RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 DCCP43146 1447 aa28.21■■■□□ 2.11
VPS28-208ENST00000527797 ANKRD26Q9UPS8 1709 aa28.21■■■□□ 2.11
VPS28-208ENST00000527797 SSH2Q76I76 1423 aa28.2■■■□□ 2.1
VPS28-208ENST00000527797 TTC21AQ8NDW8 1320 aa28.2■■■□□ 2.1
VPS28-208ENST00000527797 HNRNPUQ00839 825 aaKnown RBP eCLIP28.2■■■□□ 2.1
VPS28-208ENST00000527797 COG3Q96JB2 828 aa28.2■■■□□ 2.1
VPS28-208ENST00000527797 MSH6P52701 1360 aa28.19■■■□□ 2.1
VPS28-208ENST00000527797 MTHFSP49914 203 aa28.18■■■□□ 2.1
VPS28-208ENST00000527797 NRKQ7Z2Y5 1582 aa28.18■■■□□ 2.1
VPS28-208ENST00000527797 CADPS2Q86UW7 1296 aa28.18■■■□□ 2.1
VPS28-208ENST00000527797 SCAF1Q9H7N4 1312 aaKnown RBP28.17■■■□□ 2.1
VPS28-208ENST00000527797 LRRC7Q96NW7 1537 aa28.17■■■□□ 2.1
VPS28-208ENST00000527797 C1orf167Q5SNV9 1468 aa28.16■■■□□ 2.1
VPS28-208ENST00000527797 CFAP53Q96M91 514 aa28.16■■■□□ 2.1
VPS28-208ENST00000527797 ZRANB1Q9UGI0 708 aa28.16■■■□□ 2.1
VPS28-208ENST00000527797 WDR43Q15061 677 aaKnown RBP eCLIP28.15■■■□□ 2.1
VPS28-208ENST00000527797 ORAI2Q96SN7 254 aa28.14■■■□□ 2.1
VPS28-208ENST00000527797 MST1RQ04912 1400 aa28.12■■■□□ 2.09
VPS28-208ENST00000527797 PSME1Q06323 249 aa28.11■■■□□ 2.09
VPS28-208ENST00000527797 INSRP06213 1382 aa28.11■■■□□ 2.09
VPS28-208ENST00000527797 ADAMTS8Q9UP79 889 aa28.09■■■□□ 2.09
VPS28-208ENST00000527797 AATKQ6ZMQ8 1374 aa28.08■■■□□ 2.09
VPS28-208ENST00000527797 OVOS2A0A0J9YW53 1432 aa28.07■■■□□ 2.08
VPS28-208ENST00000527797 OVOS2Q6IE36 1432 aa28.07■■■□□ 2.08
VPS28-208ENST00000527797 USP31Q70CQ4 1352 aa28.07■■■□□ 2.08
VPS28-208ENST00000527797 PAK3O75914 559 aaPredicted RBP28.07■■■□□ 2.08
VPS28-208ENST00000527797 FOXO3O43524 673 aa28.06■■■□□ 2.08
VPS28-208ENST00000527797 POLKQ9UBT6 870 aa28.06■■■□□ 2.08
VPS28-208ENST00000527797 XIRP1Q702N8 1843 aaKnown RBP28.05■■■□□ 2.08
VPS28-208ENST00000527797 KIF1AQ12756 1690 aa28.03■■■□□ 2.08
VPS28-208ENST00000527797 FBLN1P23142 703 aa28.03■■■□□ 2.08
VPS28-208ENST00000527797 ABTB2Q8N961 1025 aa28.03■■■□□ 2.08
VPS28-208ENST00000527797 NLRP6P59044 892 aa28.03■■■□□ 2.08
VPS28-208ENST00000527797 ZBED9Q6R2W3 1325 aa28.02■■■□□ 2.08
VPS28-208ENST00000527797 BLMP54132 1417 aaPredicted RBP28.02■■■□□ 2.08
VPS28-208ENST00000527797 PNPLA6Q8IY17 1366 aa28■■■□□ 2.07
VPS28-208ENST00000527797 PPM1GO15355 546 aaPredicted RBP28■■■□□ 2.07
VPS28-208ENST00000527797 KRT28Q7Z3Y7 464 aa28■■■□□ 2.07
VPS28-208ENST00000527797 NUDCQ9Y266 331 aa27.99■■■□□ 2.07
VPS28-208ENST00000527797 EMILIN1Q9Y6C2 1016 aa27.99■■■□□ 2.07
VPS28-208ENST00000527797 SMG6Q86US8 1419 aaKnown RBP27.98■■■□□ 2.07
VPS28-208ENST00000527797 PIK3C2AO00443 1686 aa27.98■■■□□ 2.07
VPS28-208ENST00000527797 XPCQ01831 940 aaPredicted RBP27.97■■■□□ 2.07
VPS28-208ENST00000527797 RRS1Q15050 365 aaKnown RBP27.97■■■□□ 2.07
VPS28-208ENST00000527797 DIAPH1O60610 1272 aaKnown RBP27.96■■■□□ 2.07
VPS28-208ENST00000527797 NUTM2GQ5VZR2 741 aa27.96■■■□□ 2.07
VPS28-208ENST00000527797 SLAIN2Q9P270 581 aa27.96■■■□□ 2.07
VPS28-208ENST00000527797 COL3A1P02461 1466 aaPredicted RBP27.96■■■□□ 2.07
VPS28-208ENST00000527797 NPHP3Q7Z494 1330 aa27.94■■■□□ 2.06
VPS28-208ENST00000527797 SHPRHQ149N8 1683 aa27.94■■■□□ 2.06
VPS28-208ENST00000527797 AEBP2Q6ZN18 517 aaPredicted RBP27.93■■■□□ 2.06
VPS28-208ENST00000527797 CDK12Q9NYV4 1490 aaPredicted RBP27.93■■■□□ 2.06
VPS28-208ENST00000527797 SOX12O15370 315 aa27.92■■■□□ 2.06
VPS28-208ENST00000527797 MAP2P11137 1827 aaKnown RBP27.92■■■□□ 2.06
VPS28-208ENST00000527797 U2AF1L5P0DN76 240 aaPredicted RBP27.92■■■□□ 2.06
VPS28-208ENST00000527797 U2AF1Q01081 240 aaKnown RBP eCLIP27.92■■■□□ 2.06
VPS28-208ENST00000527797 BRINP3Q76B58 766 aa27.92■■■□□ 2.06
VPS28-208ENST00000527797 USP54Q70EL1 1684 aa27.91■■■□□ 2.06
VPS28-208ENST00000527797 SENP3-EIF4A1A0A087X0R7 540 aa27.9■■■□□ 2.06
VPS28-208ENST00000527797 U2SURPO15042 1029 aaKnown RBP27.9■■■□□ 2.06
VPS28-208ENST00000527797 CCDC146Q8IYE0 955 aa27.89■■■□□ 2.06
VPS28-208ENST00000527797 LTBP4Q8N2S1 1624 aa27.88■■■□□ 2.05
VPS28-208ENST00000527797 LMOD2Q6P5Q4 547 aa27.88■■■□□ 2.05
VPS28-208ENST00000527797 DDX17Q92841 729 aaKnown RBP27.88■■■□□ 2.05
VPS28-208ENST00000527797 SBNO1A3KN83 1393 aa27.87■■■□□ 2.05
VPS28-208ENST00000527797 MAP3K19Q56UN5 1328 aa27.87■■■□□ 2.05
VPS28-208ENST00000527797 TRPM3Q9HCF6 1732 aaPredicted RBP27.87■■■□□ 2.05
VPS28-208ENST00000527797 KCNH5Q8NCM2 988 aa27.86■■■□□ 2.05
VPS28-208ENST00000527797 RUNDC1Q96C34 613 aa27.85■■■□□ 2.05
VPS28-208ENST00000527797 IL13P35225 146 aa27.85■■■□□ 2.05
VPS28-208ENST00000527797 SALL2Q9Y467 1007 aaPredicted RBP27.85■■■□□ 2.05
VPS28-208ENST00000527797 MARF1Q9Y4F3 1742 aaKnown RBP27.84■■■□□ 2.05
VPS28-208ENST00000527797 AMPHP49418 695 aa27.83■■■□□ 2.05
VPS28-208ENST00000527797 APAF1O14727 1248 aa27.81■■■□□ 2.04
VPS28-208ENST00000527797 PNNQ9H307 717 aaKnown RBP27.81■■■□□ 2.04
VPS28-208ENST00000527797 FLT4P35916 1363 aa27.81■■■□□ 2.04
VPS28-208ENST00000527797 KIF24Q5T7B8 1368 aa27.81■■■□□ 2.04
VPS28-208ENST00000527797 PXDNQ92626 1479 aa27.81■■■□□ 2.04
VPS28-208ENST00000527797 USP19O94966 1318 aa27.8■■■□□ 2.04
VPS28-208ENST00000527797 HSP90AB2PQ58FF8 381 aa27.8■■■□□ 2.04
VPS28-208ENST00000527797 NGEFQ8N5V2 710 aa27.8■■■□□ 2.04
VPS28-208ENST00000527797 TNS3Q68CZ2 1445 aa27.79■■■□□ 2.04
VPS28-208ENST00000527797 FCHSD2O94868 740 aa27.78■■■□□ 2.04
VPS28-208ENST00000527797 SPATA31A3Q5VYP0 1347 aa27.78■■■□□ 2.04
VPS28-208ENST00000527797 GCP02774 474 aa27.78■■■□□ 2.04
VPS28-208ENST00000527797 PDE3BQ13370 1112 aa27.78■■■□□ 2.04
VPS28-208ENST00000527797 EIF4A2Q14240 407 aaKnown RBP27.78■■■□□ 2.04
VPS28-208ENST00000527797 PEAK1Q9H792 1746 aa27.77■■■□□ 2.04
VPS28-208ENST00000527797 SLIT3O75094 1523 aa27.77■■■□□ 2.04
VPS28-208ENST00000527797 SOS2Q07890 1332 aaPredicted RBP27.76■■■□□ 2.03
VPS28-208ENST00000527797 ALS2Q96Q42 1657 aa27.76■■■□□ 2.03
VPS28-208ENST00000527797 NFAT5O94916 1531 aa27.75■■■□□ 2.03
VPS28-208ENST00000527797 HOXC9P31274 260 aa27.75■■■□□ 2.03
VPS28-208ENST00000527797 PLEKHF1Q96S99 279 aa27.75■■■□□ 2.03
VPS28-208ENST00000527797 RTL1A6NKG5 1358 aa27.75■■■□□ 2.03
VPS28-208ENST00000527797 ARHGEF10O15013 1369 aa27.75■■■□□ 2.03
VPS28-208ENST00000527797 TCP11L2Q8N4U5 519 aa27.74■■■□□ 2.03
VPS28-208ENST00000527797 PLEKHG5O94827 1062 aa27.74■■■□□ 2.03
VPS28-208ENST00000527797 MAPK8IP3Q9UPT6 1336 aa27.72■■■□□ 2.03
VPS28-208ENST00000527797 RSPH6AQ9H0K4 717 aa27.72■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 95.3 ms