RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 PURBQ96QR8 312 aaKnown RBP8.62□□□□□ -1.03
USP48-215ENST00000534705 TIMP2P16035 220 aa8.61□□□□□ -1.03
USP48-215ENST00000534705 WDR4P57081 412 aaKnown RBP8.61□□□□□ -1.03
USP48-215ENST00000534705 SUZ12Q15022 739 aaKnown RBP8.6□□□□□ -1.03
USP48-215ENST00000534705 DESI1Q6ICB0 168 aa8.6□□□□□ -1.03
USP48-215ENST00000534705 FAM174AQ8TBP5 190 aa8.6□□□□□ -1.03
USP48-215ENST00000534705 CCDC102AQ96A19 550 aa8.6□□□□□ -1.03
USP48-215ENST00000534705 PCDHGC3Q9UN70 934 aa8.6□□□□□ -1.03
USP48-215ENST00000534705 SPDYE5A6NIY4 337 aa8.59□□□□□ -1.03
USP48-215ENST00000534705 MAN1A2O60476 641 aa8.57□□□□□ -1.04
USP48-215ENST00000534705 PRR7Q8TB68 274 aa8.57□□□□□ -1.04
USP48-215ENST00000534705 CDK15Q96Q40 435 aa8.56□□□□□ -1.04
USP48-215ENST00000534705 KLF16Q9BXK1 252 aaPredicted RBP8.56□□□□□ -1.04
USP48-215ENST00000534705 SOBPA7XYQ1 873 aa8.55□□□□□ -1.04
USP48-215ENST00000534705 UPP2O95045 317 aa8.55□□□□□ -1.04
USP48-215ENST00000534705 MTMR2Q13614 643 aa8.55□□□□□ -1.04
USP48-215ENST00000534705 SPIRE2Q8WWL2 714 aa8.55□□□□□ -1.04
USP48-215ENST00000534705 BCANQ96GW7 911 aa8.55□□□□□ -1.04
USP48-215ENST00000534705 PPFIA3O75145 1194 aa8.54□□□□□ -1.04
USP48-215ENST00000534705 NR5A1Q13285 461 aa8.54□□□□□ -1.04
USP48-215ENST00000534705 TMEM151AQ8N4L1 468 aa8.54□□□□□ -1.04
USP48-215ENST00000534705 ZIC2O95409 532 aaPredicted RBP8.53□□□□□ -1.04
USP48-215ENST00000534705 SSTR3P32745 418 aaPredicted RBP8.53□□□□□ -1.04
USP48-215ENST00000534705 CTHP32929 405 aa8.53□□□□□ -1.04
USP48-215ENST00000534705 KCTD17Q8N5Z5 321 aa8.53□□□□□ -1.04
USP48-215ENST00000534705 RNF225M0QZC1 329 aaPredicted RBP8.52□□□□□ -1.05
USP48-215ENST00000534705 NDUFV2P19404 249 aa8.52□□□□□ -1.05
USP48-215ENST00000534705 MOXD2PA6NHM9 499 aa8.51□□□□□ -1.05
USP48-215ENST00000534705 SPTLC1O15269 473 aa8.51□□□□□ -1.05
USP48-215ENST00000534705 ARID5BQ14865 1188 aa8.51□□□□□ -1.05
USP48-215ENST00000534705 C6orf118Q5T5N4 469 aa8.51□□□□□ -1.05
USP48-215ENST00000534705 BMP2P12643 396 aa8.5□□□□□ -1.05
USP48-215ENST00000534705 GJA5P36382 358 aa8.5□□□□□ -1.05
USP48-215ENST00000534705 LYPD8Q6UX82 237 aa8.5□□□□□ -1.05
USP48-215ENST00000534705 GDF11O95390 407 aa8.49□□□□□ -1.05
USP48-215ENST00000534705 GSK3AP49840 483 aa8.49□□□□□ -1.05
USP48-215ENST00000534705 ITPKCQ96DU7 683 aa8.49□□□□□ -1.05
USP48-215ENST00000534705 ZFAND3Q9H8U3 227 aa8.49□□□□□ -1.05
USP48-215ENST00000534705 RASSF7Q02833 373 aa8.48□□□□□ -1.05
USP48-215ENST00000534705 DIXDC1Q155Q3 683 aa8.48□□□□□ -1.05
USP48-215ENST00000534705 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.48□□□□□ -1.05
USP48-215ENST00000534705 AGERQ15109 404 aa8.47□□□□□ -1.05
USP48-215ENST00000534705 LINC00528Q8N1L1 170 aa8.47□□□□□ -1.05
USP48-215ENST00000534705 FOXJ1Q92949 421 aa8.47□□□□□ -1.05
USP48-215ENST00000534705 BPHLQ86WA6 291 aaPredicted RBP8.46□□□□□ -1.06
USP48-215ENST00000534705 SOS2Q07890 1332 aaPredicted RBP8.46□□□□□ -1.06
USP48-215ENST00000534705 NR3C2P08235 984 aa8.45□□□□□ -1.06
USP48-215ENST00000534705 GRM5P41594 1212 aa8.45□□□□□ -1.06
USP48-215ENST00000534705 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.45□□□□□ -1.062e-10■□□□□ 9.8
USP48-215ENST00000534705 MEIOBQ8N635 442 aa8.45□□□□□ -1.06
USP48-215ENST00000534705 TSEN34Q9BSV6 310 aaKnown RBP8.45□□□□□ -1.06
USP48-215ENST00000534705 ADAMTS8Q9UP79 889 aa8.45□□□□□ -1.06
USP48-215ENST00000534705 F12P00748 615 aaPredicted RBP8.43□□□□□ -1.06
USP48-215ENST00000534705 TTLL12Q14166 644 aaPredicted RBP8.43□□□□□ -1.06
USP48-215ENST00000534705 ARMC2Q8NEN0 867 aa8.43□□□□□ -1.06
USP48-215ENST00000534705 CNTNAP3BQ96NU0 1288 aa8.43□□□□□ -1.06
USP48-215ENST00000534705 CNTNAP3Q9BZ76 1288 aa8.43□□□□□ -1.06
USP48-215ENST00000534705 DNMT3LQ9UJW3 386 aa8.43□□□□□ -1.06
USP48-215ENST00000534705 RSBN1LQ6PCB5 846 aaPredicted RBP8.42□□□□□ -1.06
USP48-215ENST00000534705 ZBTB3Q9H5J0 574 aa8.42□□□□□ -1.06
USP48-215ENST00000534705 IGHA1P01876 353 aa8.41□□□□□ -1.06
USP48-215ENST00000534705 NANOS1Q8WY41 292 aaKnown RBP8.41□□□□□ -1.06
USP48-215ENST00000534705 BEGAINQ9BUH8 593 aa8.41□□□□□ -1.06
USP48-215ENST00000534705 MAP10Q9P2G4 905 aa8.41□□□□□ -1.06
USP48-215ENST00000534705 EMILIN1Q9Y6C2 1016 aa8.41□□□□□ -1.06
USP48-215ENST00000534705 CFAP99D6REC4 459 aa8.4□□□□□ -1.06
USP48-215ENST00000534705 KRT76Q01546 638 aa8.4□□□□□ -1.06
USP48-215ENST00000534705 C4orf48Q5BLP8 95 aa8.4□□□□□ -1.06
USP48-215ENST00000534705 PRPF38BQ5VTL8 546 aaKnown RBP8.4□□□□□ -1.06
USP48-215ENST00000534705 GPR161Q8N6U8 529 aaKnown RBP8.4□□□□□ -1.06
USP48-215ENST00000534705 TBC1D2Q9BYX2 928 aa8.4□□□□□ -1.06
USP48-215ENST00000534705 MAP4K5Q9Y4K4 846 aa8.4□□□□□ -1.06
USP48-215ENST00000534705 TTLL8A6PVC2 850 aa8.39□□□□□ -1.07
USP48-215ENST00000534705 AMHR2Q16671 573 aa8.39□□□□□ -1.07
USP48-215ENST00000534705 COL25A1Q9BXS0 654 aaPredicted RBP8.39□□□□□ -1.07
USP48-215ENST00000534705 HRCP23327 699 aa8.38□□□□□ -1.07
USP48-215ENST00000534705 PTSQ03393 145 aa8.38□□□□□ -1.07
USP48-215ENST00000534705 GIGYF2Q6Y7W6 1299 aaKnown RBP8.38□□□□□ -1.07
USP48-215ENST00000534705 VASH1Q7L8A9 365 aaPredicted RBP8.38□□□□□ -1.07
USP48-215ENST00000534705 FSHRP23945 695 aa8.37□□□□□ -1.07
USP48-215ENST00000534705 NBPF14Q5TI25 921 aa8.37□□□□□ -1.07
USP48-215ENST00000534705 ZNF385CQ66K41 422 aaPredicted RBP8.37□□□□□ -1.07
USP48-215ENST00000534705 TRMT44Q8IYL2 757 aaKnown RBP8.37□□□□□ -1.07
USP48-215ENST00000534705 SVOPQ8N4V2 548 aa8.37□□□□□ -1.07
USP48-215ENST00000534705 C1QTNF2Q9BXJ5 285 aa8.37□□□□□ -1.07
USP48-215ENST00000534705 PCDHB15Q9Y5E8 787 aa8.37□□□□□ -1.07
USP48-215ENST00000534705 DNMT3AQ9Y6K1 912 aaPredicted RBP8.37□□□□□ -1.07
USP48-215ENST00000534705 FOXK2Q01167 660 aa8.36□□□□□ -1.07
USP48-215ENST00000534705 KANK3Q6NY19 840 aa8.36□□□□□ -1.07
USP48-215ENST00000534705 CCDC116Q8IYX3 515 aa8.36□□□□□ -1.07
USP48-215ENST00000534705 MARSP56192 900 aaKnown RBP8.35□□□□□ -1.07
USP48-215ENST00000534705 SH3RF1Q7Z6J0 888 aa8.35□□□□□ -1.07
USP48-215ENST00000534705 CCDC155Q8N6L0 562 aa8.35□□□□□ -1.07
USP48-215ENST00000534705 ZC3H15Q8WU90 426 aaKnown RBP8.35□□□□□ -1.07
USP48-215ENST00000534705 ZMYND10O75800 440 aa8.34□□□□□ -1.07
USP48-215ENST00000534705 SLURP2P0DP57 97 aa8.34□□□□□ -1.07
USP48-215ENST00000534705 BARGINQ6ZT62 677 aa8.34□□□□□ -1.07
USP48-215ENST00000534705 RIC3Q7Z5B4 369 aa8.34□□□□□ -1.07
USP48-215ENST00000534705 SCARF2Q96GP6 870 aaPredicted RBP8.34□□□□□ -1.07
USP48-215ENST00000534705 PGPEP1Q9NXJ5 209 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms