RNA–Protein interactions for RNA: ENST00000530567.1

CAPN1-220, Transcript of calpain 1, humanhuman

TSL 2

Gene CAPN1, Length 1,415 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-220ENST00000530567 COL22A1Q8NFW1 1626 aaPredicted RBP29.65■■■□□ 2.34
CAPN1-220ENST00000530567 BRD4O60885 1362 aaPredicted RBP29.64■■■□□ 2.34
CAPN1-220ENST00000530567 KTN1Q86UP2 1357 aaKnown RBP29.64■■■□□ 2.34
CAPN1-220ENST00000530567 POLR3GLQ9BT43 218 aa29.64■■■□□ 2.34
CAPN1-220ENST00000530567 ZNF692Q9BU19 519 aaPredicted RBP29.64■■■□□ 2.34
CAPN1-220ENST00000530567 CCDC7Q96M83 1385 aa29.64■■■□□ 2.33
CAPN1-220ENST00000530567 WASHC2AQ641Q2 1341 aa29.63■■■□□ 2.33
CAPN1-220ENST00000530567 TERF2IPQ9NYB0 399 aa29.62■■■□□ 2.33
CAPN1-220ENST00000530567 HDGFL2Q7Z4V5 671 aaPredicted RBP29.61■■■□□ 2.33
CAPN1-220ENST00000530567 ARHGEF10O15013 1369 aa29.59■■■□□ 2.33
CAPN1-220ENST00000530567 PAK3O75914 559 aaPredicted RBP29.59■■■□□ 2.33
CAPN1-220ENST00000530567 EDC4Q6P2E9 1401 aaKnown RBP29.59■■■□□ 2.33
CAPN1-220ENST00000530567 PIK3C2AO00443 1686 aa29.59■■■□□ 2.33
CAPN1-220ENST00000530567 TTC21BQ7Z4L5 1316 aa29.57■■■□□ 2.32
CAPN1-220ENST00000530567 MED1Q15648 1581 aaPredicted RBP29.57■■■□□ 2.32
CAPN1-220ENST00000530567 CRYBG1Q9Y4K1 1723 aa29.55■■■□□ 2.32
CAPN1-220ENST00000530567 ABCA3Q99758 1704 aa29.55■■■□□ 2.32
CAPN1-220ENST00000530567 LRP6O75581 1613 aa29.54■■■□□ 2.32
CAPN1-220ENST00000530567 SPATA31A6Q5VVP1 1343 aa29.54■■■□□ 2.32
CAPN1-220ENST00000530567 LMOD2Q6P5Q4 547 aa29.54■■■□□ 2.32
CAPN1-220ENST00000530567 CARD14Q9BXL6 1004 aa29.54■■■□□ 2.32
CAPN1-220ENST00000530567 TTC21AQ8NDW8 1320 aa29.53■■■□□ 2.32
CAPN1-220ENST00000530567 MARF1Q9Y4F3 1742 aaKnown RBP29.52■■■□□ 2.32
CAPN1-220ENST00000530567 NSD3Q9BZ95 1437 aa29.5■■■□□ 2.31
CAPN1-220ENST00000530567 SUGP2Q8IX01 1082 aaKnown RBP eCLIP29.5■■■□□ 2.31
CAPN1-220ENST00000530567 ABTB2Q8N961 1025 aa29.5■■■□□ 2.31
CAPN1-220ENST00000530567 NUTM2GQ5VZR2 741 aa29.49■■■□□ 2.31
CAPN1-220ENST00000530567 USP54Q70EL1 1684 aa29.49■■■□□ 2.31
CAPN1-220ENST00000530567 PHRF1Q9P1Y6 1649 aaKnown RBP29.49■■■□□ 2.31
CAPN1-220ENST00000530567 PANK3Q9H999 370 aa29.48■■■□□ 2.31
CAPN1-220ENST00000530567 NME9Q86XW9 330 aa29.47■■■□□ 2.31
CAPN1-220ENST00000530567 CABLES1Q8TDN4 633 aa29.47■■■□□ 2.31
CAPN1-220ENST00000530567 USP19O94966 1318 aa29.47■■■□□ 2.31
CAPN1-220ENST00000530567 USP31Q70CQ4 1352 aa29.45■■■□□ 2.31
CAPN1-220ENST00000530567 ZRANB1Q9UGI0 708 aa29.45■■■□□ 2.3
CAPN1-220ENST00000530567 SLIT3O75094 1523 aa29.44■■■□□ 2.3
CAPN1-220ENST00000530567 NUTM2BA6NNL0 878 aaPredicted RBP29.44■■■□□ 2.3
CAPN1-220ENST00000530567 NUTM2EB1AL46 878 aaPredicted RBP29.44■■■□□ 2.3
CAPN1-220ENST00000530567 NUTM2AQ8IVF1 878 aaPredicted RBP29.44■■■□□ 2.3
CAPN1-220ENST00000530567 KIF20BQ96Q89 1820 aa29.43■■■□□ 2.3
CAPN1-220ENST00000530567 OVOS2A0A0J9YW53 1432 aa29.43■■■□□ 2.3
CAPN1-220ENST00000530567 OVOS2Q6IE36 1432 aa29.43■■■□□ 2.3
CAPN1-220ENST00000530567 PLEKHG5O94827 1062 aa29.43■■■□□ 2.3
CAPN1-220ENST00000530567 NLRP6P59044 892 aa29.43■■■□□ 2.3
CAPN1-220ENST00000530567 NLRP13Q86W25 1043 aa29.42■■■□□ 2.3
CAPN1-220ENST00000530567 FYB1O15117 783 aa29.39■■■□□ 2.3
CAPN1-220ENST00000530567 PER1O15534 1290 aaPredicted RBP29.36■■■□□ 2.29
CAPN1-220ENST00000530567 ADAMTS2O95450 1211 aa29.36■■■□□ 2.29
CAPN1-220ENST00000530567 NFAT5O94916 1531 aa29.35■■■□□ 2.29
CAPN1-220ENST00000530567 CGNL1Q0VF96 1302 aa29.34■■■□□ 2.29
CAPN1-220ENST00000530567 GCP02774 474 aa29.34■■■□□ 2.29
CAPN1-220ENST00000530567 GGNBP2Q9H3C7 697 aa29.34■■■□□ 2.29
CAPN1-220ENST00000530567 HAP1P54257 671 aaPredicted RBP29.33■■■□□ 2.29
CAPN1-220ENST00000530567 ANKRD26Q9UPS8 1709 aa29.32■■■□□ 2.28
CAPN1-220ENST00000530567 ZNF316A6NFI3 1004 aaPredicted RBP29.3■■■□□ 2.28
CAPN1-220ENST00000530567 CPDO75976 1380 aa29.3■■■□□ 2.28
CAPN1-220ENST00000530567 KIAA0232Q92628 1395 aa29.3■■■□□ 2.28
CAPN1-220ENST00000530567 AMER1Q5JTC6 1135 aaPredicted RBP29.29■■■□□ 2.28
CAPN1-220ENST00000530567 MEX3CQ5U5Q3 659 aaKnown RBP29.29■■■□□ 2.28
CAPN1-220ENST00000530567 COG3Q96JB2 828 aa29.29■■■□□ 2.28
CAPN1-220ENST00000530567 KNSTRNQ9Y448 316 aa29.29■■■□□ 2.28
CAPN1-220ENST00000530567 NSD2O96028 1365 aa29.27■■■□□ 2.28
CAPN1-220ENST00000530567 ZC3H6P61129 1189 aaKnown RBP29.27■■■□□ 2.28
CAPN1-220ENST00000530567 KCNH5Q8NCM2 988 aa29.27■■■□□ 2.28
CAPN1-220ENST00000530567 C8orf37Q96NL8 207 aa29.27■■■□□ 2.28
CAPN1-220ENST00000530567 PLCH1Q4KWH8 1693 aa29.26■■■□□ 2.27
CAPN1-220ENST00000530567 SOX12O15370 315 aa29.26■■■□□ 2.27
CAPN1-220ENST00000530567 COL14A1Q05707 1796 aaKnown RBP29.26■■■□□ 2.27
CAPN1-220ENST00000530567 FAM83GA6ND36 823 aa29.25■■■□□ 2.27
CAPN1-220ENST00000530567 SLIT2O94813 1529 aa29.24■■■□□ 2.27
CAPN1-220ENST00000530567 LMO7Q8WWI1 1683 aa29.23■■■□□ 2.27
CAPN1-220ENST00000530567 PRDM11Q9NQV5 511 aa29.23■■■□□ 2.27
CAPN1-220ENST00000530567 DDX10Q13206 875 aaKnown RBP29.22■■■□□ 2.27
CAPN1-220ENST00000530567 ARHGEF25Q86VW2 580 aa29.22■■■□□ 2.27
CAPN1-220ENST00000530567 COL18A1P39060 1754 aa29.22■■■□□ 2.27
CAPN1-220ENST00000530567 FNBP4Q8N3X1 1017 aaPredicted RBP29.21■■■□□ 2.27
CAPN1-220ENST00000530567 NGLY1Q96IV0 654 aa29.21■■■□□ 2.27
CAPN1-220ENST00000530567 NPC1L1Q9UHC9 1359 aa29.21■■■□□ 2.27
CAPN1-220ENST00000530567 LTN1O94822 1766 aa29.21■■■□□ 2.27
CAPN1-220ENST00000530567 AFF2P51816 1311 aa29.2■■■□□ 2.27
CAPN1-220ENST00000530567 CHRNA2Q15822 529 aa29.2■■■□□ 2.27
CAPN1-220ENST00000530567 NWD2Q9ULI1 1742 aa29.2■■■□□ 2.27
CAPN1-220ENST00000530567 FBLN1P23142 703 aa29.2■■■□□ 2.26
CAPN1-220ENST00000530567 RGS17Q9UGC6 210 aaPredicted RBP29.19■■■□□ 2.26
CAPN1-220ENST00000530567 NRAPQ86VF7 1730 aa29.18■■■□□ 2.26
CAPN1-220ENST00000530567 BCL9LQ86UU0 1499 aa29.18■■■□□ 2.26
CAPN1-220ENST00000530567 AATKQ6ZMQ8 1374 aa29.17■■■□□ 2.26
CAPN1-220ENST00000530567 CAMTA1Q9Y6Y1 1673 aa29.17■■■□□ 2.26
CAPN1-220ENST00000530567 TNKS1BP1Q9C0C2 1729 aaKnown RBP29.16■■■□□ 2.26
CAPN1-220ENST00000530567 ABCC6O95255 1503 aa29.16■■■□□ 2.26
CAPN1-220ENST00000530567 MAP3K19Q56UN5 1328 aa29.14■■■□□ 2.26
CAPN1-220ENST00000530567 CC2D1BQ5T0F9 858 aaKnown RBP29.14■■■□□ 2.26
CAPN1-220ENST00000530567 PHF23Q9BUL5 403 aaPredicted RBP29.13■■■□□ 2.25
CAPN1-220ENST00000530567 ZBTB7CA1YPR0 619 aa29.12■■■□□ 2.25
CAPN1-220ENST00000530567 RRS1Q15050 365 aaKnown RBP29.12■■■□□ 2.25
CAPN1-220ENST00000530567 BTG4Q9NY30 223 aa29.12■■■□□ 2.25
CAPN1-220ENST00000530567 PEAK1Q9H792 1746 aa29.12■■■□□ 2.25
CAPN1-220ENST00000530567 MORC1Q86VD1 984 aa29.11■■■□□ 2.25
CAPN1-220ENST00000530567 USP21Q9UK80 565 aa29.11■■■□□ 2.25
CAPN1-220ENST00000530567 RGPD5Q99666 1765 aa29.11■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms