RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 PIK3R4Q99570 1358 aa10.76□□□□□ -0.69
LIMCH1-219ENST00000514096 SYTL4Q96C24 671 aaPredicted RBP10.76□□□□□ -0.69
LIMCH1-219ENST00000514096 FAM83GA6ND36 823 aa10.75□□□□□ -0.69
LIMCH1-219ENST00000514096 USHBP1Q8N6Y0 703 aa10.75□□□□□ -0.69
LIMCH1-219ENST00000514096 ROBO1Q9Y6N7 1651 aa10.75□□□□□ -0.69
LIMCH1-219ENST00000514096 DEKP35659 375 aaKnown RBP10.75□□□□□ -0.69
LIMCH1-219ENST00000514096 AMPHP49418 695 aa10.74□□□□□ -0.69
LIMCH1-219ENST00000514096 PPIP5K1Q6PFW1 1433 aa10.74□□□□□ -0.69
LIMCH1-219ENST00000514096 UTRNP46939 3433 aa10.74□□□□□ -0.69
LIMCH1-219ENST00000514096 NKTRP30414 1462 aaKnown RBP10.74□□□□□ -0.69
LIMCH1-219ENST00000514096 FAM135BQ49AJ0 1406 aa10.73□□□□□ -0.69
LIMCH1-219ENST00000514096 PDIA4P13667 645 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-219ENST00000514096 NLRP13Q86W25 1043 aa10.73□□□□□ -0.69
LIMCH1-219ENST00000514096 KTN1Q86UP2 1357 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-219ENST00000514096 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.73□□□□□ -0.69
LIMCH1-219ENST00000514096 GCP02774 474 aa10.72□□□□□ -0.69
LIMCH1-219ENST00000514096 DDX10Q13206 875 aaKnown RBP10.72□□□□□ -0.69
LIMCH1-219ENST00000514096 DDX54Q8TDD1 881 aaKnown RBP10.72□□□□□ -0.69
LIMCH1-219ENST00000514096 TERF2IPQ9NYB0 399 aa10.72□□□□□ -0.69
LIMCH1-219ENST00000514096 SPATA31A3Q5VYP0 1347 aa10.72□□□□□ -0.69
LIMCH1-219ENST00000514096 EIF3AQ14152 1382 aaKnown RBP10.72□□□□□ -0.69
LIMCH1-219ENST00000514096 C11orf95C9JLR9 678 aaPredicted RBP10.72□□□□□ -0.69
LIMCH1-219ENST00000514096 LARP1Q6PKG0 1096 aaKnown RBP10.71□□□□□ -0.69
LIMCH1-219ENST00000514096 NRXN3Q9Y4C0 1643 aa10.71□□□□□ -0.69
LIMCH1-219ENST00000514096 KIAA0232Q92628 1395 aa10.71□□□□□ -0.69
LIMCH1-219ENST00000514096 ASXL1Q8IXJ9 1541 aa10.71□□□□□ -0.69
LIMCH1-219ENST00000514096 ZNF772Q68DY9 489 aaPredicted RBP10.71□□□□□ -0.69
LIMCH1-219ENST00000514096 PANK3Q9H999 370 aa10.71□□□□□ -0.7
LIMCH1-219ENST00000514096 CHD2O14647 1828 aaKnown RBP10.7□□□□□ -0.7
LIMCH1-219ENST00000514096 BCL11BQ9C0K0 894 aaPredicted RBP10.7□□□□□ -0.7
LIMCH1-219ENST00000514096 DEFB132Q7Z7B7 95 aa10.7□□□□□ -0.7
LIMCH1-219ENST00000514096 ACSBG1Q96GR2 724 aa10.7□□□□□ -0.7
LIMCH1-219ENST00000514096 COG3Q96JB2 828 aa10.7□□□□□ -0.7
LIMCH1-219ENST00000514096 PNPLA6Q8IY17 1366 aa10.69□□□□□ -0.7
LIMCH1-219ENST00000514096 SOS2Q07890 1332 aaPredicted RBP10.69□□□□□ -0.7
LIMCH1-219ENST00000514096 PPLO60437 1756 aa10.69□□□□□ -0.7
LIMCH1-219ENST00000514096 PDE3BQ13370 1112 aa10.69□□□□□ -0.7
LIMCH1-219ENST00000514096 VSIG10Q8N0Z9 540 aa10.69□□□□□ -0.7
LIMCH1-219ENST00000514096 TRPC5Q9UL62 973 aaPredicted RBP10.68□□□□□ -0.7
LIMCH1-219ENST00000514096 SETBP1Q9Y6X0 1596 aa10.68□□□□□ -0.7
LIMCH1-219ENST00000514096 SEPT12Q8IYM1 358 aa10.68□□□□□ -0.7
LIMCH1-219ENST00000514096 TTC21BQ7Z4L5 1316 aa10.68□□□□□ -0.7
LIMCH1-219ENST00000514096 KCNA4P22459 653 aa10.68□□□□□ -0.7
LIMCH1-219ENST00000514096 STAC3Q96MF2 364 aa10.67□□□□□ -0.7
LIMCH1-219ENST00000514096 AXIN2Q9Y2T1 843 aa10.67□□□□□ -0.7
LIMCH1-219ENST00000514096 KNSTRNQ9Y448 316 aa10.67□□□□□ -0.7
LIMCH1-219ENST00000514096 PHLPP1O60346 1717 aa10.67□□□□□ -0.7
LIMCH1-219ENST00000514096 PTCH1Q13635 1447 aa10.67□□□□□ -0.7
LIMCH1-219ENST00000514096 GLIPR1L2Q4G1C9 344 aa10.67□□□□□ -0.7
LIMCH1-219ENST00000514096 SPATA31A6Q5VVP1 1343 aa10.66□□□□□ -0.7
LIMCH1-219ENST00000514096 SF3B2Q13435 895 aaKnown RBP10.66□□□□□ -0.7
LIMCH1-219ENST00000514096 EMILIN1Q9Y6C2 1016 aa10.66□□□□□ -0.7
LIMCH1-219ENST00000514096 DIP2AQ14689 1571 aa10.66□□□□□ -0.7
LIMCH1-219ENST00000514096 KCNQ4P56696 695 aa10.66□□□□□ -0.7
LIMCH1-219ENST00000514096 DIEXFQ68CQ4 756 aaKnown RBP10.66□□□□□ -0.7
LIMCH1-219ENST00000514096 TESK2Q96S53 571 aa10.66□□□□□ -0.7
LIMCH1-219ENST00000514096 UNC5CLQ8IV45 518 aa10.66□□□□□ -0.7
LIMCH1-219ENST00000514096 GJD4Q96KN9 370 aaPredicted RBP10.66□□□□□ -0.7
LIMCH1-219ENST00000514096 LRP6O75581 1613 aa10.65□□□□□ -0.7
LIMCH1-219ENST00000514096 PSDA5PKW4 1024 aaPredicted RBP10.65□□□□□ -0.7
LIMCH1-219ENST00000514096 TRIM37O94972 964 aa10.65□□□□□ -0.7
LIMCH1-219ENST00000514096 RBM6P78332 1123 aaKnown RBP10.65□□□□□ -0.7
LIMCH1-219ENST00000514096 RGPD8O14715 1765 aaPredicted RBP10.65□□□□□ -0.7
LIMCH1-219ENST00000514096 NALCNQ8IZF0 1738 aa10.65□□□□□ -0.71
LIMCH1-219ENST00000514096 U2SURPO15042 1029 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-219ENST00000514096 MORC1Q86VD1 984 aa10.64□□□□□ -0.71
LIMCH1-219ENST00000514096 XIRP1Q702N8 1843 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-219ENST00000514096 MYOM2P54296 1465 aa10.64□□□□□ -0.71
LIMCH1-219ENST00000514096 WWC3Q9ULE0 1092 aa10.64□□□□□ -0.71
LIMCH1-219ENST00000514096 TULP1O00294 542 aaPredicted RBP10.63□□□□□ -0.71
LIMCH1-219ENST00000514096 HSP90AB2PQ58FF8 381 aa10.63□□□□□ -0.71
LIMCH1-219ENST00000514096 SOCS7O14512 581 aa10.63□□□□□ -0.71
LIMCH1-219ENST00000514096 NBR1Q14596 966 aa10.62□□□□□ -0.71
LIMCH1-219ENST00000514096 CDCA8Q53HL2 280 aa10.62□□□□□ -0.71
LIMCH1-219ENST00000514096 ZNF692Q9BU19 519 aaPredicted RBP10.62□□□□□ -0.71
LIMCH1-219ENST00000514096 A0A1W2PP64 1363 aa10.62□□□□□ -0.71
LIMCH1-219ENST00000514096 MSH5O43196 834 aa10.62□□□□□ -0.71
LIMCH1-219ENST00000514096 CARD14Q9BXL6 1004 aa10.62□□□□□ -0.71
LIMCH1-219ENST00000514096 TSHZ2Q9NRE2 1034 aa10.62□□□□□ -0.71
LIMCH1-219ENST00000514096 MED1Q15648 1581 aaPredicted RBP10.61□□□□□ -0.71
LIMCH1-219ENST00000514096 HMOX1P09601 288 aa10.61□□□□□ -0.71
LIMCH1-219ENST00000514096 PLEKHG3A1L390 1219 aa10.61□□□□□ -0.71
LIMCH1-219ENST00000514096 EN1Q05925 392 aaPredicted RBP10.61□□□□□ -0.71
LIMCH1-219ENST00000514096 ADGRB1O14514 1584 aa10.61□□□□□ -0.71
LIMCH1-219ENST00000514096 KDM5AP29375 1690 aaKnown RBP10.61□□□□□ -0.71
LIMCH1-219ENST00000514096 TNS3Q68CZ2 1445 aa10.61□□□□□ -0.71
LIMCH1-219ENST00000514096 ANKRD24Q8TF21 1146 aa10.61□□□□□ -0.71
LIMCH1-219ENST00000514096 SIRT1Q96EB6 747 aa10.61□□□□□ -0.71
LIMCH1-219ENST00000514096 FYB1O15117 783 aa10.6□□□□□ -0.71
LIMCH1-219ENST00000514096 PPP1R1BQ9UD71 204 aaPredicted RBP10.6□□□□□ -0.71
LIMCH1-219ENST00000514096 KRT27Q7Z3Y8 459 aa10.6□□□□□ -0.71
LIMCH1-219ENST00000514096 ATAD2Q6PL18 1390 aa10.6□□□□□ -0.71
LIMCH1-219ENST00000514096 NEUROD2Q15784 382 aa10.59□□□□□ -0.71
LIMCH1-219ENST00000514096 ARHGEF10O15013 1369 aa10.59□□□□□ -0.71
LIMCH1-219ENST00000514096 PTF1AQ7RTS3 328 aa10.59□□□□□ -0.71
LIMCH1-219ENST00000514096 KIF7Q2M1P5 1343 aa10.59□□□□□ -0.71
LIMCH1-219ENST00000514096 APBA3O96018 575 aa10.58□□□□□ -0.72
LIMCH1-219ENST00000514096 DDB1Q16531 1140 aa10.58□□□□□ -0.72
LIMCH1-219ENST00000514096 XRN1Q8IZH2 1706 aaKnown RBP10.58□□□□□ -0.72
LIMCH1-219ENST00000514096 DHX37Q8IY37 1157 aaKnown RBP10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms