RNA–Protein interactions for RNA: ENST00000495688.5

PTPN7-217, Transcript of protein tyrosine phosphatase, non-receptor type 7, humanhuman

TSL 1 (best)

Gene PTPN7, Length 2,689 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN7-217ENST00000495688 UPF2Q9HAU5 1272 aaKnown RBP16.57■□□□□ 0.24
PTPN7-217ENST00000495688 NOB1Q9ULX3 412 aaKnown RBP16.57■□□□□ 0.24
PTPN7-217ENST00000495688 COL3A1P02461 1466 aaPredicted RBP16.57■□□□□ 0.24
PTPN7-217ENST00000495688 RIPK4P57078 832 aa16.56■□□□□ 0.24
PTPN7-217ENST00000495688 SPRYD3Q8NCJ5 442 aa16.56■□□□□ 0.24
PTPN7-217ENST00000495688 TBC1D2Q9BYX2 928 aa16.56■□□□□ 0.24
PTPN7-217ENST00000495688 POGKQ9P215 609 aa16.56■□□□□ 0.24
PTPN7-217ENST00000495688 DIP2CQ9Y2E4 1556 aa16.56■□□□□ 0.24
PTPN7-217ENST00000495688 YEATS2Q9ULM3 1422 aa16.55■□□□□ 0.24
PTPN7-217ENST00000495688 PTPRMP28827 1452 aa16.55■□□□□ 0.24
PTPN7-217ENST00000495688 CD163L1Q9NR16 1453 aa16.55■□□□□ 0.24
PTPN7-217ENST00000495688 NCBP3Q53F19 620 aaKnown RBP16.55■□□□□ 0.24
PTPN7-217ENST00000495688 FBXO31Q5XUX0 539 aaPredicted RBP16.55■□□□□ 0.24
PTPN7-217ENST00000495688 ATF7IPQ6VMQ6 1270 aa16.55■□□□□ 0.24
PTPN7-217ENST00000495688 ANTXR1Q9H6X2 564 aa16.55■□□□□ 0.24
PTPN7-217ENST00000495688 TMEM57Q8N5G2 664 aa16.54■□□□□ 0.24
PTPN7-217ENST00000495688 TERF2IPQ9NYB0 399 aa16.54■□□□□ 0.24
PTPN7-217ENST00000495688 OSCARQ8IYS5 282 aa16.53■□□□□ 0.24
PTPN7-217ENST00000495688 CABP1Q9NZU7 370 aa16.53■□□□□ 0.24
PTPN7-217ENST00000495688 SLC52A1Q9NWF4 448 aa16.53■□□□□ 0.24
PTPN7-217ENST00000495688 DIAPH1O60610 1272 aaKnown RBP16.53■□□□□ 0.24
PTPN7-217ENST00000495688 CT47B1P0C2W7 299 aaPredicted RBP16.53■□□□□ 0.24
PTPN7-217ENST00000495688 ANO8Q9HCE9 1232 aaPredicted RBP16.53■□□□□ 0.24
PTPN7-217ENST00000495688 MFAP1P55081 439 aaKnown RBP16.52■□□□□ 0.24
PTPN7-217ENST00000495688 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.52■□□□□ 0.23
PTPN7-217ENST00000495688 CDK19Q9BWU1 502 aa16.52■□□□□ 0.23
PTPN7-217ENST00000495688 DDX19BQ9UMR2 479 aa16.52■□□□□ 0.23
PTPN7-217ENST00000495688 ARHGAP31Q2M1Z3 1444 aa16.51■□□□□ 0.23
PTPN7-217ENST00000495688 YTHDC2Q9H6S0 1430 aaKnown RBP16.51■□□□□ 0.23
PTPN7-217ENST00000495688 ZMYM3Q14202 1370 aa16.51■□□□□ 0.23
PTPN7-217ENST00000495688 ATAD2Q6PL18 1390 aa16.51■□□□□ 0.23
PTPN7-217ENST00000495688 ZFYVE9O95405 1425 aa16.5■□□□□ 0.23
PTPN7-217ENST00000495688 HDAC1Q13547 482 aaPredicted RBP16.5■□□□□ 0.23
PTPN7-217ENST00000495688 NEO1Q92859 1461 aa16.49■□□□□ 0.23
PTPN7-217ENST00000495688 ZBTB40Q9NUA8 1239 aa16.49■□□□□ 0.23
PTPN7-217ENST00000495688 TMEM131LA2VDJ0 1609 aa16.49■□□□□ 0.23
PTPN7-217ENST00000495688 THUMPD2Q9BTF0 503 aaKnown RBP16.49■□□□□ 0.23
PTPN7-217ENST00000495688 HDGFL2Q7Z4V5 671 aaPredicted RBP16.48■□□□□ 0.23
PTPN7-217ENST00000495688 C22orf23Q9BZE7 217 aa16.48■□□□□ 0.23
PTPN7-217ENST00000495688 PRKAR2BP31323 418 aa16.48■□□□□ 0.23
PTPN7-217ENST00000495688 WAPLQ7Z5K2 1190 aa16.48■□□□□ 0.23
PTPN7-217ENST00000495688 IL16Q14005 1332 aa16.47■□□□□ 0.23
PTPN7-217ENST00000495688 HMOX1P09601 288 aa16.47■□□□□ 0.23
PTPN7-217ENST00000495688 SMC5Q8IY18 1101 aa16.47■□□□□ 0.23
PTPN7-217ENST00000495688 PNPLA6Q8IY17 1366 aa16.47■□□□□ 0.23
PTPN7-217ENST00000495688 PREX1Q8TCU6 1659 aa16.46■□□□□ 0.23
PTPN7-217ENST00000495688 PHACTR3Q96KR7 559 aa16.46■□□□□ 0.23
PTPN7-217ENST00000495688 RICTORQ6R327 1708 aa16.46■□□□□ 0.23
PTPN7-217ENST00000495688 ANKRD26Q9UPS8 1709 aa16.46■□□□□ 0.23
PTPN7-217ENST00000495688 LNPKQ9C0E8 428 aa16.46■□□□□ 0.23
PTPN7-217ENST00000495688 POLKQ9UBT6 870 aa16.46■□□□□ 0.23
PTPN7-217ENST00000495688 LRRC7Q96NW7 1537 aa16.45■□□□□ 0.22
PTPN7-217ENST00000495688 STAG3Q9UJ98 1225 aa16.45■□□□□ 0.22
PTPN7-217ENST00000495688 MED14O60244 1454 aa16.45■□□□□ 0.22
PTPN7-217ENST00000495688 RSPH6AQ9H0K4 717 aa16.45■□□□□ 0.22
PTPN7-217ENST00000495688 ARHGEF40Q8TER5 1519 aa16.45■□□□□ 0.22
PTPN7-217ENST00000495688 ELL2O00472 640 aaPredicted RBP16.44■□□□□ 0.22
PTPN7-217ENST00000495688 KIF16BQ96L93 1317 aa16.44■□□□□ 0.22
PTPN7-217ENST00000495688 FCHSD2O94868 740 aa16.44■□□□□ 0.22
PTPN7-217ENST00000495688 ALKQ9UM73 1620 aa16.44■□□□□ 0.22
PTPN7-217ENST00000495688 ARXQ96QS3 562 aa16.43■□□□□ 0.22
PTPN7-217ENST00000495688 C1orf115Q9H7X2 142 aa16.43■□□□□ 0.22
PTPN7-217ENST00000495688 CLTCQ00610 1675 aaKnown RBP16.43■□□□□ 0.22
PTPN7-217ENST00000495688 IPO8O15397 1037 aaKnown RBP16.43■□□□□ 0.22
PTPN7-217ENST00000495688 TSPYL6Q8N831 410 aa16.43■□□□□ 0.22
PTPN7-217ENST00000495688 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.42■□□□□ 0.22
PTPN7-217ENST00000495688 EMILIN1Q9Y6C2 1016 aa16.42■□□□□ 0.22
PTPN7-217ENST00000495688 ZRANB1Q9UGI0 708 aa16.42■□□□□ 0.22
PTPN7-217ENST00000495688 NUCB1Q02818 461 aa16.41■□□□□ 0.22
PTPN7-217ENST00000495688 FAM135BQ49AJ0 1406 aa16.41■□□□□ 0.22
PTPN7-217ENST00000495688 ALDH1L2Q3SY69 923 aa16.41■□□□□ 0.22
PTPN7-217ENST00000495688 PNNQ9H307 717 aaKnown RBP16.41■□□□□ 0.22
PTPN7-217ENST00000495688 KIF20BQ96Q89 1820 aa16.4■□□□□ 0.22
PTPN7-217ENST00000495688 CHD1LQ86WJ1 897 aa16.39■□□□□ 0.21
PTPN7-217ENST00000495688 GZF1Q9H116 711 aaPredicted RBP16.39■□□□□ 0.21
PTPN7-217ENST00000495688 NCKAP5LQ9HCH0 1330 aa16.39■□□□□ 0.21
PTPN7-217ENST00000495688 VAMP4O75379 141 aa16.39■□□□□ 0.21
PTPN7-217ENST00000495688 NME9Q86XW9 330 aa16.39■□□□□ 0.21
PTPN7-217ENST00000495688 MAP2P11137 1827 aaKnown RBP16.39■□□□□ 0.21
PTPN7-217ENST00000495688 ZBTB7BO15156 539 aaPredicted RBP16.38■□□□□ 0.21
PTPN7-217ENST00000495688 NFE2L2Q16236 605 aa16.38■□□□□ 0.21
PTPN7-217ENST00000495688 MCM4P33991 863 aa16.38■□□□□ 0.21
PTPN7-217ENST00000495688 ANKRD45Q5TZF3 282 aa16.37■□□□□ 0.21
PTPN7-217ENST00000495688 PPIP5K1Q6PFW1 1433 aa16.37■□□□□ 0.21
PTPN7-217ENST00000495688 MRPL50Q8N5N7 158 aaKnown RBP16.37■□□□□ 0.21
PTPN7-217ENST00000495688 MBIPQ9NS73 344 aa16.36■□□□□ 0.21
PTPN7-217ENST00000495688 FAM83GA6ND36 823 aa16.36■□□□□ 0.21
PTPN7-217ENST00000495688 CDC42BPGQ6DT37 1551 aa16.36■□□□□ 0.21
PTPN7-217ENST00000495688 RRS1Q15050 365 aaKnown RBP16.35■□□□□ 0.21
PTPN7-217ENST00000495688 SIRT2Q8IXJ6 389 aa16.35■□□□□ 0.21
PTPN7-217ENST00000495688 CHMP5Q9NZZ3 219 aa16.35■□□□□ 0.21
PTPN7-217ENST00000495688 IL13P35225 146 aa16.35■□□□□ 0.21
PTPN7-217ENST00000495688 HSCBQ8IWL3 235 aa16.35■□□□□ 0.21
PTPN7-217ENST00000495688 MLECQ14165 292 aa16.34■□□□□ 0.21
PTPN7-217ENST00000495688 DCTN1Q14203 1278 aa16.34■□□□□ 0.21
PTPN7-217ENST00000495688 C8orf58Q8NAV2 365 aa16.34■□□□□ 0.21
PTPN7-217ENST00000495688 ZNF692Q9BU19 519 aaPredicted RBP16.33■□□□□ 0.21
PTPN7-217ENST00000495688 RBM25P49756 843 aaKnown RBP16.33■□□□□ 0.2
PTPN7-217ENST00000495688 BRPF1P55201 1214 aaPredicted RBP16.33■□□□□ 0.2
PTPN7-217ENST00000495688 GNAI1P63096 354 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 137.7 ms