RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 NBPF8Q3BBV2 869 aa18.73■□□□□ 0.59
CPSF1-204ENST00000529288 KRT27Q7Z3Y8 459 aa18.73■□□□□ 0.59
CPSF1-204ENST00000529288 CCDC61Q9Y6R9 512 aa18.73■□□□□ 0.59
CPSF1-204ENST00000529288 ATP7BP35670 1465 aa18.72■□□□□ 0.59
CPSF1-204ENST00000529288 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.72■□□□□ 0.59
CPSF1-204ENST00000529288 ZC3H6P61129 1189 aaKnown RBP18.72■□□□□ 0.59
CPSF1-204ENST00000529288 CHRNA2Q15822 529 aa18.72■□□□□ 0.59
CPSF1-204ENST00000529288 L3MBTL2Q969R5 705 aa18.72■□□□□ 0.59
CPSF1-204ENST00000529288 CENPJQ9HC77 1338 aaPredicted RBP18.72■□□□□ 0.59
CPSF1-204ENST00000529288 ARHGEF28Q8N1W1 1705 aaKnown RBP18.71■□□□□ 0.59
CPSF1-204ENST00000529288 CABP2Q9NPB3 220 aa18.71■□□□□ 0.59
CPSF1-204ENST00000529288 TRPM3Q9HCF6 1732 aaPredicted RBP18.71■□□□□ 0.59
CPSF1-204ENST00000529288 PLCH1Q4KWH8 1693 aa18.7■□□□□ 0.58
CPSF1-204ENST00000529288 ONECUT3O60422 494 aaPredicted RBP18.7■□□□□ 0.58
CPSF1-204ENST00000529288 DEFB132Q7Z7B7 95 aa18.7■□□□□ 0.58
CPSF1-204ENST00000529288 STRN4Q9NRL3 753 aa18.7■□□□□ 0.58
CPSF1-204ENST00000529288 ABTB2Q8N961 1025 aa18.69■□□□□ 0.58
CPSF1-204ENST00000529288 ABCA3Q99758 1704 aa18.69■□□□□ 0.58
CPSF1-204ENST00000529288 PLEKHG3A1L390 1219 aa18.68■□□□□ 0.58
CPSF1-204ENST00000529288 KIAA0232Q92628 1395 aa18.68■□□□□ 0.58
CPSF1-204ENST00000529288 BLMP54132 1417 aaPredicted RBP18.67■□□□□ 0.58
CPSF1-204ENST00000529288 ALS2Q96Q42 1657 aa18.66■□□□□ 0.58
CPSF1-204ENST00000529288 NWD2Q9ULI1 1742 aa18.66■□□□□ 0.58
CPSF1-204ENST00000529288 EVA1CP58658 441 aa18.66■□□□□ 0.58
CPSF1-204ENST00000529288 FAM182BQ5T319 152 aa18.66■□□□□ 0.58
CPSF1-204ENST00000529288 ZBTB7CA1YPR0 619 aa18.65■□□□□ 0.58
CPSF1-204ENST00000529288 USP35Q9P2H5 1018 aa18.65■□□□□ 0.58
CPSF1-204ENST00000529288 SPATA31A5Q5VU36 1347 aa18.65■□□□□ 0.58
CPSF1-204ENST00000529288 SPATA31A7Q8IWB4 1347 aa18.65■□□□□ 0.58
CPSF1-204ENST00000529288 POLR3AO14802 1390 aaPredicted RBP18.65■□□□□ 0.58
CPSF1-204ENST00000529288 PPIP5K1Q6PFW1 1433 aa18.65■□□□□ 0.58
CPSF1-204ENST00000529288 CABP1Q9NZU7 370 aa18.64■□□□□ 0.57
CPSF1-204ENST00000529288 ITSN1Q15811 1721 aa18.63■□□□□ 0.57
CPSF1-204ENST00000529288 KIAA1210Q9ULL0 1709 aa18.63■□□□□ 0.57
CPSF1-204ENST00000529288 EP400Q96L91 3159 aa18.63■□□□□ 0.57
CPSF1-204ENST00000529288 COL14A1Q05707 1796 aaKnown RBP18.63■□□□□ 0.57
CPSF1-204ENST00000529288 NLRP13Q86W25 1043 aa18.62■□□□□ 0.57
CPSF1-204ENST00000529288 BRWD3Q6RI45 1802 aa18.61■□□□□ 0.57
CPSF1-204ENST00000529288 ROCK2O75116 1388 aaKnown RBP18.6■□□□□ 0.57
CPSF1-204ENST00000529288 SPATA31A1Q5TZJ5 1347 aa18.6■□□□□ 0.57
CPSF1-204ENST00000529288 BAG6P46379 1132 aa18.6■□□□□ 0.57
CPSF1-204ENST00000529288 NRAPQ86VF7 1730 aa18.6■□□□□ 0.57
CPSF1-204ENST00000529288 EVC2Q86UK5 1308 aa18.59■□□□□ 0.57
CPSF1-204ENST00000529288 GCP02774 474 aa18.58■□□□□ 0.56
CPSF1-204ENST00000529288 NLRP6P59044 892 aa18.58■□□□□ 0.56
CPSF1-204ENST00000529288 LARP1Q6PKG0 1096 aaKnown RBP18.57■□□□□ 0.56
CPSF1-204ENST00000529288 EN1Q05925 392 aaPredicted RBP18.56■□□□□ 0.56
CPSF1-204ENST00000529288 TOPAZ1Q8N9V7 1692 aa18.56■□□□□ 0.56
CPSF1-204ENST00000529288 CRYBG1Q9Y4K1 1723 aa18.54■□□□□ 0.56
CPSF1-204ENST00000529288 USP19O94966 1318 aa18.54■□□□□ 0.56
CPSF1-204ENST00000529288 PHRF1Q9P1Y6 1649 aaKnown RBP18.54■□□□□ 0.56
CPSF1-204ENST00000529288 PDE3BQ13370 1112 aa18.54■□□□□ 0.56
CPSF1-204ENST00000529288 QRICH2Q9H0J4 1663 aa18.54■□□□□ 0.56
CPSF1-204ENST00000529288 PSDA5PKW4 1024 aaPredicted RBP18.53■□□□□ 0.56
CPSF1-204ENST00000529288 SOX12O15370 315 aa18.53■□□□□ 0.56
CPSF1-204ENST00000529288 SSH2Q76I76 1423 aa18.53■□□□□ 0.56
CPSF1-204ENST00000529288 USP6P35125 1406 aa18.52■□□□□ 0.56
CPSF1-204ENST00000529288 TRIM37O94972 964 aa18.52■□□□□ 0.56
CPSF1-204ENST00000529288 TCP11L2Q8N4U5 519 aa18.52■□□□□ 0.56
CPSF1-204ENST00000529288 CPDO75976 1380 aa18.52■□□□□ 0.55
CPSF1-204ENST00000529288 FAM196AQ6ZSG2 479 aa18.51■□□□□ 0.55
CPSF1-204ENST00000529288 CARD11Q9BXL7 1154 aa18.51■□□□□ 0.55
CPSF1-204ENST00000529288 CAMTA1Q9Y6Y1 1673 aa18.5■□□□□ 0.55
CPSF1-204ENST00000529288 BARGINQ6ZT62 677 aa18.5■□□□□ 0.55
CPSF1-204ENST00000529288 BRD4O60885 1362 aaPredicted RBP18.5■□□□□ 0.55
CPSF1-204ENST00000529288 NRKQ7Z2Y5 1582 aa18.5■□□□□ 0.55
CPSF1-204ENST00000529288 TRPM1Q7Z4N2 1603 aa18.49■□□□□ 0.55
CPSF1-204ENST00000529288 ZNF692Q9BU19 519 aaPredicted RBP18.49■□□□□ 0.55
CPSF1-204ENST00000529288 APBA3O96018 575 aa18.48■□□□□ 0.55
CPSF1-204ENST00000529288 EZH2Q15910 746 aaKnown RBP18.48■□□□□ 0.55
CPSF1-204ENST00000529288 TTC21BQ7Z4L5 1316 aa18.48■□□□□ 0.55
CPSF1-204ENST00000529288 TONSLQ96HA7 1378 aa18.47■□□□□ 0.55
CPSF1-204ENST00000529288 TOM1L2Q6ZVM7 507 aa18.47■□□□□ 0.55
CPSF1-204ENST00000529288 TMC1Q8TDI8 760 aa18.47■□□□□ 0.55
CPSF1-204ENST00000529288 SRCAPQ6ZRS2 3230 aa18.47■□□□□ 0.55
CPSF1-204ENST00000529288 THSD7AQ9UPZ6 1657 aa18.47■□□□□ 0.55
CPSF1-204ENST00000529288 THRAP3Q9Y2W1 955 aaKnown RBP18.46■□□□□ 0.55
CPSF1-204ENST00000529288 R3HDM1Q15032 1099 aaKnown RBP18.45■□□□□ 0.54
CPSF1-204ENST00000529288 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.45■□□□□ 0.54
CPSF1-204ENST00000529288 KTN1Q86UP2 1357 aaKnown RBP18.44■□□□□ 0.54
CPSF1-204ENST00000529288 CSB-PGBD3P0DP91 1061 aa18.44■□□□□ 0.54
CPSF1-204ENST00000529288 COL5A2P05997 1499 aaPredicted RBP18.44■□□□□ 0.54
CPSF1-204ENST00000529288 AATKQ6ZMQ8 1374 aa18.43■□□□□ 0.54
CPSF1-204ENST00000529288 KCNH5Q8NCM2 988 aa18.43■□□□□ 0.54
CPSF1-204ENST00000529288 AXIN2Q9Y2T1 843 aa18.43■□□□□ 0.54
CPSF1-204ENST00000529288 CRB1P82279 1406 aa18.42■□□□□ 0.54
CPSF1-204ENST00000529288 TTC21AQ8NDW8 1320 aa18.42■□□□□ 0.54
CPSF1-204ENST00000529288 CAMKK2Q96RR4 588 aa18.41■□□□□ 0.54
CPSF1-204ENST00000529288 LMO7Q8WWI1 1683 aa18.41■□□□□ 0.54
CPSF1-204ENST00000529288 DDB1Q16531 1140 aa18.4■□□□□ 0.54
CPSF1-204ENST00000529288 ARHGEF25Q86VW2 580 aa18.4■□□□□ 0.54
CPSF1-204ENST00000529288 RGPD1P0DJD0 1748 aa18.4■□□□□ 0.54
CPSF1-204ENST00000529288 SLIT3O75094 1523 aa18.39■□□□□ 0.54
CPSF1-204ENST00000529288 HDGFL2Q7Z4V5 671 aaPredicted RBP18.39■□□□□ 0.53
CPSF1-204ENST00000529288 SLC12A5Q9H2X9 1139 aa18.39■□□□□ 0.53
CPSF1-204ENST00000529288 TRIM26Q12899 539 aaPredicted RBP18.38■□□□□ 0.53
CPSF1-204ENST00000529288 NME9Q86XW9 330 aa18.38■□□□□ 0.53
CPSF1-204ENST00000529288 WDR17Q8IZU2 1322 aa18.38■□□□□ 0.53
CPSF1-204ENST00000529288 PIK3C2AO00443 1686 aa18.38■□□□□ 0.53
CPSF1-204ENST00000529288 DISP2A7MBM2 1401 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 158.7 ms