RNA–Protein interactions for RNA: ENST00000495100.1

GPC1-209, Transcript of glypican 1, humanhuman

TSL 1 (best)

Gene GPC1, Length 3,525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-209ENST00000495100 STAC3Q96MF2 364 aa16.78■□□□□ 0.28
GPC1-209ENST00000495100 MAP4K4O95819 1239 aaPredicted RBP16.76■□□□□ 0.27
GPC1-209ENST00000495100 ERVK-7P63135 1459 aa16.76■□□□□ 0.27
GPC1-209ENST00000495100 FOXO3O43524 673 aa16.76■□□□□ 0.27
GPC1-209ENST00000495100 CHD1LQ86WJ1 897 aa16.76■□□□□ 0.27
GPC1-209ENST00000495100 PNNQ9H307 717 aaKnown RBP16.76■□□□□ 0.27
GPC1-209ENST00000495100 ADCY10Q96PN6 1610 aa16.76■□□□□ 0.27
GPC1-209ENST00000495100 TRHP20396 242 aaPredicted RBP16.76■□□□□ 0.27
GPC1-209ENST00000495100 USHBP1Q8N6Y0 703 aa16.76■□□□□ 0.27
GPC1-209ENST00000495100 POLKQ9UBT6 870 aa16.76■□□□□ 0.27
GPC1-209ENST00000495100 MAST1Q9Y2H9 1570 aa16.75■□□□□ 0.27
GPC1-209ENST00000495100 TRAK2O60296 914 aa16.75■□□□□ 0.27
GPC1-209ENST00000495100 XPCQ01831 940 aaPredicted RBP16.75■□□□□ 0.27
GPC1-209ENST00000495100 SLC4A2P04920 1241 aa16.75■□□□□ 0.27
GPC1-209ENST00000495100 MBIPQ9NS73 344 aa16.75■□□□□ 0.27
GPC1-209ENST00000495100 PTPRTO14522 1441 aa16.74■□□□□ 0.27
GPC1-209ENST00000495100 TRPM1Q7Z4N2 1603 aa16.74■□□□□ 0.27
GPC1-209ENST00000495100 HSP90AB2PQ58FF8 381 aa16.74■□□□□ 0.27
GPC1-209ENST00000495100 OTUD7AQ8TE49 926 aaPredicted RBP16.74■□□□□ 0.27
GPC1-209ENST00000495100 NUDT16Q96DE0 195 aaKnown RBP16.74■□□□□ 0.27
GPC1-209ENST00000495100 LARP6Q9BRS8 491 aaKnown RBP16.74■□□□□ 0.27
GPC1-209ENST00000495100 TRMT2AQ8IZ69 625 aaKnown RBP16.74■□□□□ 0.27
GPC1-209ENST00000495100 NGEFQ8N5V2 710 aa16.74■□□□□ 0.27
GPC1-209ENST00000495100 CHAMP1Q96JM3 812 aa16.74■□□□□ 0.27
GPC1-209ENST00000495100 EXOC6BQ9Y2D4 811 aa16.74■□□□□ 0.27
GPC1-209ENST00000495100 OS9Q13438 667 aaPredicted RBP16.73■□□□□ 0.27
GPC1-209ENST00000495100 TBC1D32Q96NH3 1257 aa16.73■□□□□ 0.27
GPC1-209ENST00000495100 KIF16BQ96L93 1317 aa16.73■□□□□ 0.27
GPC1-209ENST00000495100 PIK3C2GO75747 1445 aa16.73■□□□□ 0.27
GPC1-209ENST00000495100 A0A0G2JS52 829 aa16.73■□□□□ 0.27
GPC1-209ENST00000495100 FKBP5Q13451 457 aaPredicted RBP16.73■□□□□ 0.27
GPC1-209ENST00000495100 TSPYL4Q9UJ04 414 aa16.72■□□□□ 0.27
GPC1-209ENST00000495100 CHMP5Q9NZZ3 219 aa16.71■□□□□ 0.27
GPC1-209ENST00000495100 NPATQ14207 1427 aa16.71■□□□□ 0.27
GPC1-209ENST00000495100 CHD1O14646 1710 aa16.71■□□□□ 0.27
GPC1-209ENST00000495100 DDX49Q9Y6V7 483 aaKnown RBP16.71■□□□□ 0.27
GPC1-209ENST00000495100 ARHGEF5Q12774 1597 aa16.71■□□□□ 0.27
GPC1-209ENST00000495100 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.71■□□□□ 0.27
GPC1-209ENST00000495100 GNAI1P63096 354 aa16.71■□□□□ 0.27
GPC1-209ENST00000495100 ANP32BQ92688 251 aaKnown RBP16.71■□□□□ 0.27
GPC1-209ENST00000495100 POLR3AO14802 1390 aaPredicted RBP16.71■□□□□ 0.26
GPC1-209ENST00000495100 PRDM15P57071 1507 aaPredicted RBP16.7■□□□□ 0.26
GPC1-209ENST00000495100 MCM4P33991 863 aa16.7■□□□□ 0.26
GPC1-209ENST00000495100 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.7■□□□□ 0.26
GPC1-209ENST00000495100 DDX54Q8TDD1 881 aaKnown RBP16.7■□□□□ 0.26
GPC1-209ENST00000495100 SLC52A1Q9NWF4 448 aa16.7■□□□□ 0.26
GPC1-209ENST00000495100 PREX2Q70Z35 1606 aa16.7■□□□□ 0.26
GPC1-209ENST00000495100 CROCC2H7BZ55 1655 aa16.7■□□□□ 0.26
GPC1-209ENST00000495100 MCTP1Q6DN14 999 aa16.7■□□□□ 0.26
GPC1-209ENST00000495100 USP19O94966 1318 aa16.7■□□□□ 0.26
GPC1-209ENST00000495100 ANXA1P04083 346 aa16.69■□□□□ 0.26
GPC1-209ENST00000495100 NLRP6P59044 892 aa16.69■□□□□ 0.26
GPC1-209ENST00000495100 NFE2L2Q16236 605 aa16.69■□□□□ 0.26
GPC1-209ENST00000495100 IL1RAPL2Q9NP60 686 aa16.69■□□□□ 0.26
GPC1-209ENST00000495100 RTEL1-TNFRSF6BF6WH68 1400 aa16.69■□□□□ 0.26
GPC1-209ENST00000495100 GOLGA6L22H0YM25 854 aa16.69■□□□□ 0.26
GPC1-209ENST00000495100 ATP7AQ04656 1500 aa16.68■□□□□ 0.26
GPC1-209ENST00000495100 FCHSD2O94868 740 aa16.67■□□□□ 0.26
GPC1-209ENST00000495100 RNF214Q8ND24 703 aa16.67■□□□□ 0.26
GPC1-209ENST00000495100 STK31Q9BXU1 1019 aa16.67■□□□□ 0.26
GPC1-209ENST00000495100 INSRP06213 1382 aa16.67■□□□□ 0.26
GPC1-209ENST00000495100 TBC1D9Q6ZT07 1266 aa16.66■□□□□ 0.26
GPC1-209ENST00000495100 SSFA2P28290 1259 aa16.66■□□□□ 0.26
GPC1-209ENST00000495100 ANO2Q9NQ90 1003 aa16.66■□□□□ 0.26
GPC1-209ENST00000495100 CASC1Q6TDU7 716 aa16.66■□□□□ 0.26
GPC1-209ENST00000495100 MEIS3Q99687 375 aa16.66■□□□□ 0.26
GPC1-209ENST00000495100 ANKRD36BQ8N2N9 1353 aa16.66■□□□□ 0.26
GPC1-209ENST00000495100 MYO5CQ9NQX4 1742 aa16.65■□□□□ 0.26
GPC1-209ENST00000495100 ZBTB40Q9NUA8 1239 aa16.65■□□□□ 0.26
GPC1-209ENST00000495100 CHMP3Q9Y3E7 222 aa16.65■□□□□ 0.26
GPC1-209ENST00000495100 VAMP4O75379 141 aa16.65■□□□□ 0.26
GPC1-209ENST00000495100 L1TD1Q5T7N2 865 aaKnown RBP16.65■□□□□ 0.26
GPC1-209ENST00000495100 CLTCL1P53675 1640 aa16.64■□□□□ 0.26
GPC1-209ENST00000495100 CD2BP2O95400 341 aaKnown RBP16.64■□□□□ 0.25
GPC1-209ENST00000495100 CCDC61Q9Y6R9 512 aa16.64■□□□□ 0.25
GPC1-209ENST00000495100 CALD1Q05682 793 aaKnown RBP16.64■□□□□ 0.25
GPC1-209ENST00000495100 GBP4Q96PP9 640 aa16.64■□□□□ 0.25
GPC1-209ENST00000495100 ZNF330Q9Y3S2 320 aaPredicted RBP16.64■□□□□ 0.25
GPC1-209ENST00000495100 UPF3BQ9BZI7 483 aaKnown RBP16.63■□□□□ 0.25
GPC1-209ENST00000495100 EIF2AK4Q9P2K8 1649 aaKnown RBP16.63■□□□□ 0.25
GPC1-209ENST00000495100 YEATS2Q9ULM3 1422 aa16.62■□□□□ 0.25
GPC1-209ENST00000495100 WASLO00401 505 aaPredicted RBP16.62■□□□□ 0.25
GPC1-209ENST00000495100 AIMP1Q12904 312 aaKnown RBP16.62■□□□□ 0.25
GPC1-209ENST00000495100 CAVIN1Q6NZI2 390 aaKnown RBP16.62■□□□□ 0.25
GPC1-209ENST00000495100 TNPO1Q92973 898 aaKnown RBP16.62■□□□□ 0.25
GPC1-209ENST00000495100 BCL11BQ9C0K0 894 aaPredicted RBP16.62■□□□□ 0.25
GPC1-209ENST00000495100 RPGRIP1LQ68CZ1 1315 aa16.62■□□□□ 0.25
GPC1-209ENST00000495100 G2E3Q7L622 706 aa16.61■□□□□ 0.25
GPC1-209ENST00000495100 API5Q9BZZ5 524 aaKnown RBP16.61■□□□□ 0.25
GPC1-209ENST00000495100 RSPH6AQ9H0K4 717 aa16.61■□□□□ 0.25
GPC1-209ENST00000495100 KCNJ4P48050 445 aa16.61■□□□□ 0.25
GPC1-209ENST00000495100 NEK4P51957 841 aa16.61■□□□□ 0.25
GPC1-209ENST00000495100 XRCC6P12956 609 aaKnown RBP eCLIP16.6■□□□□ 0.25
GPC1-209ENST00000495100 ABCC1P33527 1531 aa16.6■□□□□ 0.25
GPC1-209ENST00000495100 PLEKHF1Q96S99 279 aa16.6■□□□□ 0.25
GPC1-209ENST00000495100 PTMAP06454 111 aaKnown RBP16.6■□□□□ 0.25
GPC1-209ENST00000495100 ZCCHC11Q5TAX3 1644 aaKnown RBP16.6■□□□□ 0.25
GPC1-209ENST00000495100 PRPF40AO75400 957 aaKnown RBP16.59■□□□□ 0.25
GPC1-209ENST00000495100 ABTB2Q8N961 1025 aa16.59■□□□□ 0.25
GPC1-209ENST00000495100 NAP1L2Q9ULW6 460 aaPredicted RBP16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms