RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 KRT27Q7Z3Y8 459 aa21.21■□□□□ 0.99
VPS28-215ENST00000531924 PLCH1Q4KWH8 1693 aa21.21■□□□□ 0.99
VPS28-215ENST00000531924 NWD2Q9ULI1 1742 aa21.21■□□□□ 0.99
VPS28-215ENST00000531924 ACEP12821 1306 aa21.2■□□□□ 0.98
VPS28-215ENST00000531924 CENPJQ9HC77 1338 aaPredicted RBP21.2■□□□□ 0.98
VPS28-215ENST00000531924 ABCA3Q99758 1704 aa21.2■□□□□ 0.98
VPS28-215ENST00000531924 ITSN1Q15811 1721 aa21.19■□□□□ 0.98
VPS28-215ENST00000531924 KIAA1210Q9ULL0 1709 aa21.19■□□□□ 0.98
VPS28-215ENST00000531924 ONECUT3O60422 494 aaPredicted RBP21.19■□□□□ 0.98
VPS28-215ENST00000531924 FAM98CQ17RN3 349 aaKnown RBP21.19■□□□□ 0.98
VPS28-215ENST00000531924 NBPF8Q3BBV2 869 aa21.19■□□□□ 0.98
VPS28-215ENST00000531924 NUTM2GQ5VZR2 741 aa21.19■□□□□ 0.98
VPS28-215ENST00000531924 EP400Q96L91 3159 aa21.19■□□□□ 0.98
VPS28-215ENST00000531924 BLMP54132 1417 aaPredicted RBP21.18■□□□□ 0.98
VPS28-215ENST00000531924 ALS2Q96Q42 1657 aa21.18■□□□□ 0.98
VPS28-215ENST00000531924 PLEKHG3A1L390 1219 aa21.17■□□□□ 0.98
VPS28-215ENST00000531924 NEUROD1Q13562 356 aa21.17■□□□□ 0.98
VPS28-215ENST00000531924 L3MBTL2Q969R5 705 aa21.17■□□□□ 0.98
VPS28-215ENST00000531924 ABTB2Q8N961 1025 aa21.16■□□□□ 0.98
VPS28-215ENST00000531924 COL14A1Q05707 1796 aaKnown RBP21.15■□□□□ 0.98
VPS28-215ENST00000531924 POLR3AO14802 1390 aaPredicted RBP21.15■□□□□ 0.98
VPS28-215ENST00000531924 ZC3H6P61129 1189 aaKnown RBP21.15■□□□□ 0.98
VPS28-215ENST00000531924 KIAA0232Q92628 1395 aa21.14■□□□□ 0.98
VPS28-215ENST00000531924 CHRNA2Q15822 529 aa21.14■□□□□ 0.97
VPS28-215ENST00000531924 SIN3AQ96ST3 1273 aa21.14■□□□□ 0.97
VPS28-215ENST00000531924 CABP2Q9NPB3 220 aa21.14■□□□□ 0.97
VPS28-215ENST00000531924 SPATA31A5Q5VU36 1347 aa21.13■□□□□ 0.97
VPS28-215ENST00000531924 SPATA31A7Q8IWB4 1347 aa21.13■□□□□ 0.97
VPS28-215ENST00000531924 EVA1CP58658 441 aa21.13■□□□□ 0.97
VPS28-215ENST00000531924 STRN4Q9NRL3 753 aa21.13■□□□□ 0.97
VPS28-215ENST00000531924 PPIP5K1Q6PFW1 1433 aa21.12■□□□□ 0.97
VPS28-215ENST00000531924 DEFB132Q7Z7B7 95 aa21.11■□□□□ 0.97
VPS28-215ENST00000531924 NLRP13Q86W25 1043 aa21.1■□□□□ 0.97
VPS28-215ENST00000531924 BRWD3Q6RI45 1802 aa21.09■□□□□ 0.97
VPS28-215ENST00000531924 NRAPQ86VF7 1730 aa21.09■□□□□ 0.97
VPS28-215ENST00000531924 EVC2Q86UK5 1308 aa21.08■□□□□ 0.97
VPS28-215ENST00000531924 BAG6P46379 1132 aa21.08■□□□□ 0.97
VPS28-215ENST00000531924 CABP1Q9NZU7 370 aa21.08■□□□□ 0.97
VPS28-215ENST00000531924 ROCK2O75116 1388 aaKnown RBP21.08■□□□□ 0.96
VPS28-215ENST00000531924 USP35Q9P2H5 1018 aa21.07■□□□□ 0.96
VPS28-215ENST00000531924 SPATA31A1Q5TZJ5 1347 aa21.06■□□□□ 0.96
VPS28-215ENST00000531924 TOPAZ1Q8N9V7 1692 aa21.06■□□□□ 0.96
VPS28-215ENST00000531924 CRYBG1Q9Y4K1 1723 aa21.04■□□□□ 0.96
VPS28-215ENST00000531924 ZBTB7CA1YPR0 619 aa21.04■□□□□ 0.96
VPS28-215ENST00000531924 FAM182BQ5T319 152 aa21.04■□□□□ 0.96
VPS28-215ENST00000531924 BRD4O60885 1362 aaPredicted RBP21.04■□□□□ 0.96
VPS28-215ENST00000531924 QRICH2Q9H0J4 1663 aa21.03■□□□□ 0.96
VPS28-215ENST00000531924 GCP02774 474 aa21.03■□□□□ 0.96
VPS28-215ENST00000531924 NLRP6P59044 892 aa21.03■□□□□ 0.96
VPS28-215ENST00000531924 PHRF1Q9P1Y6 1649 aaKnown RBP21.03■□□□□ 0.96
VPS28-215ENST00000531924 USP19O94966 1318 aa21.03■□□□□ 0.96
VPS28-215ENST00000531924 CPDO75976 1380 aa21.01■□□□□ 0.95
VPS28-215ENST00000531924 SRCAPQ6ZRS2 3230 aa21■□□□□ 0.95
VPS28-215ENST00000531924 PDE3BQ13370 1112 aa21■□□□□ 0.95
VPS28-215ENST00000531924 USP6P35125 1406 aa20.99■□□□□ 0.95
VPS28-215ENST00000531924 SSH2Q76I76 1423 aa20.99■□□□□ 0.95
VPS28-215ENST00000531924 LARP1Q6PKG0 1096 aaKnown RBP20.99■□□□□ 0.95
VPS28-215ENST00000531924 FAM196AQ6ZSG2 479 aa20.99■□□□□ 0.95
VPS28-215ENST00000531924 BARGINQ6ZT62 677 aa20.98■□□□□ 0.95
VPS28-215ENST00000531924 TCP11L2Q8N4U5 519 aa20.98■□□□□ 0.95
VPS28-215ENST00000531924 ZNF692Q9BU19 519 aaPredicted RBP20.98■□□□□ 0.95
VPS28-215ENST00000531924 NRKQ7Z2Y5 1582 aa20.97■□□□□ 0.95
VPS28-215ENST00000531924 TRPM1Q7Z4N2 1603 aa20.97■□□□□ 0.95
VPS28-215ENST00000531924 EN1Q05925 392 aaPredicted RBP20.96■□□□□ 0.95
VPS28-215ENST00000531924 CARD11Q9BXL7 1154 aa20.95■□□□□ 0.94
VPS28-215ENST00000531924 THRAP3Q9Y2W1 955 aaKnown RBP20.95■□□□□ 0.94
VPS28-215ENST00000531924 THSD7AQ9UPZ6 1657 aa20.95■□□□□ 0.94
VPS28-215ENST00000531924 CAMTA1Q9Y6Y1 1673 aa20.95■□□□□ 0.94
VPS28-215ENST00000531924 TRIM37O94972 964 aa20.94■□□□□ 0.94
VPS28-215ENST00000531924 TONSLQ96HA7 1378 aa20.94■□□□□ 0.94
VPS28-215ENST00000531924 PSDA5PKW4 1024 aaPredicted RBP20.92■□□□□ 0.94
VPS28-215ENST00000531924 SOX12O15370 315 aa20.91■□□□□ 0.94
VPS28-215ENST00000531924 APBA3O96018 575 aa20.91■□□□□ 0.94
VPS28-215ENST00000531924 AATKQ6ZMQ8 1374 aa20.91■□□□□ 0.94
VPS28-215ENST00000531924 TTC21BQ7Z4L5 1316 aa20.91■□□□□ 0.94
VPS28-215ENST00000531924 KCNH5Q8NCM2 988 aa20.91■□□□□ 0.94
VPS28-215ENST00000531924 RGPD1P0DJD0 1748 aa20.9■□□□□ 0.94
VPS28-215ENST00000531924 TTC21AQ8NDW8 1320 aa20.9■□□□□ 0.94
VPS28-215ENST00000531924 TOM1L2Q6ZVM7 507 aa20.9■□□□□ 0.94
VPS28-215ENST00000531924 COL5A2P05997 1499 aaPredicted RBP20.89■□□□□ 0.94
VPS28-215ENST00000531924 KTN1Q86UP2 1357 aaKnown RBP20.89■□□□□ 0.93
VPS28-215ENST00000531924 CRB1P82279 1406 aa20.88■□□□□ 0.93
VPS28-215ENST00000531924 TMC1Q8TDI8 760 aa20.88■□□□□ 0.93
VPS28-215ENST00000531924 LMO7Q8WWI1 1683 aa20.88■□□□□ 0.93
VPS28-215ENST00000531924 CSB-PGBD3P0DP91 1061 aa20.87■□□□□ 0.93
VPS28-215ENST00000531924 EZH2Q15910 746 aaKnown RBP20.87■□□□□ 0.93
VPS28-215ENST00000531924 C11orf95C9JLR9 678 aaPredicted RBP20.86■□□□□ 0.93
VPS28-215ENST00000531924 SLIT3O75094 1523 aa20.86■□□□□ 0.93
VPS28-215ENST00000531924 DISP2A7MBM2 1401 aa20.86■□□□□ 0.93
VPS28-215ENST00000531924 R3HDM1Q15032 1099 aaKnown RBP20.85■□□□□ 0.93
VPS28-215ENST00000531924 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.85■□□□□ 0.93
VPS28-215ENST00000531924 HDGFL2Q7Z4V5 671 aaPredicted RBP20.84■□□□□ 0.93
VPS28-215ENST00000531924 ARHGEF25Q86VW2 580 aa20.84■□□□□ 0.93
VPS28-215ENST00000531924 PARD3Q8TEW0 1356 aa20.84■□□□□ 0.93
VPS28-215ENST00000531924 SBNO2Q9Y2G9 1366 aa20.84■□□□□ 0.93
VPS28-215ENST00000531924 PIK3C2AO00443 1686 aa20.83■□□□□ 0.93
VPS28-215ENST00000531924 DDB1Q16531 1140 aa20.83■□□□□ 0.93
VPS28-215ENST00000531924 CAMKK2Q96RR4 588 aa20.83■□□□□ 0.93
VPS28-215ENST00000531924 CPSF1Q10570 1443 aaKnown RBP20.83■□□□□ 0.93
VPS28-215ENST00000531924 WDR17Q8IZU2 1322 aa20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms