RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 ADGRL3Q9HAR2 1447 aa17.93■□□□□ 0.46
UPF3A-210ENST00000493727 METP08581 1390 aa17.92■□□□□ 0.46
UPF3A-210ENST00000493727 LAMC1P11047 1609 aa17.92■□□□□ 0.46
UPF3A-210ENST00000493727 SOX12O15370 315 aa17.92■□□□□ 0.46
UPF3A-210ENST00000493727 C7P10643 843 aa17.92■□□□□ 0.46
UPF3A-210ENST00000493727 RXRBP28702 533 aa17.92■□□□□ 0.46
UPF3A-210ENST00000493727 BBXQ8WY36 941 aaPredicted RBP17.92■□□□□ 0.46
UPF3A-210ENST00000493727 KIF1BO60333 1816 aa17.92■□□□□ 0.46
UPF3A-210ENST00000493727 NEXMIFQ5QGS0 1516 aa17.92■□□□□ 0.46
UPF3A-210ENST00000493727 NAIPQ13075 1403 aa17.91■□□□□ 0.46
UPF3A-210ENST00000493727 AFF2P51816 1311 aa17.91■□□□□ 0.46
UPF3A-210ENST00000493727 RGS12O14924 1447 aa17.9■□□□□ 0.46
UPF3A-210ENST00000493727 IRX5P78411 483 aaPredicted RBP17.9■□□□□ 0.46
UPF3A-210ENST00000493727 METRNQ9UJH8 293 aa17.9■□□□□ 0.46
UPF3A-210ENST00000493727 CLTCL1P53675 1640 aa17.9■□□□□ 0.46
UPF3A-210ENST00000493727 PNPLA6Q8IY17 1366 aa17.9■□□□□ 0.46
UPF3A-210ENST00000493727 NUTM2BA6NNL0 878 aaPredicted RBP17.89■□□□□ 0.45
UPF3A-210ENST00000493727 NUTM2EB1AL46 878 aaPredicted RBP17.89■□□□□ 0.45
UPF3A-210ENST00000493727 ZNF326Q5BKZ1 582 aaKnown RBP17.89■□□□□ 0.45
UPF3A-210ENST00000493727 NUTM2AQ8IVF1 878 aaPredicted RBP17.89■□□□□ 0.45
UPF3A-210ENST00000493727 MFRPQ9BY79 579 aa17.88■□□□□ 0.45
UPF3A-210ENST00000493727 POTEFA5A3E0 1075 aa17.87■□□□□ 0.45
UPF3A-210ENST00000493727 ACIN1Q9UKV3 1341 aaKnown RBP17.87■□□□□ 0.45
UPF3A-210ENST00000493727 RAB3GAP2Q9H2M9 1393 aa17.87■□□□□ 0.45
UPF3A-210ENST00000493727 LRRC59Q96AG4 307 aaKnown RBP17.86■□□□□ 0.45
UPF3A-210ENST00000493727 PHF8Q9UPP1 1060 aa17.86■□□□□ 0.45
UPF3A-210ENST00000493727 EP400Q96L91 3159 aa17.86■□□□□ 0.45
UPF3A-210ENST00000493727 DDX17Q92841 729 aaKnown RBP17.85■□□□□ 0.45
UPF3A-210ENST00000493727 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.85■□□□□ 0.45
UPF3A-210ENST00000493727 COLQQ9Y215 455 aaPredicted RBP17.85■□□□□ 0.45
UPF3A-210ENST00000493727 C1orf167Q5SNV9 1468 aa17.84■□□□□ 0.45
UPF3A-210ENST00000493727 PTCH1Q13635 1447 aa17.84■□□□□ 0.45
UPF3A-210ENST00000493727 PRAG1Q86YV5 1406 aa17.84■□□□□ 0.45
UPF3A-210ENST00000493727 FBXO22Q8NEZ5 403 aa17.84■□□□□ 0.45
UPF3A-210ENST00000493727 OCEL1Q9H607 264 aa17.82■□□□□ 0.44
UPF3A-210ENST00000493727 RBM6P78332 1123 aaKnown RBP17.81■□□□□ 0.44
UPF3A-210ENST00000493727 PDCD7Q8N8D1 485 aaKnown RBP17.81■□□□□ 0.44
UPF3A-210ENST00000493727 C8orf37Q96NL8 207 aa17.81■□□□□ 0.44
UPF3A-210ENST00000493727 COL22A1Q8NFW1 1626 aaPredicted RBP17.8■□□□□ 0.44
UPF3A-210ENST00000493727 NLRP6P59044 892 aa17.8■□□□□ 0.44
UPF3A-210ENST00000493727 MS4A4AQ96JQ5 239 aa17.8■□□□□ 0.44
UPF3A-210ENST00000493727 QTRT2Q9H974 415 aaKnown RBP17.79■□□□□ 0.44
UPF3A-210ENST00000493727 SOS2Q07890 1332 aaPredicted RBP17.78■□□□□ 0.44
UPF3A-210ENST00000493727 SEC24BO95487 1268 aa17.78■□□□□ 0.44
UPF3A-210ENST00000493727 HRCP23327 699 aa17.78■□□□□ 0.44
UPF3A-210ENST00000493727 ROBO2Q9HCK4 1378 aa17.78■□□□□ 0.44
UPF3A-210ENST00000493727 RPGRIP1LQ68CZ1 1315 aa17.77■□□□□ 0.44
UPF3A-210ENST00000493727 PLCG2P16885 1265 aa17.77■□□□□ 0.44
UPF3A-210ENST00000493727 GTPBP6O43824 516 aaPredicted RBP17.76■□□□□ 0.43
UPF3A-210ENST00000493727 PPLO60437 1756 aa17.76■□□□□ 0.43
UPF3A-210ENST00000493727 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.75■□□□□ 0.43
UPF3A-210ENST00000493727 MYOM2P54296 1465 aa17.74■□□□□ 0.43
UPF3A-210ENST00000493727 CDC42BPGQ6DT37 1551 aa17.74■□□□□ 0.43
UPF3A-210ENST00000493727 MARF1Q9Y4F3 1742 aaKnown RBP17.73■□□□□ 0.43
UPF3A-210ENST00000493727 ADAMTS2O95450 1211 aa17.73■□□□□ 0.43
UPF3A-210ENST00000493727 ORAI2Q96SN7 254 aa17.73■□□□□ 0.43
UPF3A-210ENST00000493727 ATAD2Q6PL18 1390 aa17.73■□□□□ 0.43
UPF3A-210ENST00000493727 ATRNO75882 1429 aa17.72■□□□□ 0.43
UPF3A-210ENST00000493727 DPY19L2Q6NUT2 758 aa17.72■□□□□ 0.43
UPF3A-210ENST00000493727 FNBP4Q8N3X1 1017 aaPredicted RBP17.72■□□□□ 0.43
UPF3A-210ENST00000493727 NGLY1Q96IV0 654 aa17.72■□□□□ 0.43
UPF3A-210ENST00000493727 PXDNQ92626 1479 aa17.7■□□□□ 0.42
UPF3A-210ENST00000493727 USP21Q9UK80 565 aa17.7■□□□□ 0.42
UPF3A-210ENST00000493727 RYDENQ9NUL5 291 aaKnown RBP17.69■□□□□ 0.42
UPF3A-210ENST00000493727 TRPC5Q9UL62 973 aaPredicted RBP17.69■□□□□ 0.42
UPF3A-210ENST00000493727 CCDC144AA2RUR9 1427 aa17.69■□□□□ 0.42
UPF3A-210ENST00000493727 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.68■□□□□ 0.42
UPF3A-210ENST00000493727 POTEB2H3BUK9 544 aa17.67■□□□□ 0.42
UPF3A-210ENST00000493727 CCER1Q8TC90 406 aaPredicted RBP17.67■□□□□ 0.42
UPF3A-210ENST00000493727 BCL9LQ86UU0 1499 aa17.67■□□□□ 0.42
UPF3A-210ENST00000493727 SPRYD3Q8NCJ5 442 aa17.66■□□□□ 0.42
UPF3A-210ENST00000493727 PPP1R37O75864 691 aa17.65■□□□□ 0.42
UPF3A-210ENST00000493727 DHX57Q6P158 1386 aaKnown RBP17.65■□□□□ 0.42
UPF3A-210ENST00000493727 TECPR2O15040 1411 aa17.64■□□□□ 0.42
UPF3A-210ENST00000493727 PAXIP1Q6ZW49 1069 aaPredicted RBP17.64■□□□□ 0.41
UPF3A-210ENST00000493727 MPHOSPH9Q99550 1183 aa17.64■□□□□ 0.41
UPF3A-210ENST00000493727 NPHP3Q7Z494 1330 aa17.64■□□□□ 0.41
UPF3A-210ENST00000493727 ANKRD30BQ9BXX2 1392 aa17.64■□□□□ 0.41
UPF3A-210ENST00000493727 KNDC1Q76NI1 1749 aa17.64■□□□□ 0.41
UPF3A-210ENST00000493727 IFT172Q9UG01 1749 aa17.64■□□□□ 0.41
UPF3A-210ENST00000493727 SPATA31E1Q6ZUB1 1445 aa17.61■□□□□ 0.41
UPF3A-210ENST00000493727 GLI3P10071 1580 aa17.61■□□□□ 0.41
UPF3A-210ENST00000493727 FMN2Q9NZ56 1722 aa17.61■□□□□ 0.41
UPF3A-210ENST00000493727 POTEJP0CG39 1038 aa17.6■□□□□ 0.41
UPF3A-210ENST00000493727 CFAP44Q96MT7 982 aa17.6■□□□□ 0.41
UPF3A-210ENST00000493727 KIF1AQ12756 1690 aa17.59■□□□□ 0.41
UPF3A-210ENST00000493727 SLIT2O94813 1529 aa17.59■□□□□ 0.41
UPF3A-210ENST00000493727 ESCO1Q5FWF5 840 aa17.59■□□□□ 0.41
UPF3A-210ENST00000493727 USP32Q8NFA0 1604 aa17.58■□□□□ 0.41
UPF3A-210ENST00000493727 ADGRF5Q8IZF2 1346 aa17.58■□□□□ 0.4
UPF3A-210ENST00000493727 RGL3Q3MIN7 710 aa17.58■□□□□ 0.4
UPF3A-210ENST00000493727 BRWD3Q6RI45 1802 aa17.58■□□□□ 0.4
UPF3A-210ENST00000493727 L3MBTL3Q96JM7 780 aaPredicted RBP17.57■□□□□ 0.4
UPF3A-210ENST00000493727 FOXO3O43524 673 aa17.56■□□□□ 0.4
UPF3A-210ENST00000493727 XPCQ01831 940 aaPredicted RBP17.56■□□□□ 0.4
UPF3A-210ENST00000493727 CCDC125Q86Z20 511 aa17.56■□□□□ 0.4
UPF3A-210ENST00000493727 GJD4Q96KN9 370 aaPredicted RBP17.56■□□□□ 0.4
UPF3A-210ENST00000493727 RALGAPBQ86X10 1494 aa17.56■□□□□ 0.4
UPF3A-210ENST00000493727 LRPPRCP42704 1394 aaKnown RBP17.55■□□□□ 0.4
UPF3A-210ENST00000493727 PLCB2Q00722 1185 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 86.6 ms