RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 BRD4O60885 1362 aaPredicted RBP20.08■□□□□ 0.81
BRCA1-223ENST00000494123 LMOD2Q6P5Q4 547 aa20.07■□□□□ 0.8
BRCA1-223ENST00000494123 NRKQ7Z2Y5 1582 aa20.06■□□□□ 0.8
BRCA1-223ENST00000494123 TNS3Q68CZ2 1445 aa20.06■□□□□ 0.8
BRCA1-223ENST00000494123 EDC4Q6P2E9 1401 aaKnown RBP20.06■□□□□ 0.8
BRCA1-223ENST00000494123 PANK3Q9H999 370 aa20.06■□□□□ 0.8
BRCA1-223ENST00000494123 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.05■□□□□ 0.8
BRCA1-223ENST00000494123 SPATA31A3Q5VYP0 1347 aa20.05■□□□□ 0.8
BRCA1-223ENST00000494123 TTC21BQ7Z4L5 1316 aa20.04■□□□□ 0.8
BRCA1-223ENST00000494123 ALS2Q96Q42 1657 aa20.03■□□□□ 0.8
BRCA1-223ENST00000494123 TTC21AQ8NDW8 1320 aa20.03■□□□□ 0.8
BRCA1-223ENST00000494123 ARHGEF10O15013 1369 aa20.03■□□□□ 0.8
BRCA1-223ENST00000494123 SSH2Q76I76 1423 aa20.03■□□□□ 0.8
BRCA1-223ENST00000494123 NSD3Q9BZ95 1437 aa20.03■□□□□ 0.8
BRCA1-223ENST00000494123 ABTB2Q8N961 1025 aa20.02■□□□□ 0.8
BRCA1-223ENST00000494123 CARD14Q9BXL6 1004 aa20.02■□□□□ 0.79
BRCA1-223ENST00000494123 JCADQ9P266 1359 aa20.02■□□□□ 0.79
BRCA1-223ENST00000494123 SHPRHQ149N8 1683 aa20.01■□□□□ 0.79
BRCA1-223ENST00000494123 PIK3C2AO00443 1686 aa20■□□□□ 0.79
BRCA1-223ENST00000494123 PNPLA6Q8IY17 1366 aa19.99■□□□□ 0.79
BRCA1-223ENST00000494123 NUTM2GQ5VZR2 741 aa19.99■□□□□ 0.79
BRCA1-223ENST00000494123 ILDR1Q86SU0 546 aaPredicted RBP19.99■□□□□ 0.79
BRCA1-223ENST00000494123 KNSTRNQ9Y448 316 aa19.99■□□□□ 0.79
BRCA1-223ENST00000494123 KIF20BQ96Q89 1820 aa19.99■□□□□ 0.79
BRCA1-223ENST00000494123 PLEKHG5O94827 1062 aa19.98■□□□□ 0.79
BRCA1-223ENST00000494123 CGNL1Q0VF96 1302 aa19.98■□□□□ 0.79
BRCA1-223ENST00000494123 NLRP6P59044 892 aa19.98■□□□□ 0.79
BRCA1-223ENST00000494123 DDX10Q13206 875 aaKnown RBP19.98■□□□□ 0.79
BRCA1-223ENST00000494123 NME9Q86XW9 330 aa19.98■□□□□ 0.79
BRCA1-223ENST00000494123 COL22A1Q8NFW1 1626 aaPredicted RBP19.97■□□□□ 0.79
BRCA1-223ENST00000494123 NLRP13Q86W25 1043 aa19.96■□□□□ 0.79
BRCA1-223ENST00000494123 HAP1P54257 671 aaPredicted RBP19.95■□□□□ 0.78
BRCA1-223ENST00000494123 MED1Q15648 1581 aaPredicted RBP19.94■□□□□ 0.78
BRCA1-223ENST00000494123 FYB1O15117 783 aa19.93■□□□□ 0.78
BRCA1-223ENST00000494123 COG3Q96JB2 828 aa19.93■□□□□ 0.78
BRCA1-223ENST00000494123 GGNBP2Q9H3C7 697 aa19.93■□□□□ 0.78
BRCA1-223ENST00000494123 SPATA31A6Q5VVP1 1343 aa19.92■□□□□ 0.78
BRCA1-223ENST00000494123 CABLES1Q8TDN4 633 aa19.92■□□□□ 0.78
BRCA1-223ENST00000494123 ZRANB1Q9UGI0 708 aa19.92■□□□□ 0.78
BRCA1-223ENST00000494123 ABCA3Q99758 1704 aa19.92■□□□□ 0.78
BRCA1-223ENST00000494123 USP31Q70CQ4 1352 aa19.92■□□□□ 0.78
BRCA1-223ENST00000494123 USP54Q70EL1 1684 aa19.92■□□□□ 0.78
BRCA1-223ENST00000494123 PHRF1Q9P1Y6 1649 aaKnown RBP19.92■□□□□ 0.78
BRCA1-223ENST00000494123 NUTM2BA6NNL0 878 aaPredicted RBP19.91■□□□□ 0.78
BRCA1-223ENST00000494123 NUTM2EB1AL46 878 aaPredicted RBP19.91■□□□□ 0.78
BRCA1-223ENST00000494123 PER1O15534 1290 aaPredicted RBP19.91■□□□□ 0.78
BRCA1-223ENST00000494123 NUTM2AQ8IVF1 878 aaPredicted RBP19.91■□□□□ 0.78
BRCA1-223ENST00000494123 MARF1Q9Y4F3 1742 aaKnown RBP19.91■□□□□ 0.78
BRCA1-223ENST00000494123 CRYBG1Q9Y4K1 1723 aa19.91■□□□□ 0.78
BRCA1-223ENST00000494123 NSD2O96028 1365 aa19.91■□□□□ 0.78
BRCA1-223ENST00000494123 ANKRD26Q9UPS8 1709 aa19.9■□□□□ 0.78
BRCA1-223ENST00000494123 OVOS2A0A0J9YW53 1432 aa19.9■□□□□ 0.78
BRCA1-223ENST00000494123 OVOS2Q6IE36 1432 aa19.9■□□□□ 0.78
BRCA1-223ENST00000494123 USP19O94966 1318 aa19.89■□□□□ 0.78
BRCA1-223ENST00000494123 SOX12O15370 315 aa19.88■□□□□ 0.77
BRCA1-223ENST00000494123 SLIT3O75094 1523 aa19.88■□□□□ 0.77
BRCA1-223ENST00000494123 CNGB1Q14028 1251 aaPredicted RBP19.87■□□□□ 0.77
BRCA1-223ENST00000494123 AMER1Q5JTC6 1135 aaPredicted RBP19.87■□□□□ 0.77
BRCA1-223ENST00000494123 KCNH5Q8NCM2 988 aa19.87■□□□□ 0.77
BRCA1-223ENST00000494123 GCP02774 474 aa19.87■□□□□ 0.77
BRCA1-223ENST00000494123 CC2D1BQ5T0F9 858 aaKnown RBP19.86■□□□□ 0.77
BRCA1-223ENST00000494123 ADAMTS2O95450 1211 aa19.85■□□□□ 0.77
BRCA1-223ENST00000494123 MEX3CQ5U5Q3 659 aaKnown RBP19.85■□□□□ 0.77
BRCA1-223ENST00000494123 MORC1Q86VD1 984 aa19.85■□□□□ 0.77
BRCA1-223ENST00000494123 LRP6O75581 1613 aa19.84■□□□□ 0.77
BRCA1-223ENST00000494123 NPC1L1Q9UHC9 1359 aa19.84■□□□□ 0.77
BRCA1-223ENST00000494123 ZC3H6P61129 1189 aaKnown RBP19.83■□□□□ 0.76
BRCA1-223ENST00000494123 ZBTB7CA1YPR0 619 aa19.82■□□□□ 0.76
BRCA1-223ENST00000494123 NFAT5O94916 1531 aa19.82■□□□□ 0.76
BRCA1-223ENST00000494123 TNNT2P45379 298 aaPredicted RBP19.81■□□□□ 0.76
BRCA1-223ENST00000494123 KIAA0232Q92628 1395 aa19.8■□□□□ 0.76
BRCA1-223ENST00000494123 PRDM11Q9NQV5 511 aa19.8■□□□□ 0.76
BRCA1-223ENST00000494123 LTN1O94822 1766 aa19.79■□□□□ 0.76
BRCA1-223ENST00000494123 CPDO75976 1380 aa19.78■□□□□ 0.76
BRCA1-223ENST00000494123 C8orf37Q96NL8 207 aa19.78■□□□□ 0.76
BRCA1-223ENST00000494123 FBLN1P23142 703 aa19.77■□□□□ 0.76
BRCA1-223ENST00000494123 COL14A1Q05707 1796 aaKnown RBP19.77■□□□□ 0.76
BRCA1-223ENST00000494123 NGLY1Q96IV0 654 aa19.76■□□□□ 0.75
BRCA1-223ENST00000494123 MAP2P11137 1827 aaKnown RBP19.76■□□□□ 0.75
BRCA1-223ENST00000494123 CHRNA2Q15822 529 aa19.76■□□□□ 0.75
BRCA1-223ENST00000494123 ARHGEF25Q86VW2 580 aa19.76■□□□□ 0.75
BRCA1-223ENST00000494123 AATKQ6ZMQ8 1374 aa19.75■□□□□ 0.75
BRCA1-223ENST00000494123 FAM83GA6ND36 823 aa19.75■□□□□ 0.75
BRCA1-223ENST00000494123 RRS1Q15050 365 aaKnown RBP19.75■□□□□ 0.75
BRCA1-223ENST00000494123 PLCH1Q4KWH8 1693 aa19.74■□□□□ 0.75
BRCA1-223ENST00000494123 MAP3K19Q56UN5 1328 aa19.74■□□□□ 0.75
BRCA1-223ENST00000494123 AMPHP49418 695 aa19.73■□□□□ 0.75
BRCA1-223ENST00000494123 PPM1GO15355 546 aaPredicted RBP19.73■□□□□ 0.75
BRCA1-223ENST00000494123 EMILIN1Q9Y6C2 1016 aa19.72■□□□□ 0.75
BRCA1-223ENST00000494123 PARD3Q8TEW0 1356 aa19.72■□□□□ 0.75
BRCA1-223ENST00000494123 ABCC6O95255 1503 aa19.71■□□□□ 0.75
BRCA1-223ENST00000494123 RALBP1Q15311 655 aa19.71■□□□□ 0.75
BRCA1-223ENST00000494123 BTG4Q9NY30 223 aa19.71■□□□□ 0.75
BRCA1-223ENST00000494123 POLKQ9UBT6 870 aa19.71■□□□□ 0.75
BRCA1-223ENST00000494123 RTL1A6NKG5 1358 aa19.71■□□□□ 0.75
BRCA1-223ENST00000494123 LMO7Q8WWI1 1683 aa19.71■□□□□ 0.75
BRCA1-223ENST00000494123 NWD2Q9ULI1 1742 aa19.71■□□□□ 0.75
BRCA1-223ENST00000494123 COL18A1P39060 1754 aa19.7■□□□□ 0.74
BRCA1-223ENST00000494123 AFF2P51816 1311 aa19.7■□□□□ 0.74
BRCA1-223ENST00000494123 FLT4P35916 1363 aa19.69■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms