RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 ATRNO75882 1429 aa21.08■□□□□ 0.97
USP28-204ENST00000537642 PAK3O75914 559 aaPredicted RBP21.08■□□□□ 0.97
USP28-204ENST00000537642 TRPC5Q9UL62 973 aaPredicted RBP21.08■□□□□ 0.97
USP28-204ENST00000537642 EVC2Q86UK5 1308 aa21.07■□□□□ 0.96
USP28-204ENST00000537642 SLIT2O94813 1529 aa21.07■□□□□ 0.96
USP28-204ENST00000537642 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.07■□□□□ 0.96
USP28-204ENST00000537642 CRYBG1Q9Y4K1 1723 aa21.07■□□□□ 0.96
USP28-204ENST00000537642 RGS12O14924 1447 aa21.04■□□□□ 0.96
USP28-204ENST00000537642 PLCH1Q4KWH8 1693 aa21.03■□□□□ 0.96
USP28-204ENST00000537642 CABP1Q9NZU7 370 aa21.03■□□□□ 0.96
USP28-204ENST00000537642 SBNO2Q9Y2G9 1366 aa21.02■□□□□ 0.96
USP28-204ENST00000537642 UNC5CLQ8IV45 518 aa21.02■□□□□ 0.96
USP28-204ENST00000537642 NWD2Q9ULI1 1742 aa21.01■□□□□ 0.95
USP28-204ENST00000537642 FAM83GA6ND36 823 aa21.01■□□□□ 0.95
USP28-204ENST00000537642 CLSPNQ9HAW4 1339 aa21■□□□□ 0.95
USP28-204ENST00000537642 PHRF1Q9P1Y6 1649 aaKnown RBP21■□□□□ 0.95
USP28-204ENST00000537642 NUTM2GQ5VZR2 741 aa20.99■□□□□ 0.95
USP28-204ENST00000537642 GJD4Q96KN9 370 aaPredicted RBP20.98■□□□□ 0.95
USP28-204ENST00000537642 COL14A1Q05707 1796 aaKnown RBP20.97■□□□□ 0.95
USP28-204ENST00000537642 USP6P35125 1406 aa20.97■□□□□ 0.95
USP28-204ENST00000537642 ABTB2Q8N961 1025 aa20.97■□□□□ 0.95
USP28-204ENST00000537642 GLI3P10071 1580 aa20.97■□□□□ 0.95
USP28-204ENST00000537642 BRD4O60885 1362 aaPredicted RBP20.97■□□□□ 0.95
USP28-204ENST00000537642 ATAD2Q6PL18 1390 aa20.97■□□□□ 0.95
USP28-204ENST00000537642 NRAPQ86VF7 1730 aa20.96■□□□□ 0.95
USP28-204ENST00000537642 AKAP12Q02952 1782 aa20.95■□□□□ 0.94
USP28-204ENST00000537642 SSH2Q76I76 1423 aa20.95■□□□□ 0.94
USP28-204ENST00000537642 VPS72Q15906 364 aa20.94■□□□□ 0.94
USP28-204ENST00000537642 UPF1Q92900 1129 aaKnown RBP eCLIP20.93■□□□□ 0.94
USP28-204ENST00000537642 BTG4Q9NY30 223 aa20.93■□□□□ 0.94
USP28-204ENST00000537642 TIMELESSQ9UNS1 1208 aa20.93■□□□□ 0.94
USP28-204ENST00000537642 USP19O94966 1318 aa20.93■□□□□ 0.94
USP28-204ENST00000537642 KIAA0232Q92628 1395 aa20.93■□□□□ 0.94
USP28-204ENST00000537642 NRKQ7Z2Y5 1582 aa20.93■□□□□ 0.94
USP28-204ENST00000537642 ST20-MTHFSA0A0A6YYL1 179 aa20.92■□□□□ 0.94
USP28-204ENST00000537642 TESK2Q96S53 571 aa20.92■□□□□ 0.94
USP28-204ENST00000537642 PRDM11Q9NQV5 511 aa20.92■□□□□ 0.94
USP28-204ENST00000537642 ZC3H6P61129 1189 aaKnown RBP20.91■□□□□ 0.94
USP28-204ENST00000537642 CPSF1Q10570 1443 aaKnown RBP20.91■□□□□ 0.94
USP28-204ENST00000537642 NLRP13Q86W25 1043 aa20.91■□□□□ 0.94
USP28-204ENST00000537642 ZNF692Q9BU19 519 aaPredicted RBP20.91■□□□□ 0.94
USP28-204ENST00000537642 PIK3C2AO00443 1686 aa20.9■□□□□ 0.94
USP28-204ENST00000537642 CHRNA2Q15822 529 aa20.89■□□□□ 0.93
USP28-204ENST00000537642 CCDC9Q9Y3X0 531 aaKnown RBP20.89■□□□□ 0.93
USP28-204ENST00000537642 TTC21BQ7Z4L5 1316 aa20.88■□□□□ 0.93
USP28-204ENST00000537642 MON2Q7Z3U7 1717 aa20.88■□□□□ 0.93
USP28-204ENST00000537642 CCER1Q8TC90 406 aaPredicted RBP20.88■□□□□ 0.93
USP28-204ENST00000537642 USP47Q96K76 1375 aa20.87■□□□□ 0.93
USP28-204ENST00000537642 NLRP6P59044 892 aa20.87■□□□□ 0.93
USP28-204ENST00000537642 CD163L1Q9NR16 1453 aa20.87■□□□□ 0.93
USP28-204ENST00000537642 KTN1Q86UP2 1357 aaKnown RBP20.86■□□□□ 0.93
USP28-204ENST00000537642 GCP02774 474 aa20.86■□□□□ 0.93
USP28-204ENST00000537642 PUS7Q96PZ0 661 aaKnown RBP20.86■□□□□ 0.93
USP28-204ENST00000537642 SLIT3O75094 1523 aa20.86■□□□□ 0.93
USP28-204ENST00000537642 CPDO75976 1380 aa20.85■□□□□ 0.93
USP28-204ENST00000537642 BRWD3Q6RI45 1802 aa20.85■□□□□ 0.93
USP28-204ENST00000537642 TMC1Q8TDI8 760 aa20.85■□□□□ 0.93
USP28-204ENST00000537642 TTC21AQ8NDW8 1320 aa20.84■□□□□ 0.93
USP28-204ENST00000537642 ONECUT3O60422 494 aaPredicted RBP20.84■□□□□ 0.93
USP28-204ENST00000537642 SLC12A5Q9H2X9 1139 aa20.84■□□□□ 0.93
USP28-204ENST00000537642 LMO7Q8WWI1 1683 aa20.83■□□□□ 0.93
USP28-204ENST00000537642 SEPT12Q8IYM1 358 aa20.83■□□□□ 0.93
USP28-204ENST00000537642 SPATA31A5Q5VU36 1347 aa20.82■□□□□ 0.92
USP28-204ENST00000537642 SPATA31A7Q8IWB4 1347 aa20.82■□□□□ 0.92
USP28-204ENST00000537642 SLC24A1O60721 1099 aa20.82■□□□□ 0.92
USP28-204ENST00000537642 CAMTA1Q9Y6Y1 1673 aa20.82■□□□□ 0.92
USP28-204ENST00000537642 EP400Q96L91 3159 aa20.8■□□□□ 0.92
USP28-204ENST00000537642 FAM98CQ17RN3 349 aaKnown RBP20.8■□□□□ 0.92
USP28-204ENST00000537642 HDGFL2Q7Z4V5 671 aaPredicted RBP20.8■□□□□ 0.92
USP28-204ENST00000537642 STRN4Q9NRL3 753 aa20.8■□□□□ 0.92
USP28-204ENST00000537642 A0A1W2PP64 1363 aa20.79■□□□□ 0.92
USP28-204ENST00000537642 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.78■□□□□ 0.92
USP28-204ENST00000537642 SPATA31A1Q5TZJ5 1347 aa20.78■□□□□ 0.92
USP28-204ENST00000537642 NINLQ9Y2I6 1382 aa20.77■□□□□ 0.92
USP28-204ENST00000537642 TMF1P82094 1093 aa20.77■□□□□ 0.92
USP28-204ENST00000537642 TERF2IPQ9NYB0 399 aa20.77■□□□□ 0.92
USP28-204ENST00000537642 ZRANB1Q9UGI0 708 aa20.77■□□□□ 0.92
USP28-204ENST00000537642 EDC4Q6P2E9 1401 aaKnown RBP20.77■□□□□ 0.91
USP28-204ENST00000537642 COL18A1P39060 1754 aa20.77■□□□□ 0.91
USP28-204ENST00000537642 USP54Q70EL1 1684 aa20.77■□□□□ 0.91
USP28-204ENST00000537642 USP31Q70CQ4 1352 aa20.76■□□□□ 0.91
USP28-204ENST00000537642 ZBTB7CA1YPR0 619 aa20.76■□□□□ 0.91
USP28-204ENST00000537642 EVA1CP58658 441 aa20.76■□□□□ 0.91
USP28-204ENST00000537642 THSD7AQ9UPZ6 1657 aa20.76■□□□□ 0.91
USP28-204ENST00000537642 AATKQ6ZMQ8 1374 aa20.75■□□□□ 0.91
USP28-204ENST00000537642 A0A0G2JS52 829 aa20.75■□□□□ 0.91
USP28-204ENST00000537642 MYT1Q01538 1121 aa20.75■□□□□ 0.91
USP28-204ENST00000537642 LARP1Q6PKG0 1096 aaKnown RBP20.75■□□□□ 0.91
USP28-204ENST00000537642 NME9Q86XW9 330 aa20.75■□□□□ 0.91
USP28-204ENST00000537642 KCNH5Q8NCM2 988 aa20.75■□□□□ 0.91
USP28-204ENST00000537642 COL5A2P05997 1499 aaPredicted RBP20.75■□□□□ 0.91
USP28-204ENST00000537642 NFAT5O94916 1531 aa20.74■□□□□ 0.91
USP28-204ENST00000537642 KRT27Q7Z3Y8 459 aa20.74■□□□□ 0.91
USP28-204ENST00000537642 SOX12O15370 315 aa20.73■□□□□ 0.91
USP28-204ENST00000537642 ARHGEF25Q86VW2 580 aa20.73■□□□□ 0.91
USP28-204ENST00000537642 USP35Q9P2H5 1018 aa20.71■□□□□ 0.91
USP28-204ENST00000537642 AXIN2Q9Y2T1 843 aa20.71■□□□□ 0.91
USP28-204ENST00000537642 RGPD5Q99666 1765 aa20.71■□□□□ 0.91
USP28-204ENST00000537642 ANKRD36BQ8N2N9 1353 aa20.7■□□□□ 0.9
USP28-204ENST00000537642 OVOS2A0A0J9YW53 1432 aa20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms