RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 SLIT2O94813 1529 aa29.34■■■□□ 2.29
VPS28-206ENST00000526734 BRD4O60885 1362 aaPredicted RBP29.33■■■□□ 2.29
VPS28-206ENST00000526734 PPIP5K1Q6PFW1 1433 aa29.33■■■□□ 2.29
VPS28-206ENST00000526734 PAK3O75914 559 aaPredicted RBP29.32■■■□□ 2.28
VPS28-206ENST00000526734 TNKS1BP1Q9C0C2 1729 aaKnown RBP29.31■■■□□ 2.28
VPS28-206ENST00000526734 CABLES1Q8TDN4 633 aa29.31■■■□□ 2.28
VPS28-206ENST00000526734 CABP2Q9NPB3 220 aa29.31■■■□□ 2.28
VPS28-206ENST00000526734 RGS12O14924 1447 aa29.28■■■□□ 2.28
VPS28-206ENST00000526734 UNC5CLQ8IV45 518 aa29.28■■■□□ 2.28
VPS28-206ENST00000526734 TIMELESSQ9UNS1 1208 aa29.26■■■□□ 2.27
VPS28-206ENST00000526734 ATAD2Q6PL18 1390 aa29.26■■■□□ 2.27
VPS28-206ENST00000526734 NWD2Q9ULI1 1742 aa29.25■■■□□ 2.27
VPS28-206ENST00000526734 PLEKHG5O94827 1062 aa29.23■■■□□ 2.27
VPS28-206ENST00000526734 CRYBG1Q9Y4K1 1723 aa29.23■■■□□ 2.27
VPS28-206ENST00000526734 GJD4Q96KN9 370 aaPredicted RBP29.22■■■□□ 2.27
VPS28-206ENST00000526734 PCGF6Q9BYE7 350 aa29.22■■■□□ 2.27
VPS28-206ENST00000526734 CABP1Q9NZU7 370 aa29.22■■■□□ 2.27
VPS28-206ENST00000526734 PLCH1Q4KWH8 1693 aa29.21■■■□□ 2.27
VPS28-206ENST00000526734 USP6P35125 1406 aa29.2■■■□□ 2.26
VPS28-206ENST00000526734 COL14A1Q05707 1796 aaKnown RBP29.19■■■□□ 2.26
VPS28-206ENST00000526734 FAM83GA6ND36 823 aa29.18■■■□□ 2.26
VPS28-206ENST00000526734 SLC24A1O60721 1099 aa29.18■■■□□ 2.26
VPS28-206ENST00000526734 VPS72Q15906 364 aa29.18■■■□□ 2.26
VPS28-206ENST00000526734 ABTB2Q8N961 1025 aa29.17■■■□□ 2.26
VPS28-206ENST00000526734 ZNF692Q9BU19 519 aaPredicted RBP29.17■■■□□ 2.26
VPS28-206ENST00000526734 PHRF1Q9P1Y6 1649 aaKnown RBP29.16■■■□□ 2.26
VPS28-206ENST00000526734 NLRP13Q86W25 1043 aa29.15■■■□□ 2.26
VPS28-206ENST00000526734 USP19O94966 1318 aa29.15■■■□□ 2.26
VPS28-206ENST00000526734 PUS7Q96PZ0 661 aaKnown RBP29.14■■■□□ 2.26
VPS28-206ENST00000526734 PRDM11Q9NQV5 511 aa29.14■■■□□ 2.26
VPS28-206ENST00000526734 GLI3P10071 1580 aa29.12■■■□□ 2.25
VPS28-206ENST00000526734 SSH2Q76I76 1423 aa29.11■■■□□ 2.25
VPS28-206ENST00000526734 UPF1Q92900 1129 aaKnown RBP eCLIP29.11■■■□□ 2.25
VPS28-206ENST00000526734 BTG4Q9NY30 223 aa29.11■■■□□ 2.25
VPS28-206ENST00000526734 NUTM2GQ5VZR2 741 aa29.1■■■□□ 2.25
VPS28-206ENST00000526734 NRAPQ86VF7 1730 aa29.1■■■□□ 2.25
VPS28-206ENST00000526734 KIAA0232Q92628 1395 aa29.1■■■□□ 2.25
VPS28-206ENST00000526734 CPSF1Q10570 1443 aaKnown RBP29.1■■■□□ 2.25
VPS28-206ENST00000526734 NRKQ7Z2Y5 1582 aa29.09■■■□□ 2.25
VPS28-206ENST00000526734 CPDO75976 1380 aa29.09■■■□□ 2.25
VPS28-206ENST00000526734 TTC21AQ8NDW8 1320 aa29.07■■■□□ 2.24
VPS28-206ENST00000526734 CCDC9Q9Y3X0 531 aaKnown RBP29.07■■■□□ 2.24
VPS28-206ENST00000526734 AKAP12Q02952 1782 aa29.06■■■□□ 2.24
VPS28-206ENST00000526734 KTN1Q86UP2 1357 aaKnown RBP29.04■■■□□ 2.24
VPS28-206ENST00000526734 ST20-MTHFSA0A0A6YYL1 179 aa29.04■■■□□ 2.24
VPS28-206ENST00000526734 NLRP6P59044 892 aa29.04■■■□□ 2.24
VPS28-206ENST00000526734 ZC3H6P61129 1189 aaKnown RBP29.04■■■□□ 2.24
VPS28-206ENST00000526734 TESK2Q96S53 571 aa29.04■■■□□ 2.24
VPS28-206ENST00000526734 NINLQ9Y2I6 1382 aa29.03■■■□□ 2.24
VPS28-206ENST00000526734 TTC21BQ7Z4L5 1316 aa29.03■■■□□ 2.24
VPS28-206ENST00000526734 ONECUT3O60422 494 aaPredicted RBP29.03■■■□□ 2.24
VPS28-206ENST00000526734 GCP02774 474 aa29.03■■■□□ 2.24
VPS28-206ENST00000526734 SLIT3O75094 1523 aa29.03■■■□□ 2.24
VPS28-206ENST00000526734 USP47Q96K76 1375 aa29.02■■■□□ 2.24
VPS28-206ENST00000526734 CCER1Q8TC90 406 aaPredicted RBP29.01■■■□□ 2.23
VPS28-206ENST00000526734 PIK3C2AO00443 1686 aa29■■■□□ 2.23
VPS28-206ENST00000526734 HDGFL2Q7Z4V5 671 aaPredicted RBP29■■■□□ 2.23
VPS28-206ENST00000526734 SPATA31A5Q5VU36 1347 aa28.99■■■□□ 2.23
VPS28-206ENST00000526734 SPATA31A7Q8IWB4 1347 aa28.99■■■□□ 2.23
VPS28-206ENST00000526734 CHRNA2Q15822 529 aa28.99■■■□□ 2.23
VPS28-206ENST00000526734 MON2Q7Z3U7 1717 aa28.99■■■□□ 2.23
VPS28-206ENST00000526734 SEPT12Q8IYM1 358 aa28.98■■■□□ 2.23
VPS28-206ENST00000526734 TMC1Q8TDI8 760 aa28.98■■■□□ 2.23
VPS28-206ENST00000526734 TERF2IPQ9NYB0 399 aa28.98■■■□□ 2.23
VPS28-206ENST00000526734 CD163L1Q9NR16 1453 aa28.97■■■□□ 2.23
VPS28-206ENST00000526734 KCNH5Q8NCM2 988 aa28.96■■■□□ 2.23
VPS28-206ENST00000526734 LMO7Q8WWI1 1683 aa28.96■■■□□ 2.23
VPS28-206ENST00000526734 TMF1P82094 1093 aa28.94■■■□□ 2.22
VPS28-206ENST00000526734 EDC4Q6P2E9 1401 aaKnown RBP28.94■■■□□ 2.22
VPS28-206ENST00000526734 AATKQ6ZMQ8 1374 aa28.93■■■□□ 2.22
VPS28-206ENST00000526734 CCDC125Q86Z20 511 aa28.93■■■□□ 2.22
VPS28-206ENST00000526734 SLC12A5Q9H2X9 1139 aa28.93■■■□□ 2.22
VPS28-206ENST00000526734 USP31Q70CQ4 1352 aa28.92■■■□□ 2.22
VPS28-206ENST00000526734 EVA1CP58658 441 aa28.92■■■□□ 2.22
VPS28-206ENST00000526734 CDCA8Q53HL2 280 aa28.92■■■□□ 2.22
VPS28-206ENST00000526734 CAMTA1Q9Y6Y1 1673 aa28.92■■■□□ 2.22
VPS28-206ENST00000526734 SPATA31A1Q5TZJ5 1347 aa28.92■■■□□ 2.22
VPS28-206ENST00000526734 FAM98CQ17RN3 349 aaKnown RBP28.91■■■□□ 2.22
VPS28-206ENST00000526734 STRN4Q9NRL3 753 aa28.91■■■□□ 2.22
VPS28-206ENST00000526734 A0A0G2JS52 829 aa28.9■■■□□ 2.22
VPS28-206ENST00000526734 MYT1Q01538 1121 aa28.9■■■□□ 2.22
VPS28-206ENST00000526734 A0A1W2PP64 1363 aa28.89■■■□□ 2.22
VPS28-206ENST00000526734 KRT27Q7Z3Y8 459 aa28.89■■■□□ 2.22
VPS28-206ENST00000526734 USP54Q70EL1 1684 aa28.89■■■□□ 2.21
VPS28-206ENST00000526734 COL5A2P05997 1499 aaPredicted RBP28.87■■■□□ 2.21
VPS28-206ENST00000526734 THSD7AQ9UPZ6 1657 aa28.86■■■□□ 2.21
VPS28-206ENST00000526734 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.86■■■□□ 2.21
VPS28-206ENST00000526734 BRWD3Q6RI45 1802 aa28.85■■■□□ 2.21
VPS28-206ENST00000526734 ABCC6O95255 1503 aa28.85■■■□□ 2.21
VPS28-206ENST00000526734 BARGINQ6ZT62 677 aa28.84■■■□□ 2.21
VPS28-206ENST00000526734 ARHGEF25Q86VW2 580 aa28.84■■■□□ 2.21
VPS28-206ENST00000526734 THRAP3Q9Y2W1 955 aaKnown RBP28.84■■■□□ 2.21
VPS28-206ENST00000526734 ANKRD36BQ8N2N9 1353 aa28.84■■■□□ 2.21
VPS28-206ENST00000526734 BLMP54132 1417 aaPredicted RBP28.84■■■□□ 2.21
VPS28-206ENST00000526734 NFAT5O94916 1531 aa28.84■■■□□ 2.21
VPS28-206ENST00000526734 ZBTB7CA1YPR0 619 aa28.82■■■□□ 2.2
VPS28-206ENST00000526734 LARP1Q6PKG0 1096 aaKnown RBP28.82■■■□□ 2.2
VPS28-206ENST00000526734 CRB1P82279 1406 aa28.81■■■□□ 2.2
VPS28-206ENST00000526734 NME9Q86XW9 330 aa28.81■■■□□ 2.2
VPS28-206ENST00000526734 TCP11L2Q8N4U5 519 aa28.81■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms