RNA–Protein interactions for RNA: ENST00000523088.5

HDAC3-216, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-216ENST00000523088 LAMC1P11047 1609 aa9.89□□□□□ -0.83
HDAC3-216ENST00000523088 COL16A1Q07092 1604 aaPredicted RBP9.89□□□□□ -0.83
HDAC3-216ENST00000523088 ANKRD30BQ9BXX2 1392 aa9.89□□□□□ -0.83
HDAC3-216ENST00000523088 FKBP8Q14318 412 aa9.89□□□□□ -0.83
HDAC3-216ENST00000523088 HSP90AA2PQ14568 343 aaPredicted RBP9.89□□□□□ -0.83
HDAC3-216ENST00000523088 CCDC27Q2M243 656 aa9.89□□□□□ -0.83
HDAC3-216ENST00000523088 NUTM2DQ5VT03 806 aaPredicted RBP9.89□□□□□ -0.83
HDAC3-216ENST00000523088 ILDR2Q71H61 639 aa9.89□□□□□ -0.83
HDAC3-216ENST00000523088 CEP120Q8N960 986 aa9.89□□□□□ -0.83
HDAC3-216ENST00000523088 PTPRUQ92729 1446 aa9.89□□□□□ -0.83
HDAC3-216ENST00000523088 SETD5Q9C0A6 1442 aa9.89□□□□□ -0.83
HDAC3-216ENST00000523088 NALCNQ8IZF0 1738 aa9.88□□□□□ -0.83
HDAC3-216ENST00000523088 FAM43BQ6ZT52 329 aaPredicted RBP9.88□□□□□ -0.83
HDAC3-216ENST00000523088 RGS22Q8NE09 1264 aa9.88□□□□□ -0.83
HDAC3-216ENST00000523088 RBM19Q9Y4C8 960 aaKnown RBP9.88□□□□□ -0.83
HDAC3-216ENST00000523088 SUPT16HQ9Y5B9 1047 aaKnown RBP9.88□□□□□ -0.83
HDAC3-216ENST00000523088 NHSL1Q5SYE7 1610 aa9.88□□□□□ -0.83
HDAC3-216ENST00000523088 KNDC1Q76NI1 1749 aa9.87□□□□□ -0.83
HDAC3-216ENST00000523088 SPATA31A6Q5VVP1 1343 aa9.87□□□□□ -0.83
HDAC3-216ENST00000523088 METP08581 1390 aa9.87□□□□□ -0.83
HDAC3-216ENST00000523088 ASXL1Q8IXJ9 1541 aa9.87□□□□□ -0.83
HDAC3-216ENST00000523088 ANP32AP39687 249 aaKnown RBP9.86□□□□□ -0.83
HDAC3-216ENST00000523088 HSP90AB4PQ58FF6 505 aa9.86□□□□□ -0.83
HDAC3-216ENST00000523088 FAM177A1Q8N128 213 aaPredicted RBP9.86□□□□□ -0.83
HDAC3-216ENST00000523088 IL27Q8NEV9 243 aa9.86□□□□□ -0.83
HDAC3-216ENST00000523088 RBM33Q96EV2 1170 aaKnown RBP9.86□□□□□ -0.83
HDAC3-216ENST00000523088 MPHOSPH9Q99550 1183 aa9.86□□□□□ -0.83
HDAC3-216ENST00000523088 MST1RQ04912 1400 aa9.85□□□□□ -0.83
HDAC3-216ENST00000523088 SPATA31E1Q6ZUB1 1445 aa9.85□□□□□ -0.83
HDAC3-216ENST00000523088 CDC42BPGQ6DT37 1551 aa9.84□□□□□ -0.83
HDAC3-216ENST00000523088 SENP3Q9H4L4 574 aaPredicted RBP9.84□□□□□ -0.83
HDAC3-216ENST00000523088 MYOM2P54296 1465 aa9.84□□□□□ -0.83
HDAC3-216ENST00000523088 TECPR2O15040 1411 aa9.83□□□□□ -0.84
HDAC3-216ENST00000523088 PIK3C2GO75747 1445 aa9.82□□□□□ -0.84
HDAC3-216ENST00000523088 MSH5O43196 834 aa9.82□□□□□ -0.84
HDAC3-216ENST00000523088 BRINP3Q76B58 766 aa9.82□□□□□ -0.84
HDAC3-216ENST00000523088 RAB3GAP2Q9H2M9 1393 aa9.82□□□□□ -0.84
HDAC3-216ENST00000523088 RAD21O60216 631 aa9.81□□□□□ -0.84
HDAC3-216ENST00000523088 NBPF20Q3BBV1 942 aa9.81□□□□□ -0.84
HDAC3-216ENST00000523088 FAM43AQ8N2R8 423 aa9.81□□□□□ -0.84
HDAC3-216ENST00000523088 KCTD17Q8N5Z5 321 aa9.81□□□□□ -0.84
HDAC3-216ENST00000523088 NRXN1Q9ULB1 1477 aa9.8□□□□□ -0.84
HDAC3-216ENST00000523088 LRPPRCP42704 1394 aaKnown RBP9.8□□□□□ -0.84
HDAC3-216ENST00000523088 ABCC11Q96J66 1382 aa9.8□□□□□ -0.84
HDAC3-216ENST00000523088 ROBO2Q9HCK4 1378 aa9.8□□□□□ -0.84
HDAC3-216ENST00000523088 PATL2C9JE40 543 aaKnown RBP9.8□□□□□ -0.84
HDAC3-216ENST00000523088 OS9Q13438 667 aaPredicted RBP9.8□□□□□ -0.84
HDAC3-216ENST00000523088 EXOC8Q8IYI6 725 aa9.8□□□□□ -0.84
HDAC3-216ENST00000523088 ZNF526Q8TF50 670 aaPredicted RBP9.8□□□□□ -0.84
HDAC3-216ENST00000523088 LRRC59Q96AG4 307 aaKnown RBP9.8□□□□□ -0.84
HDAC3-216ENST00000523088 KIF1AQ12756 1690 aa9.8□□□□□ -0.84
HDAC3-216ENST00000523088 C1orf167Q5SNV9 1468 aa9.79□□□□□ -0.84
HDAC3-216ENST00000523088 MEX3CQ5U5Q3 659 aaKnown RBP9.79□□□□□ -0.84
HDAC3-216ENST00000523088 ZNF772Q68DY9 489 aaPredicted RBP9.79□□□□□ -0.84
HDAC3-216ENST00000523088 ZBTB22O15209 634 aa9.78□□□□□ -0.84
HDAC3-216ENST00000523088 FOXD1Q16676 465 aa9.78□□□□□ -0.84
HDAC3-216ENST00000523088 SIRT1Q96EB6 747 aa9.78□□□□□ -0.84
HDAC3-216ENST00000523088 NOP58Q9Y2X3 529 aaKnown RBP9.78□□□□□ -0.84
HDAC3-216ENST00000523088 DLC1Q96QB1 1528 aa9.77□□□□□ -0.84
HDAC3-216ENST00000523088 FMN2Q9NZ56 1722 aa9.77□□□□□ -0.85
HDAC3-216ENST00000523088 YTHDC2Q9H6S0 1430 aaKnown RBP9.77□□□□□ -0.85
HDAC3-216ENST00000523088 TTC36A6NLP5 189 aa9.77□□□□□ -0.85
HDAC3-216ENST00000523088 IRX3P78415 501 aaPredicted RBP9.77□□□□□ -0.85
HDAC3-216ENST00000523088 RGL3Q3MIN7 710 aa9.77□□□□□ -0.85
HDAC3-216ENST00000523088 NBPF11Q86T75 865 aa9.77□□□□□ -0.85
HDAC3-216ENST00000523088 COL22A1Q8NFW1 1626 aaPredicted RBP9.77□□□□□ -0.85
HDAC3-216ENST00000523088 NPHP3Q7Z494 1330 aa9.77□□□□□ -0.85
HDAC3-216ENST00000523088 ADGRF5Q8IZF2 1346 aa9.77□□□□□ -0.85
HDAC3-216ENST00000523088 DHX57Q6P158 1386 aaKnown RBP9.76□□□□□ -0.85
HDAC3-216ENST00000523088 LRP6O75581 1613 aa9.76□□□□□ -0.85
HDAC3-216ENST00000523088 DIEXFQ68CQ4 756 aaKnown RBP9.76□□□□□ -0.85
HDAC3-216ENST00000523088 HDAC5Q9UQL6 1122 aa9.76□□□□□ -0.85
HDAC3-216ENST00000523088 EIF3AQ14152 1382 aaKnown RBP9.75□□□□□ -0.85
HDAC3-216ENST00000523088 CDK12Q9NYV4 1490 aaPredicted RBP9.75□□□□□ -0.85
HDAC3-216ENST00000523088 NBPF1Q3BBV0 1214 aa9.75□□□□□ -0.85
HDAC3-216ENST00000523088 USP35Q9P2H5 1018 aa9.75□□□□□ -0.85
HDAC3-216ENST00000523088 RGS17Q9UGC6 210 aaPredicted RBP9.75□□□□□ -0.85
HDAC3-216ENST00000523088 ADGRB2O60241 1585 aa9.75□□□□□ -0.85
HDAC3-216ENST00000523088 PNPLA6Q8IY17 1366 aa9.75□□□□□ -0.85
HDAC3-216ENST00000523088 C14orf93Q9H972 538 aaKnown RBP9.74□□□□□ -0.85
HDAC3-216ENST00000523088 SOS2Q07890 1332 aaPredicted RBP9.74□□□□□ -0.85
HDAC3-216ENST00000523088 KIAA1210Q9ULL0 1709 aa9.73□□□□□ -0.85
HDAC3-216ENST00000523088 MARF1Q9Y4F3 1742 aaKnown RBP9.73□□□□□ -0.85
HDAC3-216ENST00000523088 HSP90AA1P07900 732 aaKnown RBP9.73□□□□□ -0.85
HDAC3-216ENST00000523088 RBM25P49756 843 aaKnown RBP9.72□□□□□ -0.85
HDAC3-216ENST00000523088 CASC1Q6TDU7 716 aa9.72□□□□□ -0.85
HDAC3-216ENST00000523088 TMTC2Q8N394 836 aa9.72□□□□□ -0.85
HDAC3-216ENST00000523088 ANKARQ7Z5J8 1434 aa9.72□□□□□ -0.85
HDAC3-216ENST00000523088 ITSN1Q15811 1721 aa9.71□□□□□ -0.85
HDAC3-216ENST00000523088 POTEAQ6S8J7 498 aa9.71□□□□□ -0.86
HDAC3-216ENST00000523088 PDCL3Q9H2J4 239 aa9.71□□□□□ -0.86
HDAC3-216ENST00000523088 STK26Q9P289 416 aa9.71□□□□□ -0.86
HDAC3-216ENST00000523088 PXDNQ92626 1479 aa9.71□□□□□ -0.86
HDAC3-216ENST00000523088 ADGRB1O14514 1584 aa9.71□□□□□ -0.86
HDAC3-216ENST00000523088 PSEN1P49768 467 aa9.7□□□□□ -0.86
HDAC3-216ENST00000523088 ESCO1Q5FWF5 840 aa9.7□□□□□ -0.86
HDAC3-216ENST00000523088 TAF3Q5VWG9 929 aa9.7□□□□□ -0.86
HDAC3-216ENST00000523088 MTMR7Q9Y216 660 aa9.7□□□□□ -0.86
HDAC3-216ENST00000523088 LAS1LQ9Y4W2 734 aaKnown RBP9.7□□□□□ -0.86
HDAC3-216ENST00000523088 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 137.1 ms