RNA–Protein interactions for RNA: ENST00000531466.1

PTPRK-220, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 5

Gene PTPRK, Length 311 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-220ENST00000531466 VARSP26640 1264 aaKnown RBP12.47□□□□□ -0.41
PTPRK-220ENST00000531466 TRIM66O15016 1216 aa12.46□□□□□ -0.41
PTPRK-220ENST00000531466 GJA5P36382 358 aa12.46□□□□□ -0.41
PTPRK-220ENST00000531466 NNTQ13423 1086 aa12.46□□□□□ -0.41
PTPRK-220ENST00000531466 LYPD8Q6UX82 237 aa12.46□□□□□ -0.41
PTPRK-220ENST00000531466 PLEKHG3A1L390 1219 aa12.45□□□□□ -0.42
PTPRK-220ENST00000531466 DIXDC1Q155Q3 683 aa12.45□□□□□ -0.42
PTPRK-220ENST00000531466 NXF1Q9UBU9 619 aaKnown RBP12.45□□□□□ -0.42
PTPRK-220ENST00000531466 SPTLC1O15269 473 aa12.44□□□□□ -0.42
PTPRK-220ENST00000531466 HRCP23327 699 aa12.44□□□□□ -0.42
PTPRK-220ENST00000531466 MAP10Q9P2G4 905 aa12.44□□□□□ -0.42
PTPRK-220ENST00000531466 CSPP1Q1MSJ5 1256 aa12.43□□□□□ -0.42
PTPRK-220ENST00000531466 CABLES1Q8TDN4 633 aa12.43□□□□□ -0.42
PTPRK-220ENST00000531466 SLC16A10Q8TF71 515 aa12.43□□□□□ -0.42
PTPRK-220ENST00000531466 ZFP42Q96MM3 310 aa12.43□□□□□ -0.42
PTPRK-220ENST00000531466 ZBTB3Q9H5J0 574 aa12.43□□□□□ -0.42
PTPRK-220ENST00000531466 VEGFBP49765 207 aa12.42□□□□□ -0.42
PTPRK-220ENST00000531466 RIC3Q7Z5B4 369 aa12.42□□□□□ -0.42
PTPRK-220ENST00000531466 FOXJ1Q92949 421 aa12.42□□□□□ -0.42
PTPRK-220ENST00000531466 MPNDQ8N594 471 aa12.41□□□□□ -0.42
PTPRK-220ENST00000531466 FAM174AQ8TBP5 190 aa12.41□□□□□ -0.42
PTPRK-220ENST00000531466 WDR4P57081 412 aaKnown RBP12.4□□□□□ -0.42
PTPRK-220ENST00000531466 AK7Q96M32 723 aa12.4□□□□□ -0.42
PTPRK-220ENST00000531466 F12P00748 615 aaPredicted RBP12.39□□□□□ -0.43
PTPRK-220ENST00000531466 TIMP2P16035 220 aa12.39□□□□□ -0.43
PTPRK-220ENST00000531466 GMPRP36959 345 aa12.38□□□□□ -0.43
PTPRK-220ENST00000531466 ARID5BQ14865 1188 aa12.38□□□□□ -0.43
PTPRK-220ENST00000531466 MRPL14Q6P1L8 145 aaKnown RBP12.38□□□□□ -0.43
PTPRK-220ENST00000531466 PER1O15534 1290 aaPredicted RBP12.37□□□□□ -0.43
PTPRK-220ENST00000531466 ADH1CP00326 375 aa12.37□□□□□ -0.43
PTPRK-220ENST00000531466 PRPF38BQ5VTL8 546 aaKnown RBP12.37□□□□□ -0.43
PTPRK-220ENST00000531466 TSC1Q92574 1164 aa12.37□□□□□ -0.43
PTPRK-220ENST00000531466 PURBQ96QR8 312 aaKnown RBP12.37□□□□□ -0.43
PTPRK-220ENST00000531466 LIMD1Q9UGP4 676 aa12.36□□□□□ -0.43
PTPRK-220ENST00000531466 H3BM21 787 aa12.35□□□□□ -0.43
PTPRK-220ENST00000531466 SCARF1Q14162 830 aa12.35□□□□□ -0.43
PTPRK-220ENST00000531466 AGERQ15109 404 aa12.35□□□□□ -0.43
PTPRK-220ENST00000531466 IRF7Q92985 503 aa12.35□□□□□ -0.43
PTPRK-220ENST00000531466 SOBPA7XYQ1 873 aa12.34□□□□□ -0.43
PTPRK-220ENST00000531466 C4orf48Q5BLP8 95 aa12.34□□□□□ -0.43
PTPRK-220ENST00000531466 KLF16Q9BXK1 252 aaPredicted RBP12.34□□□□□ -0.43
PTPRK-220ENST00000531466 NUTM2BA6NNL0 878 aaPredicted RBP12.33□□□□□ -0.44
PTPRK-220ENST00000531466 NUTM2EB1AL46 878 aaPredicted RBP12.33□□□□□ -0.44
PTPRK-220ENST00000531466 QPCTQ16769 361 aa12.33□□□□□ -0.44
PTPRK-220ENST00000531466 NUTM2DQ5VT03 806 aaPredicted RBP12.33□□□□□ -0.44
PTPRK-220ENST00000531466 MYSM1Q5VVJ2 828 aa12.33□□□□□ -0.44
PTPRK-220ENST00000531466 NUTM2AQ8IVF1 878 aaPredicted RBP12.33□□□□□ -0.44
PTPRK-220ENST00000531466 NPAS3Q8IXF0 933 aa12.33□□□□□ -0.44
PTPRK-220ENST00000531466 CDK15Q96Q40 435 aa12.33□□□□□ -0.44
PTPRK-220ENST00000531466 ZFAND3Q9H8U3 227 aa12.33□□□□□ -0.44
PTPRK-220ENST00000531466 ERBB4Q15303 1308 aa12.33□□□□□ -0.44
PTPRK-220ENST00000531466 ZIC2O95409 532 aaPredicted RBP12.31□□□□□ -0.44
PTPRK-220ENST00000531466 NR3C2P08235 984 aa12.31□□□□□ -0.44
PTPRK-220ENST00000531466 PDE4DQ08499 809 aa12.31□□□□□ -0.44
PTPRK-220ENST00000531466 ITPKCQ96DU7 683 aa12.3□□□□□ -0.44
PTPRK-220ENST00000531466 BPHLQ86WA6 291 aaPredicted RBP12.29□□□□□ -0.44
PTPRK-220ENST00000531466 C6orf118Q5T5N4 469 aa12.28□□□□□ -0.44
PTPRK-220ENST00000531466 LILRB3O75022 631 aa12.27□□□□□ -0.45
PTPRK-220ENST00000531466 GRM5P41594 1212 aa12.27□□□□□ -0.45
PTPRK-220ENST00000531466 NR5A1Q13285 461 aa12.27□□□□□ -0.45
PTPRK-220ENST00000531466 LORP23490 312 aaPredicted RBP12.26□□□□□ -0.45
PTPRK-220ENST00000531466 ZSCAN1Q8NBB4 408 aa12.26□□□□□ -0.45
PTPRK-220ENST00000531466 RTL5Q5HYW3 569 aaPredicted RBP12.25□□□□□ -0.45
PTPRK-220ENST00000531466 TUSC1Q2TAM9 212 aa12.24□□□□□ -0.45
PTPRK-220ENST00000531466 ARMC2Q8NEN0 867 aa12.24□□□□□ -0.45
PTPRK-220ENST00000531466 SLC24A3Q9HC58 644 aa12.24□□□□□ -0.45
PTPRK-220ENST00000531466 FAM181BA6NEQ2 426 aa12.23□□□□□ -0.45
PTPRK-220ENST00000531466 HELBQ8NG08 1087 aaPredicted RBP12.23□□□□□ -0.45
PTPRK-220ENST00000531466 C1QTNF2Q9BXJ5 285 aa12.23□□□□□ -0.45
PTPRK-220ENST00000531466 MAN1A2O60476 641 aa12.22□□□□□ -0.45
PTPRK-220ENST00000531466 FSHRP23945 695 aa12.22□□□□□ -0.45
PTPRK-220ENST00000531466 MAGEB6P1A0A0J9YX57 407 aa12.21□□□□□ -0.45
PTPRK-220ENST00000531466 BMP2P12643 396 aa12.21□□□□□ -0.45
PTPRK-220ENST00000531466 CLK2P49760 499 aaKnown RBP12.21□□□□□ -0.45
PTPRK-220ENST00000531466 NBPF14Q5TI25 921 aa12.21□□□□□ -0.45
PTPRK-220ENST00000531466 SH3RF1Q7Z6J0 888 aa12.2□□□□□ -0.46
PTPRK-220ENST00000531466 POLR3EQ9NVU0 708 aa12.2□□□□□ -0.46
PTPRK-220ENST00000531466 UPP2O95045 317 aa12.19□□□□□ -0.46
PTPRK-220ENST00000531466 VASH1Q7L8A9 365 aaPredicted RBP12.19□□□□□ -0.46
PTPRK-220ENST00000531466 SH3BP5LQ7L8J4 393 aa12.19□□□□□ -0.46
PTPRK-220ENST00000531466 LINC00528Q8N1L1 170 aa12.19□□□□□ -0.46
PTPRK-220ENST00000531466 MEIOBQ8N635 442 aa12.19□□□□□ -0.46
PTPRK-220ENST00000531466 CARD14Q9BXL6 1004 aa12.19□□□□□ -0.46
PTPRK-220ENST00000531466 MAP4K5Q9Y4K4 846 aa12.17□□□□□ -0.46
PTPRK-220ENST00000531466 VSIG8P0DPA2 414 aa12.15□□□□□ -0.46
PTPRK-220ENST00000531466 TRMT44Q8IYL2 757 aaKnown RBP12.15□□□□□ -0.46
PTPRK-220ENST00000531466 DNMT3LQ9UJW3 386 aa12.14□□□□□ -0.47
PTPRK-220ENST00000531466 CTDSPL2Q05D32 466 aa12.13□□□□□ -0.47
PTPRK-220ENST00000531466 RSPH6AQ9H0K4 717 aa12.13□□□□□ -0.47
PTPRK-220ENST00000531466 SOS2Q07890 1332 aaPredicted RBP12.12□□□□□ -0.47
PTPRK-220ENST00000531466 PPFIA3O75145 1194 aa12.12□□□□□ -0.47
PTPRK-220ENST00000531466 ERFEQ4G0M1 354 aa12.12□□□□□ -0.47
PTPRK-220ENST00000531466 CCDC116Q8IYX3 515 aa12.12□□□□□ -0.47
PTPRK-220ENST00000531466 EMILIN1Q9Y6C2 1016 aa12.12□□□□□ -0.47
PTPRK-220ENST00000531466 LRRN4Q8WUT4 740 aa12.1□□□□□ -0.47
PTPRK-220ENST00000531466 GPKOWQ92917 476 aaPredicted RBP eCLIP12.1□□□□□ -0.47
PTPRK-220ENST00000531466 TSEN34Q9BSV6 310 aaKnown RBP12.1□□□□□ -0.47
PTPRK-220ENST00000531466 PPP1R26Q5T8A7 1209 aaPredicted RBP12.08□□□□□ -0.48
PTPRK-220ENST00000531466 CBLBQ13191 982 aa12.07□□□□□ -0.48
PTPRK-220ENST00000531466 ARHGAP9Q9BRR9 750 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms