RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 TTC24A2A3L6 582 aaPredicted RBP5.59□□□□□ -1.51
CD44-234ENST00000531873 WNT7AO00755 349 aa5.59□□□□□ -1.51
CD44-234ENST00000531873 SOCS7O14512 581 aa5.59□□□□□ -1.51
CD44-234ENST00000531873 RAD21O60216 631 aa5.59□□□□□ -1.51
CD44-234ENST00000531873 CSPP1Q1MSJ5 1256 aa5.59□□□□□ -1.51
CD44-234ENST00000531873 NUTM1Q86Y26 1132 aa5.59□□□□□ -1.51
CD44-234ENST00000531873 KIFC2Q96AC6 838 aa5.59□□□□□ -1.51
CD44-234ENST00000531873 THAP11Q96EK4 314 aa5.59□□□□□ -1.51
CD44-234ENST00000531873 FCF1Q9Y324 198 aaKnown RBP5.59□□□□□ -1.51
CD44-234ENST00000531873 TRIM26Q12899 539 aaPredicted RBP5.58□□□□□ -1.52
CD44-234ENST00000531873 RTL5Q5HYW3 569 aaPredicted RBP5.58□□□□□ -1.52
CD44-234ENST00000531873 SNIP1Q8TAD8 396 aaKnown RBP5.58□□□□□ -1.52
CD44-234ENST00000531873 HOXA2O43364 376 aa5.57□□□□□ -1.52
CD44-234ENST00000531873 KDM4AO75164 1064 aa5.57□□□□□ -1.52
CD44-234ENST00000531873 USP17L8P0C7I0 530 aa5.57□□□□□ -1.52
CD44-234ENST00000531873 SUZ12Q15022 739 aaKnown RBP5.57□□□□□ -1.52
CD44-234ENST00000531873 PUS10Q3MIT2 529 aaKnown RBP5.57□□□□□ -1.52
CD44-234ENST00000531873 NPAS3Q8IXF0 933 aa5.57□□□□□ -1.52
CD44-234ENST00000531873 ZSCAN1Q8NBB4 408 aa5.57□□□□□ -1.52
CD44-234ENST00000531873 RDH13Q8NBN7 331 aa5.57□□□□□ -1.52
CD44-234ENST00000531873 CABLES1Q8TDN4 633 aa5.57□□□□□ -1.52
CD44-234ENST00000531873 SLC16A10Q8TF71 515 aa5.57□□□□□ -1.52
CD44-234ENST00000531873 HLA-CQ95604 372 aa5.57□□□□□ -1.52
CD44-234ENST00000531873 GDPD2Q9HCC8 539 aa5.57□□□□□ -1.52
CD44-234ENST00000531873 HRCP23327 699 aa5.56□□□□□ -1.52
CD44-234ENST00000531873 GCGRP47871 477 aa5.56□□□□□ -1.52
CD44-234ENST00000531873 PRPF38BQ5VTL8 546 aaKnown RBP5.56□□□□□ -1.52
CD44-234ENST00000531873 FAM160A2Q8N612 972 aaPredicted RBP5.56□□□□□ -1.52
CD44-234ENST00000531873 GJD4Q96KN9 370 aaPredicted RBP5.56□□□□□ -1.52
CD44-234ENST00000531873 PODXL2Q9NZ53 605 aa5.56□□□□□ -1.52
CD44-234ENST00000531873 PCDHGC3Q9UN70 934 aa5.56□□□□□ -1.52
CD44-234ENST00000531873 TBC1D2BQ9UPU7 963 aa5.56□□□□□ -1.52
CD44-234ENST00000531873 SALL2Q9Y467 1007 aaPredicted RBP5.56□□□□□ -1.52
CD44-234ENST00000531873 GPR37L1O60883 481 aa5.55□□□□□ -1.52
CD44-234ENST00000531873 GMPRP36959 345 aa5.55□□□□□ -1.52
CD44-234ENST00000531873 GUCA2AQ02747 115 aa5.55□□□□□ -1.52
CD44-234ENST00000531873 MORN1Q5T089 497 aa5.55□□□□□ -1.52
CD44-234ENST00000531873 RSPH4AQ5TD94 716 aa5.55□□□□□ -1.52
CD44-234ENST00000531873 NXF1Q9UBU9 619 aaKnown RBP5.55□□□□□ -1.52
CD44-234ENST00000531873 ZNF330Q9Y3S2 320 aaPredicted RBP5.55□□□□□ -1.52
CD44-234ENST00000531873 POM121CA8CG34 1229 aa5.54□□□□□ -1.52
CD44-234ENST00000531873 AP1G2O75843 785 aa5.54□□□□□ -1.52
CD44-234ENST00000531873 USP46P62068 366 aa5.54□□□□□ -1.52
CD44-234ENST00000531873 CCDC97Q96F63 343 aaPredicted RBP5.54□□□□□ -1.52
CD44-234ENST00000531873 ZBTB3Q9H5J0 574 aa5.54□□□□□ -1.52
CD44-234ENST00000531873 HMX1Q9NP08 348 aaPredicted RBP5.54□□□□□ -1.52
CD44-234ENST00000531873 SERPINA10Q9UK55 444 aa5.54□□□□□ -1.52
CD44-234ENST00000531873 J3QL48 77 aa5.53□□□□□ -1.52
CD44-234ENST00000531873 ZBTB24O43167 697 aaPredicted RBP5.53□□□□□ -1.52
CD44-234ENST00000531873 FMNL1O95466 1100 aaPredicted RBP5.53□□□□□ -1.52
CD44-234ENST00000531873 FDX1P10109 184 aa5.53□□□□□ -1.52
CD44-234ENST00000531873 IRF7Q92985 503 aa5.53□□□□□ -1.52
CD44-234ENST00000531873 NUTM2BA6NNL0 878 aaPredicted RBP5.52□□□□□ -1.53
CD44-234ENST00000531873 NUTM2EB1AL46 878 aaPredicted RBP5.52□□□□□ -1.53
CD44-234ENST00000531873 ABL2P42684 1182 aa5.52□□□□□ -1.53
CD44-234ENST00000531873 IRF5Q13568 498 aa5.52□□□□□ -1.53
CD44-234ENST00000531873 MSS51Q4VC12 460 aa5.52□□□□□ -1.53
CD44-234ENST00000531873 NUTM2DQ5VT03 806 aaPredicted RBP5.52□□□□□ -1.53
CD44-234ENST00000531873 NUTM2AQ8IVF1 878 aaPredicted RBP5.52□□□□□ -1.53
CD44-234ENST00000531873 HPS1Q92902 700 aa5.52□□□□□ -1.53
CD44-234ENST00000531873 MRGPRX2Q96LB1 330 aa5.52□□□□□ -1.53
CD44-234ENST00000531873 TRIM34Q9BYJ4 488 aa5.52□□□□□ -1.53
CD44-234ENST00000531873 ATP6V1AP38606 617 aa5.51□□□□□ -1.53
CD44-234ENST00000531873 TRIM32Q13049 653 aa5.51□□□□□ -1.53
CD44-234ENST00000531873 BRICD5Q6PL45 260 aa5.51□□□□□ -1.53
CD44-234ENST00000531873 ADAMTS19Q8TE59 1207 aa5.51□□□□□ -1.53
CD44-234ENST00000531873 GLMNQ92990 594 aa5.51□□□□□ -1.53
CD44-234ENST00000531873 CFAP99D6REC4 459 aa5.5□□□□□ -1.53
CD44-234ENST00000531873 H3BM21 787 aa5.5□□□□□ -1.53
CD44-234ENST00000531873 CTDSPL2Q05D32 466 aa5.5□□□□□ -1.53
CD44-234ENST00000531873 FUT2Q10981 343 aa5.5□□□□□ -1.53
CD44-234ENST00000531873 MTMR2Q13614 643 aa5.5□□□□□ -1.53
CD44-234ENST00000531873 SLC27A5Q9Y2P5 690 aa5.5□□□□□ -1.53
CD44-234ENST00000531873 NDUFB9Q9Y6M9 179 aa5.5□□□□□ -1.53
CD44-234ENST00000531873 PDIA4P13667 645 aaKnown RBP5.49□□□□□ -1.53
CD44-234ENST00000531873 LRRN4Q8WUT4 740 aa5.49□□□□□ -1.53
CD44-234ENST00000531873 PRDM9Q9NQV7 894 aa5.49□□□□□ -1.53
CD44-234ENST00000531873 MMP16P51512 607 aa5.48□□□□□ -1.53
CD44-234ENST00000531873 CALR3Q96L12 384 aaKnown RBP5.48□□□□□ -1.53
CD44-234ENST00000531873 KCNMA1Q12791 1236 aa5.47□□□□□ -1.53
CD44-234ENST00000531873 WWC1Q8IX03 1113 aa5.47□□□□□ -1.53
CD44-234ENST00000531873 RETREG2Q8NC44 543 aa5.47□□□□□ -1.53
CD44-234ENST00000531873 HELBQ8NG08 1087 aaPredicted RBP5.47□□□□□ -1.53
CD44-234ENST00000531873 EPS8L1Q8TE68 723 aa5.47□□□□□ -1.53
CD44-234ENST00000531873 SYMPKQ92797 1274 aaKnown RBP5.47□□□□□ -1.53
CD44-234ENST00000531873 TRAIPQ9BWF2 469 aa5.47□□□□□ -1.53
CD44-234ENST00000531873 PRM3Q9NNZ6 103 aa5.47□□□□□ -1.53
CD44-234ENST00000531873 ERBB4Q15303 1308 aa5.47□□□□□ -1.53
CD44-234ENST00000531873 C6orf229H3BNL8 230 aa5.45□□□□□ -1.54
CD44-234ENST00000531873 GSK3AP49840 483 aa5.45□□□□□ -1.54
CD44-234ENST00000531873 WNT7BP56706 349 aa5.45□□□□□ -1.54
CD44-234ENST00000531873 RC3H1Q5TC82 1133 aaKnown RBP5.45□□□□□ -1.54
CD44-234ENST00000531873 TRIM46Q7Z4K8 759 aa5.45□□□□□ -1.54
CD44-234ENST00000531873 TSC1Q92574 1164 aa5.45□□□□□ -1.54
CD44-234ENST00000531873 PER1O15534 1290 aaPredicted RBP5.44□□□□□ -1.54
CD44-234ENST00000531873 VAC14Q08AM6 782 aa5.44□□□□□ -1.54
CD44-234ENST00000531873 GRIPAP1Q4V328 841 aa5.44□□□□□ -1.54
CD44-234ENST00000531873 CFAP70Q5T0N1 1121 aa5.44□□□□□ -1.54
CD44-234ENST00000531873 RNF19BQ6ZMZ0 732 aa5.44□□□□□ -1.54
CD44-234ENST00000531873 PRR7Q8TB68 274 aa5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms