RNA–Protein interactions for RNA: ENST00000537634.1

CHD4-207, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2

Gene CHD4, Length 691 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-207ENST00000537634 SEPT12Q8IYM1 358 aa14.02□□□□□ -0.17
CHD4-207ENST00000537634 CDK19Q9BWU1 502 aa14.02□□□□□ -0.17
CHD4-207ENST00000537634 BLMP54132 1417 aaPredicted RBP14.01□□□□□ -0.17
CHD4-207ENST00000537634 A0A0G2JS52 829 aa14.01□□□□□ -0.17
CHD4-207ENST00000537634 MYT1Q01538 1121 aa14.01□□□□□ -0.17
CHD4-207ENST00000537634 BTG4Q9NY30 223 aa14.01□□□□□ -0.17
CHD4-207ENST00000537634 PHRF1Q9P1Y6 1649 aaKnown RBP14.01□□□□□ -0.17
CHD4-207ENST00000537634 PRDM11Q9NQV5 511 aa14□□□□□ -0.17
CHD4-207ENST00000537634 NBPF1Q3BBV0 1214 aa13.99□□□□□ -0.17
CHD4-207ENST00000537634 ZRANB1Q9UGI0 708 aa13.99□□□□□ -0.17
CHD4-207ENST00000537634 CCDC61Q9Y6R9 512 aa13.99□□□□□ -0.17
CHD4-207ENST00000537634 POLR3AO14802 1390 aaPredicted RBP13.98□□□□□ -0.17
CHD4-207ENST00000537634 QRICH2Q9H0J4 1663 aa13.98□□□□□ -0.17
CHD4-207ENST00000537634 ONECUT3O60422 494 aaPredicted RBP13.98□□□□□ -0.17
CHD4-207ENST00000537634 SF3B2Q13435 895 aaKnown RBP13.98□□□□□ -0.17
CHD4-207ENST00000537634 KRT27Q7Z3Y8 459 aa13.98□□□□□ -0.17
CHD4-207ENST00000537634 ACEP12821 1306 aa13.97□□□□□ -0.17
CHD4-207ENST00000537634 CENPJQ9HC77 1338 aaPredicted RBP13.97□□□□□ -0.17
CHD4-207ENST00000537634 EP400Q96L91 3159 aa13.97□□□□□ -0.17
CHD4-207ENST00000537634 FAM98CQ17RN3 349 aaKnown RBP13.97□□□□□ -0.17
CHD4-207ENST00000537634 SRPK2P78362 688 aaKnown RBP13.96□□□□□ -0.17
CHD4-207ENST00000537634 KIAA0232Q92628 1395 aa13.96□□□□□ -0.18
CHD4-207ENST00000537634 PLEKHG3A1L390 1219 aa13.95□□□□□ -0.18
CHD4-207ENST00000537634 NBPF8Q3BBV2 869 aa13.95□□□□□ -0.18
CHD4-207ENST00000537634 NUTM2GQ5VZR2 741 aa13.95□□□□□ -0.18
CHD4-207ENST00000537634 PPIP5K1Q6PFW1 1433 aa13.95□□□□□ -0.18
CHD4-207ENST00000537634 SPATA31A5Q5VU36 1347 aa13.94□□□□□ -0.18
CHD4-207ENST00000537634 SPATA31A7Q8IWB4 1347 aa13.94□□□□□ -0.18
CHD4-207ENST00000537634 TRPM1Q7Z4N2 1603 aa13.94□□□□□ -0.18
CHD4-207ENST00000537634 NRKQ7Z2Y5 1582 aa13.94□□□□□ -0.18
CHD4-207ENST00000537634 L3MBTL2Q969R5 705 aa13.94□□□□□ -0.18
CHD4-207ENST00000537634 THSD7AQ9UPZ6 1657 aa13.94□□□□□ -0.18
CHD4-207ENST00000537634 ZC3H6P61129 1189 aaKnown RBP13.93□□□□□ -0.18
CHD4-207ENST00000537634 CHRNA2Q15822 529 aa13.93□□□□□ -0.18
CHD4-207ENST00000537634 DEFB132Q7Z7B7 95 aa13.93□□□□□ -0.18
CHD4-207ENST00000537634 ABTB2Q8N961 1025 aa13.93□□□□□ -0.18
CHD4-207ENST00000537634 CABP2Q9NPB3 220 aa13.92□□□□□ -0.18
CHD4-207ENST00000537634 RGPD1P0DJD0 1748 aa13.91□□□□□ -0.18
CHD4-207ENST00000537634 SIN3AQ96ST3 1273 aa13.91□□□□□ -0.18
CHD4-207ENST00000537634 STRN4Q9NRL3 753 aa13.91□□□□□ -0.18
CHD4-207ENST00000537634 BAG6P46379 1132 aa13.9□□□□□ -0.18
CHD4-207ENST00000537634 NEUROD1Q13562 356 aa13.9□□□□□ -0.18
CHD4-207ENST00000537634 BRD4O60885 1362 aaPredicted RBP13.9□□□□□ -0.18
CHD4-207ENST00000537634 ROCK2O75116 1388 aaKnown RBP13.9□□□□□ -0.18
CHD4-207ENST00000537634 USP19O94966 1318 aa13.9□□□□□ -0.19
CHD4-207ENST00000537634 SPATA31A1Q5TZJ5 1347 aa13.9□□□□□ -0.19
CHD4-207ENST00000537634 LMO7Q8WWI1 1683 aa13.89□□□□□ -0.19
CHD4-207ENST00000537634 CPDO75976 1380 aa13.89□□□□□ -0.19
CHD4-207ENST00000537634 NLRP13Q86W25 1043 aa13.89□□□□□ -0.19
CHD4-207ENST00000537634 USP6P35125 1406 aa13.89□□□□□ -0.19
CHD4-207ENST00000537634 SSH2Q76I76 1423 aa13.89□□□□□ -0.19
CHD4-207ENST00000537634 EVC2Q86UK5 1308 aa13.89□□□□□ -0.19
CHD4-207ENST00000537634 EVA1CP58658 441 aa13.88□□□□□ -0.19
CHD4-207ENST00000537634 FAM182BQ5T319 152 aa13.87□□□□□ -0.19
CHD4-207ENST00000537634 CABP1Q9NZU7 370 aa13.87□□□□□ -0.19
CHD4-207ENST00000537634 USP35Q9P2H5 1018 aa13.87□□□□□ -0.19
CHD4-207ENST00000537634 CAMTA1Q9Y6Y1 1673 aa13.87□□□□□ -0.19
CHD4-207ENST00000537634 TNS1Q9HBL0 1735 aaKnown RBP13.87□□□□□ -0.19
CHD4-207ENST00000537634 PIK3C2AO00443 1686 aa13.85□□□□□ -0.19
CHD4-207ENST00000537634 GCP02774 474 aa13.85□□□□□ -0.19
CHD4-207ENST00000537634 SLIT3O75094 1523 aa13.85□□□□□ -0.19
CHD4-207ENST00000537634 AKAP12Q02952 1782 aa13.84□□□□□ -0.19
CHD4-207ENST00000537634 NLRP6P59044 892 aa13.84□□□□□ -0.19
CHD4-207ENST00000537634 LARP1Q6PKG0 1096 aaKnown RBP13.84□□□□□ -0.19
CHD4-207ENST00000537634 BARGINQ6ZT62 677 aa13.84□□□□□ -0.19
CHD4-207ENST00000537634 COL5A2P05997 1499 aaPredicted RBP13.84□□□□□ -0.19
CHD4-207ENST00000537634 DISP2A7MBM2 1401 aa13.83□□□□□ -0.2
CHD4-207ENST00000537634 ZBTB7CA1YPR0 619 aa13.83□□□□□ -0.2
CHD4-207ENST00000537634 FAM196AQ6ZSG2 479 aa13.83□□□□□ -0.2
CHD4-207ENST00000537634 TCP11L2Q8N4U5 519 aa13.83□□□□□ -0.2
CHD4-207ENST00000537634 EN1Q05925 392 aaPredicted RBP13.82□□□□□ -0.2
CHD4-207ENST00000537634 PDE3BQ13370 1112 aa13.82□□□□□ -0.2
CHD4-207ENST00000537634 PARP4Q9UKK3 1724 aaKnown RBP13.81□□□□□ -0.2
CHD4-207ENST00000537634 THRAP3Q9Y2W1 955 aaKnown RBP13.81□□□□□ -0.2
CHD4-207ENST00000537634 LRP5O75197 1615 aa13.81□□□□□ -0.2
CHD4-207ENST00000537634 CRB1P82279 1406 aa13.81□□□□□ -0.2
CHD4-207ENST00000537634 TRIM37O94972 964 aa13.8□□□□□ -0.2
CHD4-207ENST00000537634 ZNF692Q9BU19 519 aaPredicted RBP13.8□□□□□ -0.2
CHD4-207ENST00000537634 AATKQ6ZMQ8 1374 aa13.8□□□□□ -0.2
CHD4-207ENST00000537634 TONSLQ96HA7 1378 aa13.8□□□□□ -0.2
CHD4-207ENST00000537634 PSDA5PKW4 1024 aaPredicted RBP13.79□□□□□ -0.2
CHD4-207ENST00000537634 TTC21BQ7Z4L5 1316 aa13.79□□□□□ -0.2
CHD4-207ENST00000537634 TTC21AQ8NDW8 1320 aa13.79□□□□□ -0.2
CHD4-207ENST00000537634 SBNO2Q9Y2G9 1366 aa13.79□□□□□ -0.2
CHD4-207ENST00000537634 CPSF1Q10570 1443 aaKnown RBP13.79□□□□□ -0.2
CHD4-207ENST00000537634 MON2Q7Z3U7 1717 aa13.78□□□□□ -0.2
CHD4-207ENST00000537634 COL18A1P39060 1754 aa13.78□□□□□ -0.2
CHD4-207ENST00000537634 CARD11Q9BXL7 1154 aa13.78□□□□□ -0.2
CHD4-207ENST00000537634 KTN1Q86UP2 1357 aaKnown RBP13.78□□□□□ -0.2
CHD4-207ENST00000537634 APBA3O96018 575 aa13.77□□□□□ -0.21
CHD4-207ENST00000537634 EZH2Q15910 746 aaKnown RBP13.77□□□□□ -0.21
CHD4-207ENST00000537634 KCNH5Q8NCM2 988 aa13.77□□□□□ -0.21
CHD4-207ENST00000537634 PARD3Q8TEW0 1356 aa13.77□□□□□ -0.21
CHD4-207ENST00000537634 WNK3Q9BYP7 1800 aa13.77□□□□□ -0.21
CHD4-207ENST00000537634 LRRC37A3O60309 1634 aa13.76□□□□□ -0.21
CHD4-207ENST00000537634 SOX12O15370 315 aa13.76□□□□□ -0.21
CHD4-207ENST00000537634 TOM1L2Q6ZVM7 507 aa13.76□□□□□ -0.21
CHD4-207ENST00000537634 RGPD5Q99666 1765 aa13.76□□□□□ -0.21
CHD4-207ENST00000537634 RREB1Q92766 1687 aa13.75□□□□□ -0.21
CHD4-207ENST00000537634 R3HDM1Q15032 1099 aaKnown RBP13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms