RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 CPSF1Q10570 1443 aaKnown RBP22.8■■□□□ 1.24
MSH5-SAPCD1-206ENST00000491552 MARF1Q9Y4F3 1742 aaKnown RBP22.79■■□□□ 1.24
MSH5-SAPCD1-206ENST00000491552 TMC1Q8TDI8 760 aa22.79■■□□□ 1.24
MSH5-SAPCD1-206ENST00000491552 C8orf37Q96NL8 207 aa22.79■■□□□ 1.24
MSH5-SAPCD1-206ENST00000491552 ZNF692Q9BU19 519 aaPredicted RBP22.79■■□□□ 1.24
MSH5-SAPCD1-206ENST00000491552 NINLQ9Y2I6 1382 aa22.78■■□□□ 1.24
MSH5-SAPCD1-206ENST00000491552 PLEKHG5O94827 1062 aa22.78■■□□□ 1.24
MSH5-SAPCD1-206ENST00000491552 HSPA5P11021 654 aaKnown RBP22.78■■□□□ 1.24
MSH5-SAPCD1-206ENST00000491552 HAP1P54257 671 aaPredicted RBP22.78■■□□□ 1.24
MSH5-SAPCD1-206ENST00000491552 CABLES1Q8TDN4 633 aa22.78■■□□□ 1.24
MSH5-SAPCD1-206ENST00000491552 MON2Q7Z3U7 1717 aa22.77■■□□□ 1.24
MSH5-SAPCD1-206ENST00000491552 CRYBG1Q9Y4K1 1723 aa22.77■■□□□ 1.24
MSH5-SAPCD1-206ENST00000491552 NRKQ7Z2Y5 1582 aa22.77■■□□□ 1.24
MSH5-SAPCD1-206ENST00000491552 SSH2Q76I76 1423 aa22.77■■□□□ 1.24
MSH5-SAPCD1-206ENST00000491552 CDCA8Q53HL2 280 aa22.77■■□□□ 1.24
MSH5-SAPCD1-206ENST00000491552 CD163L1Q9NR16 1453 aa22.77■■□□□ 1.24
MSH5-SAPCD1-206ENST00000491552 KTN1Q86UP2 1357 aaKnown RBP22.76■■□□□ 1.23
MSH5-SAPCD1-206ENST00000491552 SLC12A5Q9H2X9 1139 aa22.76■■□□□ 1.23
MSH5-SAPCD1-206ENST00000491552 AFF2P51816 1311 aa22.76■■□□□ 1.23
MSH5-SAPCD1-206ENST00000491552 ABTB2Q8N961 1025 aa22.75■■□□□ 1.23
MSH5-SAPCD1-206ENST00000491552 ZNF772Q68DY9 489 aaPredicted RBP22.74■■□□□ 1.23
MSH5-SAPCD1-206ENST00000491552 HDGFL2Q7Z4V5 671 aaPredicted RBP22.74■■□□□ 1.23
MSH5-SAPCD1-206ENST00000491552 NGLY1Q96IV0 654 aa22.74■■□□□ 1.23
MSH5-SAPCD1-206ENST00000491552 PHRF1Q9P1Y6 1649 aaKnown RBP22.74■■□□□ 1.23
MSH5-SAPCD1-206ENST00000491552 NUTM2GQ5VZR2 741 aa22.73■■□□□ 1.23
MSH5-SAPCD1-206ENST00000491552 TERF2IPQ9NYB0 399 aa22.73■■□□□ 1.23
MSH5-SAPCD1-206ENST00000491552 PIK3C2AO00443 1686 aa22.72■■□□□ 1.23
MSH5-SAPCD1-206ENST00000491552 TTC21BQ7Z4L5 1316 aa22.72■■□□□ 1.23
MSH5-SAPCD1-206ENST00000491552 A0A1W2PP64 1363 aa22.72■■□□□ 1.23
MSH5-SAPCD1-206ENST00000491552 POTEAQ6S8J7 498 aa22.71■■□□□ 1.23
MSH5-SAPCD1-206ENST00000491552 TTC21AQ8NDW8 1320 aa22.71■■□□□ 1.23
MSH5-SAPCD1-206ENST00000491552 EDC4Q6P2E9 1401 aaKnown RBP22.69■■□□□ 1.22
MSH5-SAPCD1-206ENST00000491552 USP19O94966 1318 aa22.69■■□□□ 1.22
MSH5-SAPCD1-206ENST00000491552 ILDR2Q71H61 639 aa22.69■■□□□ 1.22
MSH5-SAPCD1-206ENST00000491552 NLRP13Q86W25 1043 aa22.69■■□□□ 1.22
MSH5-SAPCD1-206ENST00000491552 FNBP4Q8N3X1 1017 aaPredicted RBP22.69■■□□□ 1.22
MSH5-SAPCD1-206ENST00000491552 MYOM1P52179 1685 aa22.68■■□□□ 1.22
MSH5-SAPCD1-206ENST00000491552 ANKRD36BQ8N2N9 1353 aa22.68■■□□□ 1.22
MSH5-SAPCD1-206ENST00000491552 USP21Q9UK80 565 aa22.67■■□□□ 1.22
MSH5-SAPCD1-206ENST00000491552 SLIT2O94813 1529 aa22.67■■□□□ 1.22
MSH5-SAPCD1-206ENST00000491552 PLCH1Q4KWH8 1693 aa22.66■■□□□ 1.22
MSH5-SAPCD1-206ENST00000491552 NLRP6P59044 892 aa22.66■■□□□ 1.22
MSH5-SAPCD1-206ENST00000491552 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.65■■□□□ 1.22
MSH5-SAPCD1-206ENST00000491552 SLIT3O75094 1523 aa22.65■■□□□ 1.22
MSH5-SAPCD1-206ENST00000491552 COL14A1Q05707 1796 aaKnown RBP22.65■■□□□ 1.22
MSH5-SAPCD1-206ENST00000491552 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.64■■□□□ 1.21
MSH5-SAPCD1-206ENST00000491552 NWD2Q9ULI1 1742 aa22.64■■□□□ 1.21
MSH5-SAPCD1-206ENST00000491552 BCL9LQ86UU0 1499 aa22.64■■□□□ 1.21
MSH5-SAPCD1-206ENST00000491552 POLR3GLQ9BT43 218 aa22.63■■□□□ 1.21
MSH5-SAPCD1-206ENST00000491552 USP54Q70EL1 1684 aa22.62■■□□□ 1.21
MSH5-SAPCD1-206ENST00000491552 FAM83GA6ND36 823 aa22.62■■□□□ 1.21
MSH5-SAPCD1-206ENST00000491552 QTRT2Q9H974 415 aaKnown RBP22.62■■□□□ 1.21
MSH5-SAPCD1-206ENST00000491552 PRDM11Q9NQV5 511 aa22.62■■□□□ 1.21
MSH5-SAPCD1-206ENST00000491552 KIAA0232Q92628 1395 aa22.62■■□□□ 1.21
MSH5-SAPCD1-206ENST00000491552 ATRNO75882 1429 aa22.61■■□□□ 1.21
MSH5-SAPCD1-206ENST00000491552 GCP02774 474 aa22.61■■□□□ 1.21
MSH5-SAPCD1-206ENST00000491552 ZC3H6P61129 1189 aaKnown RBP22.61■■□□□ 1.21
MSH5-SAPCD1-206ENST00000491552 TRPC5Q9UL62 973 aaPredicted RBP22.61■■□□□ 1.21
MSH5-SAPCD1-206ENST00000491552 USP31Q70CQ4 1352 aa22.61■■□□□ 1.21
MSH5-SAPCD1-206ENST00000491552 NME9Q86XW9 330 aa22.6■■□□□ 1.21
MSH5-SAPCD1-206ENST00000491552 UNC5CLQ8IV45 518 aa22.59■■□□□ 1.21
MSH5-SAPCD1-206ENST00000491552 CPDO75976 1380 aa22.59■■□□□ 1.21
MSH5-SAPCD1-206ENST00000491552 NRAPQ86VF7 1730 aa22.58■■□□□ 1.21
MSH5-SAPCD1-206ENST00000491552 RXRBP28702 533 aa22.58■■□□□ 1.21
MSH5-SAPCD1-206ENST00000491552 C11orf95C9JLR9 678 aaPredicted RBP22.57■■□□□ 1.2
MSH5-SAPCD1-206ENST00000491552 ZRANB1Q9UGI0 708 aa22.57■■□□□ 1.2
MSH5-SAPCD1-206ENST00000491552 CHRNA2Q15822 529 aa22.56■■□□□ 1.2
MSH5-SAPCD1-206ENST00000491552 KCNH5Q8NCM2 988 aa22.56■■□□□ 1.2
MSH5-SAPCD1-206ENST00000491552 BTG4Q9NY30 223 aa22.56■■□□□ 1.2
MSH5-SAPCD1-206ENST00000491552 OVOS2A0A0J9YW53 1432 aa22.56■■□□□ 1.2
MSH5-SAPCD1-206ENST00000491552 OVOS2Q6IE36 1432 aa22.56■■□□□ 1.2
MSH5-SAPCD1-206ENST00000491552 RBM6P78332 1123 aaKnown RBP22.55■■□□□ 1.2
MSH5-SAPCD1-206ENST00000491552 NFAT5O94916 1531 aa22.55■■□□□ 1.2
MSH5-SAPCD1-206ENST00000491552 LMO7Q8WWI1 1683 aa22.54■■□□□ 1.2
MSH5-SAPCD1-206ENST00000491552 NSD3Q9BZ95 1437 aa22.54■■□□□ 1.2
MSH5-SAPCD1-206ENST00000491552 CDK12Q9NYV4 1490 aaPredicted RBP22.54■■□□□ 1.2
MSH5-SAPCD1-206ENST00000491552 KIF7Q2M1P5 1343 aa22.53■■□□□ 1.2
MSH5-SAPCD1-206ENST00000491552 SOX12O15370 315 aa22.52■■□□□ 1.2
MSH5-SAPCD1-206ENST00000491552 CARD14Q9BXL6 1004 aa22.52■■□□□ 1.2
MSH5-SAPCD1-206ENST00000491552 KIF20BQ96Q89 1820 aa22.52■■□□□ 1.2
MSH5-SAPCD1-206ENST00000491552 ZBTB7CA1YPR0 619 aa22.51■■□□□ 1.19
MSH5-SAPCD1-206ENST00000491552 VPS72Q15906 364 aa22.51■■□□□ 1.19
MSH5-SAPCD1-206ENST00000491552 COG3Q96JB2 828 aa22.5■■□□□ 1.19
MSH5-SAPCD1-206ENST00000491552 GJD4Q96KN9 370 aaPredicted RBP22.5■■□□□ 1.19
MSH5-SAPCD1-206ENST00000491552 GLI3P10071 1580 aa22.5■■□□□ 1.19
MSH5-SAPCD1-206ENST00000491552 CAMTA1Q9Y6Y1 1673 aa22.49■■□□□ 1.19
MSH5-SAPCD1-206ENST00000491552 ARHGEF25Q86VW2 580 aa22.49■■□□□ 1.19
MSH5-SAPCD1-206ENST00000491552 AATKQ6ZMQ8 1374 aa22.49■■□□□ 1.19
MSH5-SAPCD1-206ENST00000491552 RGS12O14924 1447 aa22.48■■□□□ 1.19
MSH5-SAPCD1-206ENST00000491552 FYB1O15117 783 aa22.48■■□□□ 1.19
MSH5-SAPCD1-206ENST00000491552 CCDC9Q9Y3X0 531 aaKnown RBP22.48■■□□□ 1.19
MSH5-SAPCD1-206ENST00000491552 COL18A1P39060 1754 aa22.48■■□□□ 1.19
MSH5-SAPCD1-206ENST00000491552 GGNBP2Q9H3C7 697 aa22.47■■□□□ 1.19
MSH5-SAPCD1-206ENST00000491552 ABCC6O95255 1503 aa22.47■■□□□ 1.19
MSH5-SAPCD1-206ENST00000491552 PANK3Q9H999 370 aa22.46■■□□□ 1.19
MSH5-SAPCD1-206ENST00000491552 STRN4Q9NRL3 753 aa22.46■■□□□ 1.19
MSH5-SAPCD1-206ENST00000491552 COL5A2P05997 1499 aaPredicted RBP22.46■■□□□ 1.19
MSH5-SAPCD1-206ENST00000491552 CCDC7Q96M83 1385 aa22.45■■□□□ 1.18
MSH5-SAPCD1-206ENST00000491552 LTN1O94822 1766 aa22.45■■□□□ 1.18
MSH5-SAPCD1-206ENST00000491552 EVA1CP58658 441 aa22.44■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms