RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 ZNF692Q9BU19 519 aaPredicted RBP20.21■□□□□ 0.83
CPSF1-206ENST00000531480 CRYBG1Q9Y4K1 1723 aa20.2■□□□□ 0.82
CPSF1-206ENST00000531480 SLC12A5Q9H2X9 1139 aa20.2■□□□□ 0.82
CPSF1-206ENST00000531480 RGS17Q9UGC6 210 aaPredicted RBP20.2■□□□□ 0.82
CPSF1-206ENST00000531480 SPATA31A6Q5VVP1 1343 aa20.2■□□□□ 0.82
CPSF1-206ENST00000531480 C11orf95C9JLR9 678 aaPredicted RBP20.19■□□□□ 0.82
CPSF1-206ENST00000531480 ARHGEF10O15013 1369 aa20.19■□□□□ 0.82
CPSF1-206ENST00000531480 ABCA3Q99758 1704 aa20.18■□□□□ 0.82
CPSF1-206ENST00000531480 LRP6O75581 1613 aa20.17■□□□□ 0.82
CPSF1-206ENST00000531480 A0A1W2PP64 1363 aa20.17■□□□□ 0.82
CPSF1-206ENST00000531480 ANKRD36BQ8N2N9 1353 aa20.17■□□□□ 0.82
CPSF1-206ENST00000531480 USP54Q70EL1 1684 aa20.16■□□□□ 0.82
CPSF1-206ENST00000531480 TERF2IPQ9NYB0 399 aa20.15■□□□□ 0.82
CPSF1-206ENST00000531480 KTN1Q86UP2 1357 aaKnown RBP20.15■□□□□ 0.82
CPSF1-206ENST00000531480 PIK3C2AO00443 1686 aa20.15■□□□□ 0.82
CPSF1-206ENST00000531480 MARF1Q9Y4F3 1742 aaKnown RBP20.14■□□□□ 0.81
CPSF1-206ENST00000531480 EDC4Q6P2E9 1401 aaKnown RBP20.14■□□□□ 0.81
CPSF1-206ENST00000531480 TMC1Q8TDI8 760 aa20.14■□□□□ 0.81
CPSF1-206ENST00000531480 KIF7Q2M1P5 1343 aa20.13■□□□□ 0.81
CPSF1-206ENST00000531480 TTC21AQ8NDW8 1320 aa20.13■□□□□ 0.81
CPSF1-206ENST00000531480 HDGFL2Q7Z4V5 671 aaPredicted RBP20.13■□□□□ 0.81
CPSF1-206ENST00000531480 TTC21BQ7Z4L5 1316 aa20.12■□□□□ 0.81
CPSF1-206ENST00000531480 POTEAQ6S8J7 498 aa20.12■□□□□ 0.81
CPSF1-206ENST00000531480 PHRF1Q9P1Y6 1649 aaKnown RBP20.1■□□□□ 0.81
CPSF1-206ENST00000531480 MEX3CQ5U5Q3 659 aaKnown RBP20.1■□□□□ 0.81
CPSF1-206ENST00000531480 CCDC7Q96M83 1385 aa20.09■□□□□ 0.81
CPSF1-206ENST00000531480 USP19O94966 1318 aa20.09■□□□□ 0.81
CPSF1-206ENST00000531480 PAK3O75914 559 aaPredicted RBP20.09■□□□□ 0.81
CPSF1-206ENST00000531480 USP31Q70CQ4 1352 aa20.08■□□□□ 0.81
CPSF1-206ENST00000531480 WASHC2AQ641Q2 1341 aa20.08■□□□□ 0.81
CPSF1-206ENST00000531480 SLIT3O75094 1523 aa20.07■□□□□ 0.8
CPSF1-206ENST00000531480 NUTM2BA6NNL0 878 aaPredicted RBP20.07■□□□□ 0.8
CPSF1-206ENST00000531480 NUTM2EB1AL46 878 aaPredicted RBP20.07■□□□□ 0.8
CPSF1-206ENST00000531480 NUTM2AQ8IVF1 878 aaPredicted RBP20.07■□□□□ 0.8
CPSF1-206ENST00000531480 ABTB2Q8N961 1025 aa20.06■□□□□ 0.8
CPSF1-206ENST00000531480 CARD14Q9BXL6 1004 aa20.05■□□□□ 0.8
CPSF1-206ENST00000531480 LMOD2Q6P5Q4 547 aa20.04■□□□□ 0.8
CPSF1-206ENST00000531480 NLRP13Q86W25 1043 aa20.04■□□□□ 0.8
CPSF1-206ENST00000531480 KIF20BQ96Q89 1820 aa20.04■□□□□ 0.8
CPSF1-206ENST00000531480 OVOS2A0A0J9YW53 1432 aa20.03■□□□□ 0.8
CPSF1-206ENST00000531480 OVOS2Q6IE36 1432 aa20.03■□□□□ 0.8
CPSF1-206ENST00000531480 CABLES1Q8TDN4 633 aa20.02■□□□□ 0.8
CPSF1-206ENST00000531480 NSD3Q9BZ95 1437 aa20.02■□□□□ 0.79
CPSF1-206ENST00000531480 NLRP6P59044 892 aa20■□□□□ 0.79
CPSF1-206ENST00000531480 NUTM2GQ5VZR2 741 aa20■□□□□ 0.79
CPSF1-206ENST00000531480 NME9Q86XW9 330 aa20■□□□□ 0.79
CPSF1-206ENST00000531480 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20■□□□□ 0.79
CPSF1-206ENST00000531480 NFAT5O94916 1531 aa20■□□□□ 0.79
CPSF1-206ENST00000531480 CPDO75976 1380 aa19.99■□□□□ 0.79
CPSF1-206ENST00000531480 FYB1O15117 783 aa19.99■□□□□ 0.79
CPSF1-206ENST00000531480 POLR3GLQ9BT43 218 aa19.99■□□□□ 0.79
CPSF1-206ENST00000531480 PANK3Q9H999 370 aa19.99■□□□□ 0.79
CPSF1-206ENST00000531480 NWD2Q9ULI1 1742 aa19.99■□□□□ 0.79
CPSF1-206ENST00000531480 ANKRD26Q9UPS8 1709 aa19.99■□□□□ 0.79
CPSF1-206ENST00000531480 COL14A1Q05707 1796 aaKnown RBP19.98■□□□□ 0.79
CPSF1-206ENST00000531480 SLIT2O94813 1529 aa19.98■□□□□ 0.79
CPSF1-206ENST00000531480 GCP02774 474 aa19.98■□□□□ 0.79
CPSF1-206ENST00000531480 PLCH1Q4KWH8 1693 aa19.97■□□□□ 0.79
CPSF1-206ENST00000531480 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.97■□□□□ 0.79
CPSF1-206ENST00000531480 FNBP4Q8N3X1 1017 aaPredicted RBP19.97■□□□□ 0.79
CPSF1-206ENST00000531480 PER1O15534 1290 aaPredicted RBP19.96■□□□□ 0.79
CPSF1-206ENST00000531480 ZRANB1Q9UGI0 708 aa19.96■□□□□ 0.79
CPSF1-206ENST00000531480 LMO7Q8WWI1 1683 aa19.96■□□□□ 0.79
CPSF1-206ENST00000531480 ADAMTS2O95450 1211 aa19.95■□□□□ 0.78
CPSF1-206ENST00000531480 COL18A1P39060 1754 aa19.95■□□□□ 0.78
CPSF1-206ENST00000531480 ABCC6O95255 1503 aa19.94■□□□□ 0.78
CPSF1-206ENST00000531480 ZNF772Q68DY9 489 aaPredicted RBP19.94■□□□□ 0.78
CPSF1-206ENST00000531480 KCNH5Q8NCM2 988 aa19.94■□□□□ 0.78
CPSF1-206ENST00000531480 AFF2P51816 1311 aa19.94■□□□□ 0.78
CPSF1-206ENST00000531480 CGNL1Q0VF96 1302 aa19.94■□□□□ 0.78
CPSF1-206ENST00000531480 NRAPQ86VF7 1730 aa19.93■□□□□ 0.78
CPSF1-206ENST00000531480 BCL9LQ86UU0 1499 aa19.93■□□□□ 0.78
CPSF1-206ENST00000531480 FAM83GA6ND36 823 aa19.93■□□□□ 0.78
CPSF1-206ENST00000531480 C8orf37Q96NL8 207 aa19.93■□□□□ 0.78
CPSF1-206ENST00000531480 NSD2O96028 1365 aa19.93■□□□□ 0.78
CPSF1-206ENST00000531480 KIAA0232Q92628 1395 aa19.93■□□□□ 0.78
CPSF1-206ENST00000531480 HAP1P54257 671 aaPredicted RBP19.92■□□□□ 0.78
CPSF1-206ENST00000531480 LTN1O94822 1766 aa19.91■□□□□ 0.78
CPSF1-206ENST00000531480 ARHGEF25Q86VW2 580 aa19.91■□□□□ 0.78
CPSF1-206ENST00000531480 COG3Q96JB2 828 aa19.91■□□□□ 0.78
CPSF1-206ENST00000531480 AMER1Q5JTC6 1135 aaPredicted RBP19.9■□□□□ 0.78
CPSF1-206ENST00000531480 NGLY1Q96IV0 654 aa19.9■□□□□ 0.78
CPSF1-206ENST00000531480 GGNBP2Q9H3C7 697 aa19.9■□□□□ 0.78
CPSF1-206ENST00000531480 AATKQ6ZMQ8 1374 aa19.9■□□□□ 0.78
CPSF1-206ENST00000531480 NPC1L1Q9UHC9 1359 aa19.9■□□□□ 0.78
CPSF1-206ENST00000531480 CAMTA1Q9Y6Y1 1673 aa19.88■□□□□ 0.77
CPSF1-206ENST00000531480 PLEKHG5O94827 1062 aa19.88■□□□□ 0.77
CPSF1-206ENST00000531480 ZC3H6P61129 1189 aaKnown RBP19.88■□□□□ 0.77
CPSF1-206ENST00000531480 PRDM11Q9NQV5 511 aa19.88■□□□□ 0.77
CPSF1-206ENST00000531480 KNSTRNQ9Y448 316 aa19.88■□□□□ 0.77
CPSF1-206ENST00000531480 ATRNO75882 1429 aa19.86■□□□□ 0.77
CPSF1-206ENST00000531480 RGPD5Q99666 1765 aa19.85■□□□□ 0.77
CPSF1-206ENST00000531480 UNC5CLQ8IV45 518 aa19.85■□□□□ 0.77
CPSF1-206ENST00000531480 RXRBP28702 533 aa19.84■□□□□ 0.77
CPSF1-206ENST00000531480 USP21Q9UK80 565 aa19.84■□□□□ 0.77
CPSF1-206ENST00000531480 MAP2P11137 1827 aaKnown RBP19.83■□□□□ 0.77
CPSF1-206ENST00000531480 CHRNA2Q15822 529 aa19.83■□□□□ 0.77
CPSF1-206ENST00000531480 BTG4Q9NY30 223 aa19.83■□□□□ 0.77
CPSF1-206ENST00000531480 COL5A2P05997 1499 aaPredicted RBP19.83■□□□□ 0.76
CPSF1-206ENST00000531480 KIF24Q5T7B8 1368 aa19.83■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms