 1022 aa11.86□□□□□ -0.51
DDB1-213ENST00000539332 ZNF692Q9BU19 519 aaPredicted RBP11.86□□□□□ -0.51
DDB1-213ENST00000539332 BCL11AQ9H165 835 aa11.86□□□□□ -0.51
DDB1-213ENST00000539332 MST1RQ04912 1400 aa11.86□□□□□ -0.51
DDB1-213ENST00000539332 C1orf167Q5SNV9 1468 aa11.85□□□□□ -0.51
DDB1-213ENST00000539332 EDC4Q6P2E9 1401 aaKnown RBP11.85□□□□□ -0.51
DDB1-213ENST00000539332 USP6P35125 1406 aa11.84□□□□□ -0.51
DDB1-213ENST00000539332 ESCO1Q5FWF5 840 aa11.84□□□□□ -0.51
DDB1-213ENST00000539332 NGDNQ8NEJ9 315 aaKnown RBP11.84□□□□□ -0.51
DDB1-213ENST00000539332 PHF8Q9UPP1 1060 aa11.84□□□□□ -0.51
DDB1-213ENST00000539332 MAP2P11137 1827 aaKnown RBP11.84□□□□□ -0.51
DDB1-213ENST00000539332 ORAI2Q96SN7 254 aa11.84□□□□□ -0.51
DDB1-213ENST00000539332 KIF1AQ12756 1690 aa11.84□□□□□ -0.51
DDB1-213ENST00000539332 USP54Q70EL1 1684 aa11.84□□□□□ -0.51
DDB1-213ENST00000539332 NEFLP07196 543 aa11.83□□□□□ -0.52
DDB1-213ENST00000539332 SSH2Q76I76 1423 aa11.83□□□□□ -0.52
DDB1-213ENST00000539332 FYB1O15117 783 aa11.82□□□□□ -0.52
DDB1-213ENST00000539332 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.82□□□□□ -0.52
DDB1-213ENST00000539332 TTC21BQ7Z4L5 1316 aa11.81□□□□□ -0.52
DDB1-213ENST00000539332 COL3A1P02461 1466 aaPredicted RBP11.8□□□□□ -0.52
DDB1-213ENST00000539332 MORC1Q86VD1 984 aa11.8□□□□□ -0.52
DDB1-213ENST00000539332 FOXO3O43524 673 aa11.79□□□□□ -0.52
DDB1-213ENST00000539332 ADRA2BP18089 450 aa11.79□□□□□ -0.52
DDB1-213ENST00000539332 NME9Q86XW9 330 aa11.79□□□□□ -0.52
DDB1-213ENST00000539332 GGNBP2Q9H3C7 697 aa11.79□□□□□ -0.52
DDB1-213ENST00000539332 SLAIN2Q9P270 581 aa11.79□□□□□ -0.52
DDB1-213ENST00000539332 MARF1Q9Y4F3 1742 aaKnown RBP11.79□□□□□ -0.52
DDB1-213ENST00000539332 PIK3C2AO00443 1686 aa11.79□□□□□ -0.52
DDB1-213ENST00000539332 TTC21AQ8NDW8 1320 aa11.79□□□□□ -0.52
DDB1-213ENST00000539332 SMG6Q86US8 1419 aaKnown RBP11.78□□□□□ -0.52
DDB1-213ENST00000539332 PSME1Q06323 249 aa11.78□□□□□ -0.52
DDB1-213ENST00000539332 TRPM3Q9HCF6 1732 aaPredicted RBP11.78□□□□□ -0.52
DDB1-213ENST00000539332 TNNT2P45379 298 aaPredicted RBP11.77□□□□□ -0.53
DDB1-213ENST00000539332 BRINP3Q76B58 766 aa11.77□□□□□ -0.53
DDB1-213ENST00000539332 ZRANB1Q9UGI0 708 aa11.77□□□□□ -0.53
DDB1-213ENST00000539332 XPCQ01831 940 aaPredicted RBP11.76□□□□□ -0.53
DDB1-213ENST00000539332 ADAMTS8Q9UP79 889 aa11.76□□□□□ -0.53
DDB1-213ENST00000539332 OVOS2A0A0J9YW53 1432 aa11.76□□□□□ -0.53
DDB1-213ENST00000539332 OVOS2Q6IE36 1432 aa11.76□□□□□ -0.53
DDB1-213ENST00000539332 PAK3O75914 559 aaPredicted RBP11.75□□□□□ -0.53
DDB1-213ENST00000539332 COG3Q96JB2 828 aa11.75□□□□□ -0.53
DDB1-213ENST00000539332 NPHP3Q7Z494 1330 aa11.75□□□□□ -0.53
DDB1-213ENST00000539332 AATKQ6ZMQ8 1374 aa11.75□□□□□ -0.53
DDB1-213ENST00000539332 PNPLA6Q8IY17 1366 aa11.75□□□□□ -0.53
DDB1-213ENST00000539332 IQSEC2Q5JU85 1478 aa11.75□□□□□ -0.53
DDB1-213ENST00000539332 EIF5BO60841 1220 aaKnown RBP11.74□□□□□ -0.53
DDB1-213ENST00000539332 WDR43Q15061 677 aaKnown RBP eCLIP11.74□□□□□ -0.53
DDB1-213ENST00000539332 TMEM132AQ24JP5 1023 aa11.74□□□□□ -0.53
DDB1-213ENST00000539332 KRT28Q7Z3Y7 464 aa11.74□□□□□ -0.53
DDB1-213ENST00000539332 VSIG10Q8N0Z9 540 aa11.74□□□□□ -0.53
DDB1-213ENST00000539332 USP31Q70CQ4 1352 aa11.74□□□□□ -0.53
DDB1-213ENST00000539332 PXDNQ92626 1479 aa11.74□□□□□ -0.53
DDB1-213ENST00000539332 CDK12Q9NYV4 1490 aaPredicted RBP11.74□□□□□ -0.53
DDB1-213ENST00000539332 ALS2Q96Q42 1657 aa11.74□□□□□ -0.53
DDB1-213ENST00000539332 FKBP8Q14318 412 aa11.74□□□□□ -0.53
DDB1-213ENST00000539332 ABTB2Q8N961 1025 aa11.74□□□□□ -0.53
DDB1-213ENST00000539332 DDX17Q92841 729 aaKnown RBP11.74□□□□□ -0.53
DDB1-213ENST00000539332 NHSL1Q5SYE7 1610 aa11.73□□□□□ -0.53
DDB1-213ENST00000539332 ROBO1Q9Y6N7 1651 aa11.73□□□□□ -0.53
DDB1-213ENST00000539332 MTHFSP49914 203 aa11.73□□□□□ -0.53
DDB1-213ENST00000539332 NLRP6P59044 892 aa11.72□□□□□ -0.53
DDB1-213ENST00000539332 RBM19Q9Y4C8 960 aaKnown RBP11.72□□□□□ -0.53
DDB1-213ENST00000539332 PDE3BQ13370 1112 aa11.72□□□□□ -0.53
DDB1-213ENST00000539332 NUTM2GQ5VZR2 741 aa11.72□□□□□ -0.53
DDB1-213ENST00000539332 CFAP53Q96M91 514 aa11.72□□□□□ -0.53
DDB1-213ENST00000539332 SBNO1A3KN83 1393 aa11.71□□□□□ -0.53
DDB1-213ENST00000539332 ZNF521Q96K83 1311 aa11.71□□□□□ -0.54
DDB1-213ENST00000539332 FBLN1P23142 703 aa11.71□□□□□ -0.54
DDB1-213ENST00000539332 PEAK1Q9H792 1746 aa11.71□□□□□ -0.54
DDB1-213ENST00000539332 NPM2Q86SE8 214 aaKnown RBP11.7□□□□□ -0.54
DDB1-213ENST00000539332 NGEFQ8N5V2 710 aa11.7□□□□□ -0.54
DDB1-213ENST00000539332 NUDCQ9Y266 331 aa11.7□□□□□ -0.54
DDB1-213ENST00000539332 SOS2Q07890 1332 aaPredicted RBP11.7□□□□□ -0.54
DDB1-213ENST00000539332 FANCIQ9NVI1 1328 aa11.7□□□□□ -0.54
DDB1-213ENST00000539332 POLKQ9UBT6 870 aa11.69□□□□□ -0.54
DDB1-213ENST00000539332 RGPD1P0DJD0 1748 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms