RNA–Protein interactions for RNA: ENST00000492462.1

MDC1-207, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 3

Gene MDC1, Length 819 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-207ENST00000492462 HAP1P54257 671 aaPredicted RBP16.88■□□□□ 0.29
MDC1-207ENST00000492462 SRPK2P78362 688 aaKnown RBP16.88■□□□□ 0.29
MDC1-207ENST00000492462 TRPC5Q9UL62 973 aaPredicted RBP16.88■□□□□ 0.29
MDC1-207ENST00000492462 ACEP12821 1306 aa16.88■□□□□ 0.29
MDC1-207ENST00000492462 CRYBG1Q9Y4K1 1723 aa16.87■□□□□ 0.29
MDC1-207ENST00000492462 SLIT2O94813 1529 aa16.87■□□□□ 0.29
MDC1-207ENST00000492462 PAK3O75914 559 aaPredicted RBP16.87■□□□□ 0.29
MDC1-207ENST00000492462 POLR3AO14802 1390 aaPredicted RBP16.87■□□□□ 0.29
MDC1-207ENST00000492462 PLCH1Q4KWH8 1693 aa16.86■□□□□ 0.29
MDC1-207ENST00000492462 PLEKHG3A1L390 1219 aa16.86■□□□□ 0.29
MDC1-207ENST00000492462 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.85■□□□□ 0.29
MDC1-207ENST00000492462 CCDC125Q86Z20 511 aa16.85■□□□□ 0.29
MDC1-207ENST00000492462 PPIP5K1Q6PFW1 1433 aa16.85■□□□□ 0.29
MDC1-207ENST00000492462 FAM83GA6ND36 823 aa16.83■□□□□ 0.28
MDC1-207ENST00000492462 NUTM2GQ5VZR2 741 aa16.83■□□□□ 0.28
MDC1-207ENST00000492462 RALGAPBQ86X10 1494 aa16.83■□□□□ 0.28
MDC1-207ENST00000492462 UNC5CLQ8IV45 518 aa16.83■□□□□ 0.28
MDC1-207ENST00000492462 GLI3P10071 1580 aa16.82■□□□□ 0.28
MDC1-207ENST00000492462 CARD11Q9BXL7 1154 aa16.82■□□□□ 0.28
MDC1-207ENST00000492462 GJD4Q96KN9 370 aaPredicted RBP16.81■□□□□ 0.28
MDC1-207ENST00000492462 CABP1Q9NZU7 370 aa16.81■□□□□ 0.28
MDC1-207ENST00000492462 NWD2Q9ULI1 1742 aa16.81■□□□□ 0.28
MDC1-207ENST00000492462 PHRF1Q9P1Y6 1649 aaKnown RBP16.81■□□□□ 0.28
MDC1-207ENST00000492462 EVC2Q86UK5 1308 aa16.8■□□□□ 0.28
MDC1-207ENST00000492462 NRAPQ86VF7 1730 aa16.79■□□□□ 0.28
MDC1-207ENST00000492462 PCGF6Q9BYE7 350 aa16.79■□□□□ 0.28
MDC1-207ENST00000492462 COL14A1Q05707 1796 aaKnown RBP16.78■□□□□ 0.28
MDC1-207ENST00000492462 YY1P25490 414 aa16.77■□□□□ 0.28
MDC1-207ENST00000492462 BTG4Q9NY30 223 aa16.77■□□□□ 0.28
MDC1-207ENST00000492462 VPS72Q15906 364 aa16.76■□□□□ 0.27
MDC1-207ENST00000492462 ABTB2Q8N961 1025 aa16.76■□□□□ 0.27
MDC1-207ENST00000492462 USP6P35125 1406 aa16.76■□□□□ 0.27
MDC1-207ENST00000492462 KIAA0232Q92628 1395 aa16.76■□□□□ 0.27
MDC1-207ENST00000492462 ZC3H6P61129 1189 aaKnown RBP16.75■□□□□ 0.27
MDC1-207ENST00000492462 CHRNA2Q15822 529 aa16.75■□□□□ 0.27
MDC1-207ENST00000492462 PRDM11Q9NQV5 511 aa16.75■□□□□ 0.27
MDC1-207ENST00000492462 NRKQ7Z2Y5 1582 aa16.75■□□□□ 0.27
MDC1-207ENST00000492462 SBNO2Q9Y2G9 1366 aa16.75■□□□□ 0.27
MDC1-207ENST00000492462 BRWD3Q6RI45 1802 aa16.75■□□□□ 0.27
MDC1-207ENST00000492462 AKAP12Q02952 1782 aa16.74■□□□□ 0.27
MDC1-207ENST00000492462 SSH2Q76I76 1423 aa16.74■□□□□ 0.27
MDC1-207ENST00000492462 CCDC9Q9Y3X0 531 aaKnown RBP16.74■□□□□ 0.27
MDC1-207ENST00000492462 USP19O94966 1318 aa16.72■□□□□ 0.27
MDC1-207ENST00000492462 PIK3C2AO00443 1686 aa16.72■□□□□ 0.27
MDC1-207ENST00000492462 BRD4O60885 1362 aaPredicted RBP16.7■□□□□ 0.26
MDC1-207ENST00000492462 NLRP13Q86W25 1043 aa16.7■□□□□ 0.26
MDC1-207ENST00000492462 SEPT12Q8IYM1 358 aa16.7■□□□□ 0.26
MDC1-207ENST00000492462 CPSF1Q10570 1443 aaKnown RBP16.7■□□□□ 0.26
MDC1-207ENST00000492462 ST20-MTHFSA0A0A6YYL1 179 aa16.69■□□□□ 0.26
MDC1-207ENST00000492462 DEFB132Q7Z7B7 95 aa16.69■□□□□ 0.26
MDC1-207ENST00000492462 TESK2Q96S53 571 aa16.69■□□□□ 0.26
MDC1-207ENST00000492462 TTC21BQ7Z4L5 1316 aa16.69■□□□□ 0.26
MDC1-207ENST00000492462 CD163L1Q9NR16 1453 aa16.68■□□□□ 0.26
MDC1-207ENST00000492462 MON2Q7Z3U7 1717 aa16.68■□□□□ 0.26
MDC1-207ENST00000492462 ONECUT3O60422 494 aaPredicted RBP16.68■□□□□ 0.26
MDC1-207ENST00000492462 GCP02774 474 aa16.68■□□□□ 0.26
MDC1-207ENST00000492462 NLRP6P59044 892 aa16.68■□□□□ 0.26
MDC1-207ENST00000492462 FAM98CQ17RN3 349 aaKnown RBP16.68■□□□□ 0.26
MDC1-207ENST00000492462 BLMP54132 1417 aaPredicted RBP16.68■□□□□ 0.26
MDC1-207ENST00000492462 CAMTA1Q9Y6Y1 1673 aa16.68■□□□□ 0.26
MDC1-207ENST00000492462 SPATA31A5Q5VU36 1347 aa16.68■□□□□ 0.26
MDC1-207ENST00000492462 SPATA31A7Q8IWB4 1347 aa16.68■□□□□ 0.26
MDC1-207ENST00000492462 SLIT3O75094 1523 aa16.67■□□□□ 0.26
MDC1-207ENST00000492462 LMO7Q8WWI1 1683 aa16.67■□□□□ 0.26
MDC1-207ENST00000492462 PSDA5PKW4 1024 aaPredicted RBP16.67■□□□□ 0.26
MDC1-207ENST00000492462 STRN4Q9NRL3 753 aa16.67■□□□□ 0.26
MDC1-207ENST00000492462 CPDO75976 1380 aa16.66■□□□□ 0.26
MDC1-207ENST00000492462 KTN1Q86UP2 1357 aaKnown RBP16.66■□□□□ 0.26
MDC1-207ENST00000492462 TMC1Q8TDI8 760 aa16.66■□□□□ 0.26
MDC1-207ENST00000492462 ZNF692Q9BU19 519 aaPredicted RBP16.66■□□□□ 0.26
MDC1-207ENST00000492462 SLC12A5Q9H2X9 1139 aa16.66■□□□□ 0.26
MDC1-207ENST00000492462 CLSPNQ9HAW4 1339 aa16.65■□□□□ 0.26
MDC1-207ENST00000492462 A0A0G2JS52 829 aa16.64■□□□□ 0.25
MDC1-207ENST00000492462 ZBTB7CA1YPR0 619 aa16.64■□□□□ 0.25
MDC1-207ENST00000492462 MYT1Q01538 1121 aa16.64■□□□□ 0.25
MDC1-207ENST00000492462 SPATA31A1Q5TZJ5 1347 aa16.64■□□□□ 0.25
MDC1-207ENST00000492462 USP47Q96K76 1375 aa16.64■□□□□ 0.25
MDC1-207ENST00000492462 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.63■□□□□ 0.25
MDC1-207ENST00000492462 THSD7AQ9UPZ6 1657 aa16.62■□□□□ 0.25
MDC1-207ENST00000492462 COL18A1P39060 1754 aa16.62■□□□□ 0.25
MDC1-207ENST00000492462 SOX12O15370 315 aa16.62■□□□□ 0.25
MDC1-207ENST00000492462 LARP1Q6PKG0 1096 aaKnown RBP16.62■□□□□ 0.25
MDC1-207ENST00000492462 KRT27Q7Z3Y8 459 aa16.62■□□□□ 0.25
MDC1-207ENST00000492462 TTC21AQ8NDW8 1320 aa16.62■□□□□ 0.25
MDC1-207ENST00000492462 EVA1CP58658 441 aa16.61■□□□□ 0.25
MDC1-207ENST00000492462 NME9Q86XW9 330 aa16.61■□□□□ 0.25
MDC1-207ENST00000492462 USP35Q9P2H5 1018 aa16.61■□□□□ 0.25
MDC1-207ENST00000492462 TIMELESSQ9UNS1 1208 aa16.61■□□□□ 0.25
MDC1-207ENST00000492462 A0A1W2PP64 1363 aa16.61■□□□□ 0.25
MDC1-207ENST00000492462 FAM182BQ5T319 152 aa16.6■□□□□ 0.25
MDC1-207ENST00000492462 CCER1Q8TC90 406 aaPredicted RBP16.6■□□□□ 0.25
MDC1-207ENST00000492462 PUS7Q96PZ0 661 aaKnown RBP16.6■□□□□ 0.25
MDC1-207ENST00000492462 COL5A2P05997 1499 aaPredicted RBP16.6■□□□□ 0.25
MDC1-207ENST00000492462 RGPD5Q99666 1765 aa16.59■□□□□ 0.25
MDC1-207ENST00000492462 SF3B2Q13435 895 aaKnown RBP16.59■□□□□ 0.25
MDC1-207ENST00000492462 NFAT5O94916 1531 aa16.59■□□□□ 0.25
MDC1-207ENST00000492462 HDGFL2Q7Z4V5 671 aaPredicted RBP16.58■□□□□ 0.24
MDC1-207ENST00000492462 AXIN2Q9Y2T1 843 aa16.58■□□□□ 0.24
MDC1-207ENST00000492462 AATKQ6ZMQ8 1374 aa16.58■□□□□ 0.24
MDC1-207ENST00000492462 USP54Q70EL1 1684 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms