RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 MARF1Q9Y4F3 1742 aaKnown RBP18.94■□□□□ 0.62
CD44-224ENST00000526669 NSD3Q9BZ95 1437 aa18.93■□□□□ 0.62
CD44-224ENST00000526669 PAK3O75914 559 aaPredicted RBP18.91■□□□□ 0.62
CD44-224ENST00000526669 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.9■□□□□ 0.62
CD44-224ENST00000526669 CARD14Q9BXL6 1004 aa18.9■□□□□ 0.62
CD44-224ENST00000526669 ABCA3Q99758 1704 aa18.9■□□□□ 0.62
CD44-224ENST00000526669 EDC4Q6P2E9 1401 aaKnown RBP18.9■□□□□ 0.62
CD44-224ENST00000526669 ZNF692Q9BU19 519 aaPredicted RBP18.89■□□□□ 0.61
CD44-224ENST00000526669 CRYBG1Q9Y4K1 1723 aa18.88■□□□□ 0.61
CD44-224ENST00000526669 LMOD2Q6P5Q4 547 aa18.88■□□□□ 0.61
CD44-224ENST00000526669 SOS2Q07890 1332 aaPredicted RBP18.88■□□□□ 0.61
CD44-224ENST00000526669 TTC21BQ7Z4L5 1316 aa18.88■□□□□ 0.61
CD44-224ENST00000526669 TNS3Q68CZ2 1445 aa18.88■□□□□ 0.61
CD44-224ENST00000526669 SSH2Q76I76 1423 aa18.88■□□□□ 0.61
CD44-224ENST00000526669 PLEKHG5O94827 1062 aa18.87■□□□□ 0.61
CD44-224ENST00000526669 SHPRHQ149N8 1683 aa18.87■□□□□ 0.61
CD44-224ENST00000526669 USP54Q70EL1 1684 aa18.87■□□□□ 0.61
CD44-224ENST00000526669 PHRF1Q9P1Y6 1649 aaKnown RBP18.87■□□□□ 0.61
CD44-224ENST00000526669 HSPA1LP34931 641 aa18.86■□□□□ 0.61
CD44-224ENST00000526669 CNGB1Q14028 1251 aaPredicted RBP18.86■□□□□ 0.61
CD44-224ENST00000526669 NUTM2GQ5VZR2 741 aa18.86■□□□□ 0.61
CD44-224ENST00000526669 FBXO41Q8TF61 875 aa18.86■□□□□ 0.61
CD44-224ENST00000526669 SBNO1A3KN83 1393 aa18.85■□□□□ 0.61
CD44-224ENST00000526669 NME9Q86XW9 330 aa18.85■□□□□ 0.61
CD44-224ENST00000526669 MAP2P11137 1827 aaKnown RBP18.85■□□□□ 0.61
CD44-224ENST00000526669 SPATA31A3Q5VYP0 1347 aa18.84■□□□□ 0.61
CD44-224ENST00000526669 ZRANB1Q9UGI0 708 aa18.84■□□□□ 0.61
CD44-224ENST00000526669 COL22A1Q8NFW1 1626 aaPredicted RBP18.83■□□□□ 0.61
CD44-224ENST00000526669 KNSTRNQ9Y448 316 aa18.83■□□□□ 0.6
CD44-224ENST00000526669 LTN1O94822 1766 aa18.83■□□□□ 0.6
CD44-224ENST00000526669 BRD4O60885 1362 aaPredicted RBP18.82■□□□□ 0.6
CD44-224ENST00000526669 TTC21AQ8NDW8 1320 aa18.82■□□□□ 0.6
CD44-224ENST00000526669 ABTB2Q8N961 1025 aa18.82■□□□□ 0.6
CD44-224ENST00000526669 MED1Q15648 1581 aaPredicted RBP18.81■□□□□ 0.6
CD44-224ENST00000526669 GGNBP2Q9H3C7 697 aa18.81■□□□□ 0.6
CD44-224ENST00000526669 PER1O15534 1290 aaPredicted RBP18.8■□□□□ 0.6
CD44-224ENST00000526669 LRRC59Q96AG4 307 aaKnown RBP18.8■□□□□ 0.6
CD44-224ENST00000526669 PNPLA6Q8IY17 1366 aa18.8■□□□□ 0.6
CD44-224ENST00000526669 CGNL1Q0VF96 1302 aa18.79■□□□□ 0.6
CD44-224ENST00000526669 NLRP6P59044 892 aa18.79■□□□□ 0.6
CD44-224ENST00000526669 ARHGEF10O15013 1369 aa18.79■□□□□ 0.6
CD44-224ENST00000526669 RGPD5Q99666 1765 aa18.78■□□□□ 0.6
CD44-224ENST00000526669 FYB1O15117 783 aa18.78■□□□□ 0.6
CD44-224ENST00000526669 CC2D1BQ5T0F9 858 aaKnown RBP18.78■□□□□ 0.6
CD44-224ENST00000526669 OVOS2A0A0J9YW53 1432 aa18.77■□□□□ 0.6
CD44-224ENST00000526669 OVOS2Q6IE36 1432 aa18.77■□□□□ 0.6
CD44-224ENST00000526669 CABLES1Q8TDN4 633 aa18.77■□□□□ 0.6
CD44-224ENST00000526669 SLIT3O75094 1523 aa18.76■□□□□ 0.59
CD44-224ENST00000526669 SOX12O15370 315 aa18.76■□□□□ 0.59
CD44-224ENST00000526669 AMER1Q5JTC6 1135 aaPredicted RBP18.76■□□□□ 0.59
CD44-224ENST00000526669 USP31Q70CQ4 1352 aa18.75■□□□□ 0.59
CD44-224ENST00000526669 JCADQ9P266 1359 aa18.75■□□□□ 0.59
CD44-224ENST00000526669 NLRP13Q86W25 1043 aa18.74■□□□□ 0.59
CD44-224ENST00000526669 COG3Q96JB2 828 aa18.74■□□□□ 0.59
CD44-224ENST00000526669 NSD2O96028 1365 aa18.73■□□□□ 0.59
CD44-224ENST00000526669 USP19O94966 1318 aa18.73■□□□□ 0.59
CD44-224ENST00000526669 NUTM2BA6NNL0 878 aaPredicted RBP18.72■□□□□ 0.59
CD44-224ENST00000526669 NUTM2EB1AL46 878 aaPredicted RBP18.72■□□□□ 0.59
CD44-224ENST00000526669 TNNT2P45379 298 aaPredicted RBP18.72■□□□□ 0.59
CD44-224ENST00000526669 NUTM2AQ8IVF1 878 aaPredicted RBP18.72■□□□□ 0.59
CD44-224ENST00000526669 NFAT5O94916 1531 aa18.72■□□□□ 0.59
CD44-224ENST00000526669 FBLN1P23142 703 aa18.71■□□□□ 0.59
CD44-224ENST00000526669 HAP1P54257 671 aaPredicted RBP18.71■□□□□ 0.59
CD44-224ENST00000526669 ZBTB7CA1YPR0 619 aa18.7■□□□□ 0.58
CD44-224ENST00000526669 MORC1Q86VD1 984 aa18.7■□□□□ 0.58
CD44-224ENST00000526669 PLCH1Q4KWH8 1693 aa18.69■□□□□ 0.58
CD44-224ENST00000526669 NPC1L1Q9UHC9 1359 aa18.69■□□□□ 0.58
CD44-224ENST00000526669 PEAK1Q9H792 1746 aa18.69■□□□□ 0.58
CD44-224ENST00000526669 COL18A1P39060 1754 aa18.68■□□□□ 0.58
CD44-224ENST00000526669 LRP6O75581 1613 aa18.68■□□□□ 0.58
CD44-224ENST00000526669 ILDR1Q86SU0 546 aaPredicted RBP18.68■□□□□ 0.58
CD44-224ENST00000526669 RGPD2P0DJD1 1756 aa18.67■□□□□ 0.58
CD44-224ENST00000526669 GCP02774 474 aa18.66■□□□□ 0.58
CD44-224ENST00000526669 ZC3H6P61129 1189 aaKnown RBP18.66■□□□□ 0.58
CD44-224ENST00000526669 COL14A1Q05707 1796 aaKnown RBP18.65■□□□□ 0.58
CD44-224ENST00000526669 ADAMTS2O95450 1211 aa18.65■□□□□ 0.58
CD44-224ENST00000526669 RRS1Q15050 365 aaKnown RBP18.65■□□□□ 0.58
CD44-224ENST00000526669 DIEXFQ68CQ4 756 aaKnown RBP18.65■□□□□ 0.58
CD44-224ENST00000526669 KCNH5Q8NCM2 988 aa18.64■□□□□ 0.57
CD44-224ENST00000526669 PARD3Q8TEW0 1356 aa18.64■□□□□ 0.57
CD44-224ENST00000526669 SPATA31A6Q5VVP1 1343 aa18.63■□□□□ 0.57
CD44-224ENST00000526669 KIAA0232Q92628 1395 aa18.63■□□□□ 0.57
CD44-224ENST00000526669 LMO7Q8WWI1 1683 aa18.63■□□□□ 0.57
CD44-224ENST00000526669 CHRNA2Q15822 529 aa18.62■□□□□ 0.57
CD44-224ENST00000526669 EMILIN1Q9Y6C2 1016 aa18.62■□□□□ 0.57
CD44-224ENST00000526669 NRAPQ86VF7 1730 aa18.61■□□□□ 0.57
CD44-224ENST00000526669 NWD2Q9ULI1 1742 aa18.61■□□□□ 0.57
CD44-224ENST00000526669 PRKRIP1Q9H875 184 aaPredicted RBP18.61■□□□□ 0.57
CD44-224ENST00000526669 MAP3K19Q56UN5 1328 aa18.6■□□□□ 0.57
CD44-224ENST00000526669 ANP32CO43423 234 aa18.6■□□□□ 0.57
CD44-224ENST00000526669 PRDM11Q9NQV5 511 aa18.6■□□□□ 0.57
CD44-224ENST00000526669 AATKQ6ZMQ8 1374 aa18.59■□□□□ 0.57
CD44-224ENST00000526669 PPM1GO15355 546 aaPredicted RBP18.59■□□□□ 0.57
CD44-224ENST00000526669 MEX3CQ5U5Q3 659 aaKnown RBP18.59■□□□□ 0.57
CD44-224ENST00000526669 CPDO75976 1380 aa18.58■□□□□ 0.57
CD44-224ENST00000526669 PPP2R1AP30153 589 aa18.58■□□□□ 0.56
CD44-224ENST00000526669 RALBP1Q15311 655 aa18.58■□□□□ 0.56
CD44-224ENST00000526669 ARHGEF25Q86VW2 580 aa18.58■□□□□ 0.56
CD44-224ENST00000526669 AMPHP49418 695 aa18.57■□□□□ 0.56
CD44-224ENST00000526669 POLKQ9UBT6 870 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 109.6 ms