RNA–Protein interactions for RNA: ENST00000522012.5

R3HCC1-208, Transcript of R3H domain and coiled-coil containing 1, humanhuman

TSL 1 (best)

Gene R3HCC1, Length 1,500 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
R3HCC1-208ENST00000522012 TTC21BQ7Z4L5 1316 aa28.99■■■□□ 2.23
R3HCC1-208ENST00000522012 ILDR2Q71H61 639 aa28.98■■■□□ 2.23
R3HCC1-208ENST00000522012 PSME1Q06323 249 aa28.97■■■□□ 2.23
R3HCC1-208ENST00000522012 FOXO3O43524 673 aa28.96■■■□□ 2.23
R3HCC1-208ENST00000522012 NME9Q86XW9 330 aa28.96■■■□□ 2.23
R3HCC1-208ENST00000522012 SLAIN2Q9P270 581 aa28.96■■■□□ 2.23
R3HCC1-208ENST00000522012 AKAP12Q02952 1782 aa28.95■■■□□ 2.23
R3HCC1-208ENST00000522012 MON2Q7Z3U7 1717 aa28.94■■■□□ 2.22
R3HCC1-208ENST00000522012 TNNT2P45379 298 aaPredicted RBP28.94■■■□□ 2.22
R3HCC1-208ENST00000522012 CCDC184Q52MB2 194 aa28.93■■■□□ 2.22
R3HCC1-208ENST00000522012 SSH2Q76I76 1423 aa28.93■■■□□ 2.22
R3HCC1-208ENST00000522012 PPP2R1AP30153 589 aa28.92■■■□□ 2.22
R3HCC1-208ENST00000522012 TTC21AQ8NDW8 1320 aa28.91■■■□□ 2.22
R3HCC1-208ENST00000522012 PAK3O75914 559 aaPredicted RBP28.91■■■□□ 2.22
R3HCC1-208ENST00000522012 MRS2Q9HD23 443 aa28.91■■■□□ 2.22
R3HCC1-208ENST00000522012 NLRP13Q86W25 1043 aa28.9■■■□□ 2.22
R3HCC1-208ENST00000522012 ZRANB1Q9UGI0 708 aa28.9■■■□□ 2.22
R3HCC1-208ENST00000522012 XPCQ01831 940 aaPredicted RBP28.89■■■□□ 2.22
R3HCC1-208ENST00000522012 BRINP3Q76B58 766 aa28.89■■■□□ 2.21
R3HCC1-208ENST00000522012 COG3Q96JB2 828 aa28.89■■■□□ 2.21
R3HCC1-208ENST00000522012 BRD4O60885 1362 aaPredicted RBP28.88■■■□□ 2.21
R3HCC1-208ENST00000522012 SOCS7O14512 581 aa28.88■■■□□ 2.21
R3HCC1-208ENST00000522012 KRT28Q7Z3Y7 464 aa28.88■■■□□ 2.21
R3HCC1-208ENST00000522012 NRKQ7Z2Y5 1582 aa28.87■■■□□ 2.21
R3HCC1-208ENST00000522012 KIF1AQ12756 1690 aa28.86■■■□□ 2.21
R3HCC1-208ENST00000522012 DDX17Q92841 729 aaKnown RBP28.84■■■□□ 2.21
R3HCC1-208ENST00000522012 ABTB2Q8N961 1025 aa28.84■■■□□ 2.21
R3HCC1-208ENST00000522012 NPHP3Q7Z494 1330 aa28.83■■■□□ 2.21
R3HCC1-208ENST00000522012 KIF20BQ96Q89 1820 aa28.82■■■□□ 2.2
R3HCC1-208ENST00000522012 TOM1O60784 492 aa28.82■■■□□ 2.2
R3HCC1-208ENST00000522012 NUTM2GQ5VZR2 741 aa28.81■■■□□ 2.2
R3HCC1-208ENST00000522012 NLRP6P59044 892 aa28.8■■■□□ 2.2
R3HCC1-208ENST00000522012 SCAF1Q9H7N4 1312 aaKnown RBP28.79■■■□□ 2.2
R3HCC1-208ENST00000522012 USP31Q70CQ4 1352 aa28.78■■■□□ 2.2
R3HCC1-208ENST00000522012 LMOD2Q6P5Q4 547 aa28.78■■■□□ 2.2
R3HCC1-208ENST00000522012 OVOS2A0A0J9YW53 1432 aa28.76■■■□□ 2.2
R3HCC1-208ENST00000522012 OVOS2Q6IE36 1432 aa28.76■■■□□ 2.2
R3HCC1-208ENST00000522012 MTHFSP49914 203 aa28.76■■■□□ 2.19
R3HCC1-208ENST00000522012 PIP4K2BP78356 416 aa28.76■■■□□ 2.19
R3HCC1-208ENST00000522012 ANKRD26Q9UPS8 1709 aa28.75■■■□□ 2.19
R3HCC1-208ENST00000522012 FBLN1P23142 703 aa28.75■■■□□ 2.19
R3HCC1-208ENST00000522012 FAM9BQ8IZU0 186 aa28.74■■■□□ 2.19
R3HCC1-208ENST00000522012 SOX12O15370 315 aa28.73■■■□□ 2.19
R3HCC1-208ENST00000522012 PIK3C2AO00443 1686 aa28.72■■■□□ 2.19
R3HCC1-208ENST00000522012 SBNO1A3KN83 1393 aa28.72■■■□□ 2.19
R3HCC1-208ENST00000522012 HSPA1LP34931 641 aa28.71■■■□□ 2.19
R3HCC1-208ENST00000522012 PNISRQ8TF01 805 aaKnown RBP28.7■■■□□ 2.19
R3HCC1-208ENST00000522012 YTHDC1Q96MU7 727 aaKnown RBP28.7■■■□□ 2.19
R3HCC1-208ENST00000522012 POLKQ9UBT6 870 aa28.7■■■□□ 2.19
R3HCC1-208ENST00000522012 AATKQ6ZMQ8 1374 aa28.7■■■□□ 2.18
R3HCC1-208ENST00000522012 PXDNQ92626 1479 aa28.7■■■□□ 2.18
R3HCC1-208ENST00000522012 CFAP53Q96M91 514 aa28.69■■■□□ 2.18
R3HCC1-208ENST00000522012 PPM1GO15355 546 aaPredicted RBP28.69■■■□□ 2.18
R3HCC1-208ENST00000522012 SOS2Q07890 1332 aaPredicted RBP28.68■■■□□ 2.18
R3HCC1-208ENST00000522012 PLEKHG5O94827 1062 aa28.68■■■□□ 2.18
R3HCC1-208ENST00000522012 RRS1Q15050 365 aaKnown RBP28.68■■■□□ 2.18
R3HCC1-208ENST00000522012 TRPM3Q9HCF6 1732 aaPredicted RBP28.67■■■□□ 2.18
R3HCC1-208ENST00000522012 SPATA31A3Q5VYP0 1347 aa28.66■■■□□ 2.18
R3HCC1-208ENST00000522012 EMILIN1Q9Y6C2 1016 aa28.66■■■□□ 2.18
R3HCC1-208ENST00000522012 TNS3Q68CZ2 1445 aa28.65■■■□□ 2.18
R3HCC1-208ENST00000522012 WDR43Q15061 677 aaKnown RBP eCLIP28.62■■■□□ 2.17
R3HCC1-208ENST00000522012 KCNH5Q8NCM2 988 aa28.61■■■□□ 2.17
R3HCC1-208ENST00000522012 ARHGEF10O15013 1369 aa28.61■■■□□ 2.17
R3HCC1-208ENST00000522012 ROBO1Q9Y6N7 1651 aa28.61■■■□□ 2.17
R3HCC1-208ENST00000522012 USP19O94966 1318 aa28.59■■■□□ 2.17
R3HCC1-208ENST00000522012 GCP02774 474 aa28.59■■■□□ 2.17
R3HCC1-208ENST00000522012 MAP3K19Q56UN5 1328 aa28.58■■■□□ 2.17
R3HCC1-208ENST00000522012 MED1Q15648 1581 aaPredicted RBP28.58■■■□□ 2.17
R3HCC1-208ENST00000522012 SMG6Q86US8 1419 aaKnown RBP28.58■■■□□ 2.17
R3HCC1-208ENST00000522012 USP54Q70EL1 1684 aa28.57■■■□□ 2.16
R3HCC1-208ENST00000522012 NHSL1Q5SYE7 1610 aa28.57■■■□□ 2.16
R3HCC1-208ENST00000522012 PNPLA6Q8IY17 1366 aa28.57■■■□□ 2.16
R3HCC1-208ENST00000522012 ALS2Q96Q42 1657 aa28.57■■■□□ 2.16
R3HCC1-208ENST00000522012 AMPHP49418 695 aa28.56■■■□□ 2.16
R3HCC1-208ENST00000522012 ADAMTS8Q9UP79 889 aa28.55■■■□□ 2.16
R3HCC1-208ENST00000522012 MARF1Q9Y4F3 1742 aaKnown RBP28.55■■■□□ 2.16
R3HCC1-208ENST00000522012 DIAPH1O60610 1272 aaKnown RBP28.54■■■□□ 2.16
R3HCC1-208ENST00000522012 CABLES1Q8TDN4 633 aa28.54■■■□□ 2.16
R3HCC1-208ENST00000522012 INSRP06213 1382 aa28.54■■■□□ 2.16
R3HCC1-208ENST00000522012 ZBTB7CA1YPR0 619 aa28.53■■■□□ 2.16
R3HCC1-208ENST00000522012 LRRC59Q96AG4 307 aaKnown RBP28.53■■■□□ 2.16
R3HCC1-208ENST00000522012 NUDCQ9Y266 331 aa28.53■■■□□ 2.16
R3HCC1-208ENST00000522012 CDK12Q9NYV4 1490 aaPredicted RBP28.53■■■□□ 2.16
R3HCC1-208ENST00000522012 SLIT3O75094 1523 aa28.53■■■□□ 2.16
R3HCC1-208ENST00000522012 AHDC1Q5TGY3 1603 aaPredicted RBP28.52■■■□□ 2.16
R3HCC1-208ENST00000522012 COL3A1P02461 1466 aaPredicted RBP28.51■■■□□ 2.15
R3HCC1-208ENST00000522012 U2SURPO15042 1029 aaKnown RBP28.5■■■□□ 2.15
R3HCC1-208ENST00000522012 NFAT5O94916 1531 aa28.5■■■□□ 2.15
R3HCC1-208ENST00000522012 MAP2P11137 1827 aaKnown RBP28.5■■■□□ 2.15
R3HCC1-208ENST00000522012 HSP90AB2PQ58FF8 381 aa28.49■■■□□ 2.15
R3HCC1-208ENST00000522012 FLT4P35916 1363 aa28.49■■■□□ 2.15
R3HCC1-208ENST00000522012 U2AF1L5P0DN76 240 aaPredicted RBP28.48■■■□□ 2.15
R3HCC1-208ENST00000522012 ZC3H6P61129 1189 aaKnown RBP28.48■■■□□ 2.15
R3HCC1-208ENST00000522012 U2AF1Q01081 240 aaKnown RBP eCLIP28.48■■■□□ 2.15
R3HCC1-208ENST00000522012 ARHGEF25Q86VW2 580 aa28.48■■■□□ 2.15
R3HCC1-208ENST00000522012 HOXC9P31274 260 aa28.47■■■□□ 2.15
R3HCC1-208ENST00000522012 HAP1P54257 671 aaPredicted RBP28.47■■■□□ 2.15
R3HCC1-208ENST00000522012 HNRNPUQ00839 825 aaKnown RBP eCLIP28.47■■■□□ 2.15
R3HCC1-208ENST00000522012 KIF24Q5T7B8 1368 aa28.47■■■□□ 2.15
R3HCC1-208ENST00000522012 IL13P35225 146 aa28.46■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms