RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 SOS2Q07890 1332 aaPredicted RBP22.34■■□□□ 1.17
LSM1-204ENST00000522515 TRPM3Q9HCF6 1732 aaPredicted RBP22.34■■□□□ 1.17
LSM1-204ENST00000522515 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.33■■□□□ 1.17
LSM1-204ENST00000522515 KNSTRNQ9Y448 316 aa22.33■■□□□ 1.17
LSM1-204ENST00000522515 BRD4O60885 1362 aaPredicted RBP22.32■■□□□ 1.16
LSM1-204ENST00000522515 PAK3O75914 559 aaPredicted RBP22.32■■□□□ 1.16
LSM1-204ENST00000522515 SBNO1A3KN83 1393 aa22.29■■□□□ 1.16
LSM1-204ENST00000522515 PHLPP1O60346 1717 aa22.29■■□□□ 1.16
LSM1-204ENST00000522515 TTC21AQ8NDW8 1320 aa22.29■■□□□ 1.16
LSM1-204ENST00000522515 CGNL1Q0VF96 1302 aa22.29■■□□□ 1.16
LSM1-204ENST00000522515 AMER1Q5JTC6 1135 aaPredicted RBP22.29■■□□□ 1.16
LSM1-204ENST00000522515 NME9Q86XW9 330 aa22.29■■□□□ 1.16
LSM1-204ENST00000522515 SPATA31A3Q5VYP0 1347 aa22.28■■□□□ 1.16
LSM1-204ENST00000522515 FYB1O15117 783 aa22.28■■□□□ 1.16
LSM1-204ENST00000522515 PIK3C2AO00443 1686 aa22.27■■□□□ 1.16
LSM1-204ENST00000522515 ALS2Q96Q42 1657 aa22.27■■□□□ 1.16
LSM1-204ENST00000522515 COL16A1Q07092 1604 aaPredicted RBP22.27■■□□□ 1.16
LSM1-204ENST00000522515 TNS3Q68CZ2 1445 aa22.27■■□□□ 1.15
LSM1-204ENST00000522515 ABTB2Q8N961 1025 aa22.26■■□□□ 1.15
LSM1-204ENST00000522515 ZRANB1Q9UGI0 708 aa22.26■■□□□ 1.15
LSM1-204ENST00000522515 KIF20BQ96Q89 1820 aa22.26■■□□□ 1.15
LSM1-204ENST00000522515 CNGB1Q14028 1251 aaPredicted RBP22.25■■□□□ 1.15
LSM1-204ENST00000522515 LMOD2Q6P5Q4 547 aa22.25■■□□□ 1.15
LSM1-204ENST00000522515 GGNBP2Q9H3C7 697 aa22.25■■□□□ 1.15
LSM1-204ENST00000522515 CC2D1BQ5T0F9 858 aaKnown RBP22.25■■□□□ 1.15
LSM1-204ENST00000522515 NUTM2GQ5VZR2 741 aa22.25■■□□□ 1.15
LSM1-204ENST00000522515 LRRC59Q96AG4 307 aaKnown RBP22.24■■□□□ 1.15
LSM1-204ENST00000522515 NPC1L1Q9UHC9 1359 aa22.23■■□□□ 1.15
LSM1-204ENST00000522515 NLRP6P59044 892 aa22.22■■□□□ 1.15
LSM1-204ENST00000522515 HSPA1LP34931 641 aa22.21■■□□□ 1.15
LSM1-204ENST00000522515 NSD2O96028 1365 aa22.21■■□□□ 1.15
LSM1-204ENST00000522515 USP31Q70CQ4 1352 aa22.21■■□□□ 1.15
LSM1-204ENST00000522515 FBXO41Q8TF61 875 aa22.21■■□□□ 1.15
LSM1-204ENST00000522515 ARHGEF10O15013 1369 aa22.2■■□□□ 1.15
LSM1-204ENST00000522515 OVOS2A0A0J9YW53 1432 aa22.2■■□□□ 1.14
LSM1-204ENST00000522515 OVOS2Q6IE36 1432 aa22.2■■□□□ 1.14
LSM1-204ENST00000522515 MARF1Q9Y4F3 1742 aaKnown RBP22.2■■□□□ 1.14
LSM1-204ENST00000522515 DIEXFQ68CQ4 756 aaKnown RBP22.2■■□□□ 1.14
LSM1-204ENST00000522515 ANKRD26Q9UPS8 1709 aa22.19■■□□□ 1.14
LSM1-204ENST00000522515 NLRP13Q86W25 1043 aa22.19■■□□□ 1.14
LSM1-204ENST00000522515 COG3Q96JB2 828 aa22.19■■□□□ 1.14
LSM1-204ENST00000522515 USP54Q70EL1 1684 aa22.18■■□□□ 1.14
LSM1-204ENST00000522515 PLEKHG5O94827 1062 aa22.17■■□□□ 1.14
LSM1-204ENST00000522515 PNPLA6Q8IY17 1366 aa22.16■■□□□ 1.14
LSM1-204ENST00000522515 MED1Q15648 1581 aaPredicted RBP22.16■■□□□ 1.14
LSM1-204ENST00000522515 MORC1Q86VD1 984 aa22.16■■□□□ 1.14
LSM1-204ENST00000522515 CABLES1Q8TDN4 633 aa22.15■■□□□ 1.14
LSM1-204ENST00000522515 USP19O94966 1318 aa22.15■■□□□ 1.14
LSM1-204ENST00000522515 CRYBG1Q9Y4K1 1723 aa22.14■■□□□ 1.13
LSM1-204ENST00000522515 COL22A1Q8NFW1 1626 aaPredicted RBP22.13■■□□□ 1.13
LSM1-204ENST00000522515 PARD3Q8TEW0 1356 aa22.13■■□□□ 1.13
LSM1-204ENST00000522515 SLIT3O75094 1523 aa22.13■■□□□ 1.13
LSM1-204ENST00000522515 TNNT2P45379 298 aaPredicted RBP22.12■■□□□ 1.13
LSM1-204ENST00000522515 PRKRIP1Q9H875 184 aaPredicted RBP22.12■■□□□ 1.13
LSM1-204ENST00000522515 PHRF1Q9P1Y6 1649 aaKnown RBP22.12■■□□□ 1.13
LSM1-204ENST00000522515 SOX12O15370 315 aa22.12■■□□□ 1.13
LSM1-204ENST00000522515 FBLN1P23142 703 aa22.12■■□□□ 1.13
LSM1-204ENST00000522515 JCADQ9P266 1359 aa22.11■■□□□ 1.13
LSM1-204ENST00000522515 SHPRHQ149N8 1683 aa22.11■■□□□ 1.13
LSM1-204ENST00000522515 ANP32CO43423 234 aa22.1■■□□□ 1.13
LSM1-204ENST00000522515 GCP02774 474 aa22.1■■□□□ 1.13
LSM1-204ENST00000522515 ABCA3Q99758 1704 aa22.1■■□□□ 1.13
LSM1-204ENST00000522515 RALBP1Q15311 655 aa22.09■■□□□ 1.13
LSM1-204ENST00000522515 KCNH5Q8NCM2 988 aa22.08■■□□□ 1.13
LSM1-204ENST00000522515 NFAT5O94916 1531 aa22.08■■□□□ 1.12
LSM1-204ENST00000522515 HAP1P54257 671 aaPredicted RBP22.06■■□□□ 1.12
LSM1-204ENST00000522515 AATKQ6ZMQ8 1374 aa22.05■■□□□ 1.12
LSM1-204ENST00000522515 RRS1Q15050 365 aaKnown RBP22.05■■□□□ 1.12
LSM1-204ENST00000522515 PPP2R1AP30153 589 aa22.04■■□□□ 1.12
LSM1-204ENST00000522515 ZC3H6P61129 1189 aaKnown RBP22.04■■□□□ 1.12
LSM1-204ENST00000522515 MAP2P11137 1827 aaKnown RBP22.03■■□□□ 1.12
LSM1-204ENST00000522515 NUTM2BA6NNL0 878 aaPredicted RBP22.03■■□□□ 1.12
LSM1-204ENST00000522515 NUTM2EB1AL46 878 aaPredicted RBP22.03■■□□□ 1.12
LSM1-204ENST00000522515 NUTM2AQ8IVF1 878 aaPredicted RBP22.03■■□□□ 1.12
LSM1-204ENST00000522515 POLKQ9UBT6 870 aa22.03■■□□□ 1.12
LSM1-204ENST00000522515 EMILIN1Q9Y6C2 1016 aa22.03■■□□□ 1.12
LSM1-204ENST00000522515 MAP3K19Q56UN5 1328 aa22.02■■□□□ 1.12
LSM1-204ENST00000522515 MYBBP1AQ9BQG0 1328 aaKnown RBP22.02■■□□□ 1.12
LSM1-204ENST00000522515 SPATA31A6Q5VVP1 1343 aa22.01■■□□□ 1.11
LSM1-204ENST00000522515 ARHGEF25Q86VW2 580 aa22.01■■□□□ 1.11
LSM1-204ENST00000522515 LTN1O94822 1766 aa22.01■■□□□ 1.11
LSM1-204ENST00000522515 ZBTB7CA1YPR0 619 aa22■■□□□ 1.11
LSM1-204ENST00000522515 KIAA0232Q92628 1395 aa22■■□□□ 1.11
LSM1-204ENST00000522515 MTHFSP49914 203 aa21.99■■□□□ 1.11
LSM1-204ENST00000522515 CPDO75976 1380 aa21.99■■□□□ 1.11
LSM1-204ENST00000522515 PPM1GO15355 546 aaPredicted RBP21.99■■□□□ 1.11
LSM1-204ENST00000522515 MIER1Q8N108 512 aa21.99■■□□□ 1.11
LSM1-204ENST00000522515 PEAK1Q9H792 1746 aa21.98■■□□□ 1.11
LSM1-204ENST00000522515 SMG6Q86US8 1419 aaKnown RBP21.98■■□□□ 1.11
LSM1-204ENST00000522515 ADAMTS2O95450 1211 aa21.98■■□□□ 1.11
LSM1-204ENST00000522515 LRP6O75581 1613 aa21.97■■□□□ 1.11
LSM1-204ENST00000522515 CHRNA2Q15822 529 aa21.96■■□□□ 1.11
LSM1-204ENST00000522515 PRDM11Q9NQV5 511 aa21.96■■□□□ 1.11
LSM1-204ENST00000522515 AMPHP49418 695 aa21.95■■□□□ 1.11
LSM1-204ENST00000522515 KIF24Q5T7B8 1368 aa21.94■■□□□ 1.1
LSM1-204ENST00000522515 COL18A1P39060 1754 aa21.94■■□□□ 1.1
LSM1-204ENST00000522515 FAM83GA6ND36 823 aa21.94■■□□□ 1.1
LSM1-204ENST00000522515 HOXC9P31274 260 aa21.94■■□□□ 1.1
LSM1-204ENST00000522515 IP6K1Q92551 441 aa21.94■■□□□ 1.1
LSM1-204ENST00000522515 FLT4P35916 1363 aa21.93■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms