RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 SLIT2O94813 1529 aa13.33□□□□□ -0.28
HDAC3-215ENST00000519474 EVC2Q86UK5 1308 aa13.32□□□□□ -0.28
HDAC3-215ENST00000519474 TONSLQ96HA7 1378 aa13.32□□□□□ -0.28
HDAC3-215ENST00000519474 TRPM1Q7Z4N2 1603 aa13.31□□□□□ -0.28
HDAC3-215ENST00000519474 TRPM3Q9HCF6 1732 aaPredicted RBP13.3□□□□□ -0.28
HDAC3-215ENST00000519474 ONECUT3O60422 494 aaPredicted RBP13.3□□□□□ -0.28
HDAC3-215ENST00000519474 VPS72Q15906 364 aa13.3□□□□□ -0.28
HDAC3-215ENST00000519474 ABTB2Q8N961 1025 aa13.3□□□□□ -0.28
HDAC3-215ENST00000519474 PCGF6Q9BYE7 350 aa13.3□□□□□ -0.28
HDAC3-215ENST00000519474 RGS12O14924 1447 aa13.3□□□□□ -0.28
HDAC3-215ENST00000519474 BTG4Q9NY30 223 aa13.29□□□□□ -0.28
HDAC3-215ENST00000519474 MARF1Q9Y4F3 1742 aaKnown RBP13.29□□□□□ -0.28
HDAC3-215ENST00000519474 PPIP5K1Q6PFW1 1433 aa13.29□□□□□ -0.28
HDAC3-215ENST00000519474 ZC3H6P61129 1189 aaKnown RBP13.28□□□□□ -0.28
HDAC3-215ENST00000519474 ZNF692Q9BU19 519 aaPredicted RBP13.28□□□□□ -0.28
HDAC3-215ENST00000519474 ALS2Q96Q42 1657 aa13.28□□□□□ -0.28
HDAC3-215ENST00000519474 CHRNA2Q15822 529 aa13.27□□□□□ -0.29
HDAC3-215ENST00000519474 NLRP13Q86W25 1043 aa13.27□□□□□ -0.29
HDAC3-215ENST00000519474 GCP02774 474 aa13.26□□□□□ -0.29
HDAC3-215ENST00000519474 SEPT12Q8IYM1 358 aa13.26□□□□□ -0.29
HDAC3-215ENST00000519474 CCDC9Q9Y3X0 531 aaKnown RBP13.26□□□□□ -0.29
HDAC3-215ENST00000519474 RALGAPBQ86X10 1494 aa13.25□□□□□ -0.29
HDAC3-215ENST00000519474 PRDM11Q9NQV5 511 aa13.25□□□□□ -0.29
HDAC3-215ENST00000519474 QRICH2Q9H0J4 1663 aa13.24□□□□□ -0.29
HDAC3-215ENST00000519474 BRD4O60885 1362 aaPredicted RBP13.24□□□□□ -0.29
HDAC3-215ENST00000519474 KIAA0232Q92628 1395 aa13.24□□□□□ -0.29
HDAC3-215ENST00000519474 ST20-MTHFSA0A0A6YYL1 179 aa13.24□□□□□ -0.29
HDAC3-215ENST00000519474 NLRP6P59044 892 aa13.24□□□□□ -0.29
HDAC3-215ENST00000519474 TESK2Q96S53 571 aa13.24□□□□□ -0.29
HDAC3-215ENST00000519474 ITSN1Q15811 1721 aa13.24□□□□□ -0.29
HDAC3-215ENST00000519474 SSH2Q76I76 1423 aa13.23□□□□□ -0.29
HDAC3-215ENST00000519474 USP19O94966 1318 aa13.23□□□□□ -0.29
HDAC3-215ENST00000519474 TTC21BQ7Z4L5 1316 aa13.23□□□□□ -0.29
HDAC3-215ENST00000519474 PUS7Q96PZ0 661 aaKnown RBP13.23□□□□□ -0.29
HDAC3-215ENST00000519474 SLC12A5Q9H2X9 1139 aa13.23□□□□□ -0.29
HDAC3-215ENST00000519474 TIMELESSQ9UNS1 1208 aa13.23□□□□□ -0.29
HDAC3-215ENST00000519474 TOPAZ1Q8N9V7 1692 aa13.23□□□□□ -0.29
HDAC3-215ENST00000519474 USP6P35125 1406 aa13.22□□□□□ -0.29
HDAC3-215ENST00000519474 SBNO2Q9Y2G9 1366 aa13.22□□□□□ -0.29
HDAC3-215ENST00000519474 GLI3P10071 1580 aa13.22□□□□□ -0.29
HDAC3-215ENST00000519474 SPATA31A5Q5VU36 1347 aa13.21□□□□□ -0.29
HDAC3-215ENST00000519474 SPATA31A7Q8IWB4 1347 aa13.21□□□□□ -0.29
HDAC3-215ENST00000519474 FAM98CQ17RN3 349 aaKnown RBP13.21□□□□□ -0.29
HDAC3-215ENST00000519474 ABCA3Q99758 1704 aa13.21□□□□□ -0.3
HDAC3-215ENST00000519474 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.21□□□□□ -0.3
HDAC3-215ENST00000519474 CPSF1Q10570 1443 aaKnown RBP13.21□□□□□ -0.3
HDAC3-215ENST00000519474 ATAD2Q6PL18 1390 aa13.2□□□□□ -0.3
HDAC3-215ENST00000519474 CLSPNQ9HAW4 1339 aa13.2□□□□□ -0.3
HDAC3-215ENST00000519474 EVA1CP58658 441 aa13.2□□□□□ -0.3
HDAC3-215ENST00000519474 STRN4Q9NRL3 753 aa13.2□□□□□ -0.3
HDAC3-215ENST00000519474 CRYBG1Q9Y4K1 1723 aa13.19□□□□□ -0.3
HDAC3-215ENST00000519474 KRT27Q7Z3Y8 459 aa13.19□□□□□ -0.3
HDAC3-215ENST00000519474 CCDC125Q86Z20 511 aa13.19□□□□□ -0.3
HDAC3-215ENST00000519474 TMC1Q8TDI8 760 aa13.19□□□□□ -0.3
HDAC3-215ENST00000519474 ZRANB1Q9UGI0 708 aa13.19□□□□□ -0.3
HDAC3-215ENST00000519474 NWD2Q9ULI1 1742 aa13.19□□□□□ -0.3
HDAC3-215ENST00000519474 SPATA31A1Q5TZJ5 1347 aa13.18□□□□□ -0.3
HDAC3-215ENST00000519474 COL14A1Q05707 1796 aaKnown RBP13.18□□□□□ -0.3
HDAC3-215ENST00000519474 DAXXQ9UER7 740 aaPredicted RBP13.18□□□□□ -0.3
HDAC3-215ENST00000519474 CPDO75976 1380 aa13.18□□□□□ -0.3
HDAC3-215ENST00000519474 KTN1Q86UP2 1357 aaKnown RBP13.18□□□□□ -0.3
HDAC3-215ENST00000519474 TTC21AQ8NDW8 1320 aa13.17□□□□□ -0.3
HDAC3-215ENST00000519474 LARP1Q6PKG0 1096 aaKnown RBP13.17□□□□□ -0.3
HDAC3-215ENST00000519474 ERICH6Q7L0X2 663 aa13.17□□□□□ -0.3
HDAC3-215ENST00000519474 ARHGEF25Q86VW2 580 aa13.17□□□□□ -0.3
HDAC3-215ENST00000519474 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.17□□□□□ -0.3
HDAC3-215ENST00000519474 AXIN2Q9Y2T1 843 aa13.17□□□□□ -0.3
HDAC3-215ENST00000519474 PLCH1Q4KWH8 1693 aa13.17□□□□□ -0.3
HDAC3-215ENST00000519474 CAMTA1Q9Y6Y1 1673 aa13.16□□□□□ -0.3
HDAC3-215ENST00000519474 ZBTB7CA1YPR0 619 aa13.15□□□□□ -0.3
HDAC3-215ENST00000519474 HDGFL2Q7Z4V5 671 aaPredicted RBP13.15□□□□□ -0.3
HDAC3-215ENST00000519474 USP35Q9P2H5 1018 aa13.15□□□□□ -0.3
HDAC3-215ENST00000519474 NRAPQ86VF7 1730 aa13.14□□□□□ -0.31
HDAC3-215ENST00000519474 A0A0G2JS52 829 aa13.14□□□□□ -0.31
HDAC3-215ENST00000519474 FAM182BQ5T319 152 aa13.14□□□□□ -0.31
HDAC3-215ENST00000519474 BARGINQ6ZT62 677 aa13.14□□□□□ -0.31
HDAC3-215ENST00000519474 NME9Q86XW9 330 aa13.14□□□□□ -0.31
HDAC3-215ENST00000519474 KCNH5Q8NCM2 988 aa13.14□□□□□ -0.31
HDAC3-215ENST00000519474 CCER1Q8TC90 406 aaPredicted RBP13.14□□□□□ -0.31
HDAC3-215ENST00000519474 TERF2IPQ9NYB0 399 aa13.14□□□□□ -0.31
HDAC3-215ENST00000519474 CD163L1Q9NR16 1453 aa13.14□□□□□ -0.31
HDAC3-215ENST00000519474 PHRF1Q9P1Y6 1649 aaKnown RBP13.13□□□□□ -0.31
HDAC3-215ENST00000519474 BRWD3Q6RI45 1802 aa13.13□□□□□ -0.31
HDAC3-215ENST00000519474 AATKQ6ZMQ8 1374 aa13.13□□□□□ -0.31
HDAC3-215ENST00000519474 TCP11L2Q8N4U5 519 aa13.13□□□□□ -0.31
HDAC3-215ENST00000519474 USP31Q70CQ4 1352 aa13.12□□□□□ -0.31
HDAC3-215ENST00000519474 SOX12O15370 315 aa13.12□□□□□ -0.31
HDAC3-215ENST00000519474 TMF1P82094 1093 aa13.12□□□□□ -0.31
HDAC3-215ENST00000519474 USP47Q96K76 1375 aa13.11□□□□□ -0.31
HDAC3-215ENST00000519474 DEFB132Q7Z7B7 95 aa13.11□□□□□ -0.31
HDAC3-215ENST00000519474 THRAP3Q9Y2W1 955 aaKnown RBP13.11□□□□□ -0.31
HDAC3-215ENST00000519474 NRKQ7Z2Y5 1582 aa13.11□□□□□ -0.31
HDAC3-215ENST00000519474 AKAP12Q02952 1782 aa13.1□□□□□ -0.31
HDAC3-215ENST00000519474 SLIT3O75094 1523 aa13.1□□□□□ -0.31
HDAC3-215ENST00000519474 A0A1W2PP64 1363 aa13.09□□□□□ -0.31
HDAC3-215ENST00000519474 PIK3C2AO00443 1686 aa13.09□□□□□ -0.31
HDAC3-215ENST00000519474 LMO7Q8WWI1 1683 aa13.08□□□□□ -0.31
HDAC3-215ENST00000519474 BLMP54132 1417 aaPredicted RBP13.08□□□□□ -0.32
HDAC3-215ENST00000519474 FBLN1P23142 703 aa13.08□□□□□ -0.32
HDAC3-215ENST00000519474 TOM1L2Q6ZVM7 507 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms