RNA–Protein interactions for RNA: ENST00000523427.1

PVT1-219, Transcript of Pvt1 oncogene, humanhuman

TSL 3 BASIC

Gene PVT1, Length 938 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-219ENST00000523427 PSDA5PKW4 1024 aaPredicted RBP38.04■■■■□ 3.68
PVT1-219ENST00000523427 BAG6P46379 1132 aa38.04■■■■□ 3.68
PVT1-219ENST00000523427 TRPM3Q9HCF6 1732 aaPredicted RBP38.04■■■■□ 3.68
PVT1-219ENST00000523427 PRDM11Q9NQV5 511 aa38.01■■■■□ 3.68
PVT1-219ENST00000523427 TULP4Q9NRJ4 1543 aa38.01■■■■□ 3.67
PVT1-219ENST00000523427 NRAPQ86VF7 1730 aa37.99■■■■□ 3.67
PVT1-219ENST00000523427 ALS2Q96Q42 1657 aa37.97■■■■□ 3.67
PVT1-219ENST00000523427 COL14A1Q05707 1796 aaKnown RBP37.96■■■■□ 3.67
PVT1-219ENST00000523427 SPATA31A5Q5VU36 1347 aa37.96■■■■□ 3.67
PVT1-219ENST00000523427 SPATA31A7Q8IWB4 1347 aa37.96■■■■□ 3.67
PVT1-219ENST00000523427 EN1Q05925 392 aaPredicted RBP37.95■■■■□ 3.67
PVT1-219ENST00000523427 NUTM2GQ5VZR2 741 aa37.94■■■■□ 3.66
PVT1-219ENST00000523427 NUDT16Q96DE0 195 aaKnown RBP37.94■■■■□ 3.66
PVT1-219ENST00000523427 CHRNA2Q15822 529 aa37.93■■■■□ 3.66
PVT1-219ENST00000523427 STRN4Q9NRL3 753 aa37.92■■■■□ 3.66
PVT1-219ENST00000523427 ZC3H6P61129 1189 aaKnown RBP37.88■■■■□ 3.65
PVT1-219ENST00000523427 KIAA0232Q92628 1395 aa37.88■■■■□ 3.65
PVT1-219ENST00000523427 CDK19Q9BWU1 502 aa37.87■■■■□ 3.65
PVT1-219ENST00000523427 STAC3Q96MF2 364 aa37.86■■■■□ 3.65
PVT1-219ENST00000523427 HRCP23327 699 aa37.85■■■■□ 3.65
PVT1-219ENST00000523427 USP35Q9P2H5 1018 aa37.84■■■■□ 3.65
PVT1-219ENST00000523427 ATP7BP35670 1465 aa37.83■■■■□ 3.65
PVT1-219ENST00000523427 R3HDM1Q15032 1099 aaKnown RBP37.81■■■■□ 3.64
PVT1-219ENST00000523427 SPATA31A1Q5TZJ5 1347 aa37.81■■■■□ 3.64
PVT1-219ENST00000523427 CRYBG1Q9Y4K1 1723 aa37.81■■■■□ 3.64
PVT1-219ENST00000523427 ARHGEF28Q8N1W1 1705 aaKnown RBP37.79■■■■□ 3.64
PVT1-219ENST00000523427 EVA1CP58658 441 aa37.79■■■■□ 3.64
PVT1-219ENST00000523427 TRIM37O94972 964 aa37.78■■■■□ 3.64
PVT1-219ENST00000523427 ACEP12821 1306 aa37.78■■■■□ 3.64
PVT1-219ENST00000523427 EZH2Q15910 746 aaKnown RBP37.77■■■■□ 3.64
PVT1-219ENST00000523427 NBPF8Q3BBV2 869 aa37.76■■■■□ 3.64
PVT1-219ENST00000523427 LRP5O75197 1615 aa37.76■■■■□ 3.63
PVT1-219ENST00000523427 THSD7AQ9UPZ6 1657 aa37.76■■■■□ 3.63
PVT1-219ENST00000523427 RGPD1P0DJD0 1748 aa37.75■■■■□ 3.63
PVT1-219ENST00000523427 ITSN1Q15811 1721 aa37.75■■■■□ 3.63
PVT1-219ENST00000523427 CCDC61Q9Y6R9 512 aa37.74■■■■□ 3.63
PVT1-219ENST00000523427 ABTB2Q8N961 1025 aa37.73■■■■□ 3.63
PVT1-219ENST00000523427 FAM196AQ6ZSG2 479 aa37.72■■■■□ 3.63
PVT1-219ENST00000523427 PHRF1Q9P1Y6 1649 aaKnown RBP37.69■■■■□ 3.62
PVT1-219ENST00000523427 APBA3O96018 575 aa37.69■■■■□ 3.62
PVT1-219ENST00000523427 PDE3BQ13370 1112 aa37.68■■■■□ 3.62
PVT1-219ENST00000523427 POLR3AO14802 1390 aaPredicted RBP37.68■■■■□ 3.62
PVT1-219ENST00000523427 NBPF1Q3BBV0 1214 aa37.67■■■■□ 3.62
PVT1-219ENST00000523427 LARP1Q6PKG0 1096 aaKnown RBP37.66■■■■□ 3.62
PVT1-219ENST00000523427 PLEKHG3A1L390 1219 aa37.65■■■■□ 3.62
PVT1-219ENST00000523427 SRPK2P78362 688 aaKnown RBP37.65■■■■□ 3.62
PVT1-219ENST00000523427 CAMKK2Q96RR4 588 aa37.65■■■■□ 3.62
PVT1-219ENST00000523427 TNS1Q9HBL0 1735 aaKnown RBP37.64■■■■□ 3.62
PVT1-219ENST00000523427 DISP2A7MBM2 1401 aa37.63■■■■□ 3.61
PVT1-219ENST00000523427 SSH2Q76I76 1423 aa37.63■■■■□ 3.61
PVT1-219ENST00000523427 ZBTB7CA1YPR0 619 aa37.63■■■■□ 3.61
PVT1-219ENST00000523427 BARGINQ6ZT62 677 aa37.6■■■■□ 3.61
PVT1-219ENST00000523427 CABP2Q9NPB3 220 aa37.6■■■■□ 3.61
PVT1-219ENST00000523427 TCP11L2Q8N4U5 519 aa37.59■■■■□ 3.61
PVT1-219ENST00000523427 TOPAZ1Q8N9V7 1692 aa37.58■■■■□ 3.61
PVT1-219ENST00000523427 CAMTA1Q9Y6Y1 1673 aa37.58■■■■□ 3.61
PVT1-219ENST00000523427 NLRP13Q86W25 1043 aa37.57■■■■□ 3.6
PVT1-219ENST00000523427 NRKQ7Z2Y5 1582 aa37.55■■■■□ 3.6
PVT1-219ENST00000523427 PPIP5K1Q6PFW1 1433 aa37.55■■■■□ 3.6
PVT1-219ENST00000523427 GCP02774 474 aa37.54■■■■□ 3.6
PVT1-219ENST00000523427 USP19O94966 1318 aa37.54■■■■□ 3.6
PVT1-219ENST00000523427 CENPJQ9HC77 1338 aaPredicted RBP37.53■■■■□ 3.6
PVT1-219ENST00000523427 CPDO75976 1380 aa37.52■■■■□ 3.6
PVT1-219ENST00000523427 KIAA1210Q9ULL0 1709 aa37.48■■■■□ 3.59
PVT1-219ENST00000523427 PARD3Q8TEW0 1356 aa37.47■■■■□ 3.59
PVT1-219ENST00000523427 CABP1Q9NZU7 370 aa37.47■■■■□ 3.59
PVT1-219ENST00000523427 NLRP6P59044 892 aa37.46■■■■□ 3.59
PVT1-219ENST00000523427 NBPF14Q5TI25 921 aa37.45■■■■□ 3.59
PVT1-219ENST00000523427 THRAP3Q9Y2W1 955 aaKnown RBP37.45■■■■□ 3.59
PVT1-219ENST00000523427 LMO7Q8WWI1 1683 aa37.44■■■■□ 3.58
PVT1-219ENST00000523427 COL5A2P05997 1499 aaPredicted RBP37.42■■■■□ 3.58
PVT1-219ENST00000523427 CRB1P82279 1406 aa37.36■■■■□ 3.57
PVT1-219ENST00000523427 TOM1L2Q6ZVM7 507 aa37.36■■■■□ 3.57
PVT1-219ENST00000523427 USP6P35125 1406 aa37.36■■■■□ 3.57
PVT1-219ENST00000523427 SOX12O15370 315 aa37.33■■■■□ 3.57
PVT1-219ENST00000523427 RREB1Q92766 1687 aa37.33■■■■□ 3.57
PVT1-219ENST00000523427 QRICH2Q9H0J4 1663 aa37.33■■■■□ 3.57
PVT1-219ENST00000523427 NUP188Q5SRE5 1749 aa37.33■■■■□ 3.57
PVT1-219ENST00000523427 BRD4O60885 1362 aaPredicted RBP37.32■■■■□ 3.57
PVT1-219ENST00000523427 DDB1Q16531 1140 aa37.32■■■■□ 3.56
PVT1-219ENST00000523427 L3MBTL2Q969R5 705 aa37.31■■■■□ 3.56
PVT1-219ENST00000523427 AATKQ6ZMQ8 1374 aa37.3■■■■□ 3.56
PVT1-219ENST00000523427 PPP1R1BQ9UD71 204 aaPredicted RBP37.3■■■■□ 3.56
PVT1-219ENST00000523427 OVOS2A0A0G2JMS6 1433 aa37.28■■■■□ 3.56
PVT1-219ENST00000523427 OVOS2A0A0J9YW53 1432 aa37.28■■■■□ 3.56
PVT1-219ENST00000523427 OVOS2Q6IE36 1432 aa37.28■■■■□ 3.56
PVT1-219ENST00000523427 PARP4Q9UKK3 1724 aaKnown RBP37.28■■■■□ 3.56
PVT1-219ENST00000523427 AXIN2Q9Y2T1 843 aa37.28■■■■□ 3.56
PVT1-219ENST00000523427 EVC2Q86UK5 1308 aa37.28■■■■□ 3.56
PVT1-219ENST00000523427 C11orf95C9JLR9 678 aaPredicted RBP37.26■■■■□ 3.56
PVT1-219ENST00000523427 SPON1Q9HCB6 807 aa37.26■■■■□ 3.56
PVT1-219ENST00000523427 PTF1AQ7RTS3 328 aa37.25■■■■□ 3.55
PVT1-219ENST00000523427 SLIT3O75094 1523 aa37.24■■■■□ 3.55
PVT1-219ENST00000523427 CSB-PGBD3P0DP91 1061 aa37.23■■■■□ 3.55
PVT1-219ENST00000523427 KCNQ2O43526 872 aa37.22■■■■□ 3.55
PVT1-219ENST00000523427 SIN3AQ96ST3 1273 aa37.22■■■■□ 3.55
PVT1-219ENST00000523427 WDR17Q8IZU2 1322 aa37.21■■■■□ 3.55
PVT1-219ENST00000523427 TTC21BQ7Z4L5 1316 aa37.2■■■■□ 3.55
PVT1-219ENST00000523427 NEUROD1Q13562 356 aa37.2■■■■□ 3.55
PVT1-219ENST00000523427 PIK3C2AO00443 1686 aa37.18■■■■□ 3.54
Retrieved 100 of 20,778 RNA–protein pairs in 89.1 ms