RNA–Protein interactions for RNA: ENST00000538838.5

TMEM260-202, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best) BASIC

Gene TMEM260, Length 1,638 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-202ENST00000538838 PER1O15534 1290 aaPredicted RBP32.28■■■□□ 2.76
TMEM260-202ENST00000538838 PIK3C2AO00443 1686 aa32.27■■■□□ 2.76
TMEM260-202ENST00000538838 KRT28Q7Z3Y7 464 aa32.26■■■□□ 2.76
TMEM260-202ENST00000538838 ALS2Q96Q42 1657 aa32.26■■■□□ 2.75
TMEM260-202ENST00000538838 SUGP2Q8IX01 1082 aaKnown RBP eCLIP32.26■■■□□ 2.75
TMEM260-202ENST00000538838 KNSTRNQ9Y448 316 aa32.25■■■□□ 2.75
TMEM260-202ENST00000538838 TTC21BQ7Z4L5 1316 aa32.25■■■□□ 2.75
TMEM260-202ENST00000538838 ANKRD26Q9UPS8 1709 aa32.24■■■□□ 2.75
TMEM260-202ENST00000538838 BRD4O60885 1362 aaPredicted RBP32.22■■■□□ 2.75
TMEM260-202ENST00000538838 COL16A1Q07092 1604 aaPredicted RBP32.22■■■□□ 2.75
TMEM260-202ENST00000538838 PAK3O75914 559 aaPredicted RBP32.22■■■□□ 2.75
TMEM260-202ENST00000538838 SOS2Q07890 1332 aaPredicted RBP32.21■■■□□ 2.75
TMEM260-202ENST00000538838 MARF1Q9Y4F3 1742 aaKnown RBP32.2■■■□□ 2.74
TMEM260-202ENST00000538838 CGNL1Q0VF96 1302 aa32.19■■■□□ 2.74
TMEM260-202ENST00000538838 TTC21AQ8NDW8 1320 aa32.19■■■□□ 2.74
TMEM260-202ENST00000538838 SBNO1A3KN83 1393 aa32.19■■■□□ 2.74
TMEM260-202ENST00000538838 AMER1Q5JTC6 1135 aaPredicted RBP32.18■■■□□ 2.74
TMEM260-202ENST00000538838 TNS3Q68CZ2 1445 aa32.18■■■□□ 2.74
TMEM260-202ENST00000538838 NME9Q86XW9 330 aa32.18■■■□□ 2.74
TMEM260-202ENST00000538838 USP54Q70EL1 1684 aa32.17■■■□□ 2.74
TMEM260-202ENST00000538838 CNGB1Q14028 1251 aaPredicted RBP32.15■■■□□ 2.74
TMEM260-202ENST00000538838 FYB1O15117 783 aa32.14■■■□□ 2.74
TMEM260-202ENST00000538838 CC2D1BQ5T0F9 858 aaKnown RBP32.13■■■□□ 2.73
TMEM260-202ENST00000538838 GGNBP2Q9H3C7 697 aa32.13■■■□□ 2.73
TMEM260-202ENST00000538838 ZRANB1Q9UGI0 708 aa32.13■■■□□ 2.73
TMEM260-202ENST00000538838 SPATA31A3Q5VYP0 1347 aa32.13■■■□□ 2.73
TMEM260-202ENST00000538838 DIEXFQ68CQ4 756 aaKnown RBP32.12■■■□□ 2.73
TMEM260-202ENST00000538838 NSD2O96028 1365 aa32.12■■■□□ 2.73
TMEM260-202ENST00000538838 NPC1L1Q9UHC9 1359 aa32.12■■■□□ 2.73
TMEM260-202ENST00000538838 ABTB2Q8N961 1025 aa32.11■■■□□ 2.73
TMEM260-202ENST00000538838 LMOD2Q6P5Q4 547 aa32.11■■■□□ 2.73
TMEM260-202ENST00000538838 OVOS2A0A0J9YW53 1432 aa32.1■■■□□ 2.73
TMEM260-202ENST00000538838 OVOS2Q6IE36 1432 aa32.1■■■□□ 2.73
TMEM260-202ENST00000538838 NUTM2GQ5VZR2 741 aa32.1■■■□□ 2.73
TMEM260-202ENST00000538838 CRYBG1Q9Y4K1 1723 aa32.09■■■□□ 2.73
TMEM260-202ENST00000538838 USP31Q70CQ4 1352 aa32.07■■■□□ 2.72
TMEM260-202ENST00000538838 PHRF1Q9P1Y6 1649 aaKnown RBP32.07■■■□□ 2.72
TMEM260-202ENST00000538838 ABCA3Q99758 1704 aa32.06■■■□□ 2.72
TMEM260-202ENST00000538838 ARHGEF10O15013 1369 aa32.06■■■□□ 2.72
TMEM260-202ENST00000538838 MED1Q15648 1581 aaPredicted RBP32.06■■■□□ 2.72
TMEM260-202ENST00000538838 NLRP6P59044 892 aa32.05■■■□□ 2.72
TMEM260-202ENST00000538838 COL22A1Q8NFW1 1626 aaPredicted RBP32.04■■■□□ 2.72
TMEM260-202ENST00000538838 LRRC59Q96AG4 307 aaKnown RBP32.04■■■□□ 2.72
TMEM260-202ENST00000538838 COG3Q96JB2 828 aa32.04■■■□□ 2.72
TMEM260-202ENST00000538838 SHPRHQ149N8 1683 aa32.02■■■□□ 2.72
TMEM260-202ENST00000538838 SLIT3O75094 1523 aa32.01■■■□□ 2.72
TMEM260-202ENST00000538838 PLEKHG5O94827 1062 aa32.01■■■□□ 2.72
TMEM260-202ENST00000538838 PARD3Q8TEW0 1356 aa32.01■■■□□ 2.71
TMEM260-202ENST00000538838 HSPA1LP34931 641 aa32■■■□□ 2.71
TMEM260-202ENST00000538838 MORC1Q86VD1 984 aa32■■■□□ 2.71
TMEM260-202ENST00000538838 NLRP13Q86W25 1043 aa32■■■□□ 2.71
TMEM260-202ENST00000538838 PNPLA6Q8IY17 1366 aa31.99■■■□□ 2.71
TMEM260-202ENST00000538838 USP19O94966 1318 aa31.98■■■□□ 2.71
TMEM260-202ENST00000538838 ANP32CO43423 234 aa31.97■■■□□ 2.71
TMEM260-202ENST00000538838 PRKRIP1Q9H875 184 aaPredicted RBP31.97■■■□□ 2.71
TMEM260-202ENST00000538838 NFAT5O94916 1531 aa31.96■■■□□ 2.71
TMEM260-202ENST00000538838 TNNT2P45379 298 aaPredicted RBP31.96■■■□□ 2.71
TMEM260-202ENST00000538838 FBXO41Q8TF61 875 aa31.96■■■□□ 2.71
TMEM260-202ENST00000538838 MAP2P11137 1827 aaKnown RBP31.95■■■□□ 2.7
TMEM260-202ENST00000538838 SOX12O15370 315 aa31.93■■■□□ 2.7
TMEM260-202ENST00000538838 CABLES1Q8TDN4 633 aa31.93■■■□□ 2.7
TMEM260-202ENST00000538838 LTN1O94822 1766 aa31.93■■■□□ 2.7
TMEM260-202ENST00000538838 RALBP1Q15311 655 aa31.91■■■□□ 2.7
TMEM260-202ENST00000538838 FBLN1P23142 703 aa31.9■■■□□ 2.7
TMEM260-202ENST00000538838 JCADQ9P266 1359 aa31.9■■■□□ 2.7
TMEM260-202ENST00000538838 GCP02774 474 aa31.87■■■□□ 2.69
TMEM260-202ENST00000538838 AATKQ6ZMQ8 1374 aa31.86■■■□□ 2.69
TMEM260-202ENST00000538838 KCNH5Q8NCM2 988 aa31.86■■■□□ 2.69
TMEM260-202ENST00000538838 PEAK1Q9H792 1746 aa31.85■■■□□ 2.69
TMEM260-202ENST00000538838 PPP2R1AP30153 589 aa31.84■■■□□ 2.69
TMEM260-202ENST00000538838 MYBBP1AQ9BQG0 1328 aaKnown RBP31.84■■■□□ 2.69
TMEM260-202ENST00000538838 RRS1Q15050 365 aaKnown RBP31.83■■■□□ 2.69
TMEM260-202ENST00000538838 HAP1P54257 671 aaPredicted RBP31.82■■■□□ 2.69
TMEM260-202ENST00000538838 SMG6Q86US8 1419 aaKnown RBP31.81■■■□□ 2.68
TMEM260-202ENST00000538838 MAP3K19Q56UN5 1328 aa31.79■■■□□ 2.68
TMEM260-202ENST00000538838 MIER1Q8N108 512 aa31.79■■■□□ 2.68
TMEM260-202ENST00000538838 EMILIN1Q9Y6C2 1016 aa31.79■■■□□ 2.68
TMEM260-202ENST00000538838 ZC3H6P61129 1189 aaKnown RBP31.78■■■□□ 2.68
TMEM260-202ENST00000538838 POLKQ9UBT6 870 aa31.78■■■□□ 2.68
TMEM260-202ENST00000538838 KIAA0232Q92628 1395 aa31.76■■■□□ 2.68
TMEM260-202ENST00000538838 ZBTB7CA1YPR0 619 aa31.76■■■□□ 2.67
TMEM260-202ENST00000538838 COL18A1P39060 1754 aa31.76■■■□□ 2.67
TMEM260-202ENST00000538838 RGPD5Q99666 1765 aa31.76■■■□□ 2.67
TMEM260-202ENST00000538838 NUTM2BA6NNL0 878 aaPredicted RBP31.75■■■□□ 2.67
TMEM260-202ENST00000538838 NUTM2EB1AL46 878 aaPredicted RBP31.75■■■□□ 2.67
TMEM260-202ENST00000538838 NUTM2AQ8IVF1 878 aaPredicted RBP31.75■■■□□ 2.67
TMEM260-202ENST00000538838 CPDO75976 1380 aa31.75■■■□□ 2.67
TMEM260-202ENST00000538838 CDK12Q9NYV4 1490 aaPredicted RBP31.75■■■□□ 2.67
TMEM260-202ENST00000538838 LRP6O75581 1613 aa31.75■■■□□ 2.67
TMEM260-202ENST00000538838 MTHFSP49914 203 aa31.75■■■□□ 2.67
TMEM260-202ENST00000538838 ARHGEF25Q86VW2 580 aa31.75■■■□□ 2.67
TMEM260-202ENST00000538838 SPATA31A6Q5VVP1 1343 aa31.74■■■□□ 2.67
TMEM260-202ENST00000538838 PPM1GO15355 546 aaPredicted RBP31.74■■■□□ 2.67
TMEM260-202ENST00000538838 LMO7Q8WWI1 1683 aa31.72■■■□□ 2.67
TMEM260-202ENST00000538838 COL14A1Q05707 1796 aaKnown RBP31.71■■■□□ 2.67
TMEM260-202ENST00000538838 RTL1A6NKG5 1358 aa31.71■■■□□ 2.67
TMEM260-202ENST00000538838 ABCC6O95255 1503 aa31.7■■■□□ 2.67
TMEM260-202ENST00000538838 PLCH1Q4KWH8 1693 aa31.7■■■□□ 2.67
TMEM260-202ENST00000538838 FLT4P35916 1363 aa31.7■■■□□ 2.67
TMEM260-202ENST00000538838 AMPHP49418 695 aa31.69■■■□□ 2.66
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms