RNA–Protein interactions for RNA: ENST00000491258.1

PHC3-213, Transcript of polyhomeotic homolog 3, humanhuman

TSL 1 (best)

Gene PHC3, Length 719 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHC3-213ENST00000491258 GJA5P36382 358 aa10.9□□□□□ -0.66
PHC3-213ENST00000491258 TRIM46Q7Z4K8 759 aa10.89□□□□□ -0.67
PHC3-213ENST00000491258 AK7Q96M32 723 aa10.89□□□□□ -0.67
PHC3-213ENST00000491258 CFAP99D6REC4 459 aa10.88□□□□□ -0.67
PHC3-213ENST00000491258 SPTLC1O15269 473 aa10.88□□□□□ -0.67
PHC3-213ENST00000491258 VARSP26640 1264 aaKnown RBP10.88□□□□□ -0.67
PHC3-213ENST00000491258 CSPP1Q1MSJ5 1256 aa10.88□□□□□ -0.67
PHC3-213ENST00000491258 ZBTB3Q9H5J0 574 aa10.88□□□□□ -0.67
PHC3-213ENST00000491258 PLEKHG3A1L390 1219 aa10.87□□□□□ -0.67
PHC3-213ENST00000491258 HRCP23327 699 aa10.87□□□□□ -0.67
PHC3-213ENST00000491258 LYPD8Q6UX82 237 aa10.87□□□□□ -0.67
PHC3-213ENST00000491258 RIC3Q7Z5B4 369 aa10.87□□□□□ -0.67
PHC3-213ENST00000491258 NNTQ13423 1086 aa10.86□□□□□ -0.67
PHC3-213ENST00000491258 CABLES1Q8TDN4 633 aa10.86□□□□□ -0.67
PHC3-213ENST00000491258 MAP10Q9P2G4 905 aa10.85□□□□□ -0.67
PHC3-213ENST00000491258 FAM174AQ8TBP5 190 aa10.83□□□□□ -0.68
PHC3-213ENST00000491258 TSC1Q92574 1164 aa10.83□□□□□ -0.68
PHC3-213ENST00000491258 PRPF38BQ5VTL8 546 aaKnown RBP10.82□□□□□ -0.68
PHC3-213ENST00000491258 SLC16A10Q8TF71 515 aa10.82□□□□□ -0.68
PHC3-213ENST00000491258 FOXJ1Q92949 421 aa10.82□□□□□ -0.68
PHC3-213ENST00000491258 F12P00748 615 aaPredicted RBP10.81□□□□□ -0.68
PHC3-213ENST00000491258 MPNDQ8N594 471 aa10.81□□□□□ -0.68
PHC3-213ENST00000491258 NXF1Q9UBU9 619 aaKnown RBP10.81□□□□□ -0.68
PHC3-213ENST00000491258 NUTM2BA6NNL0 878 aaPredicted RBP10.8□□□□□ -0.68
PHC3-213ENST00000491258 NUTM2EB1AL46 878 aaPredicted RBP10.8□□□□□ -0.68
PHC3-213ENST00000491258 WDR4P57081 412 aaKnown RBP10.8□□□□□ -0.68
PHC3-213ENST00000491258 PDE4DQ08499 809 aa10.8□□□□□ -0.68
PHC3-213ENST00000491258 ARID5BQ14865 1188 aa10.8□□□□□ -0.68
PHC3-213ENST00000491258 AGERQ15109 404 aa10.8□□□□□ -0.68
PHC3-213ENST00000491258 NUTM2DQ5VT03 806 aaPredicted RBP10.8□□□□□ -0.68
PHC3-213ENST00000491258 NUTM2AQ8IVF1 878 aaPredicted RBP10.8□□□□□ -0.68
PHC3-213ENST00000491258 ZFP42Q96MM3 310 aa10.8□□□□□ -0.68
PHC3-213ENST00000491258 LIMD1Q9UGP4 676 aa10.79□□□□□ -0.68
PHC3-213ENST00000491258 LOC100996750A0A140TA64 210 aa10.78□□□□□ -0.68
PHC3-213ENST00000491258 PER1O15534 1290 aaPredicted RBP10.78□□□□□ -0.68
PHC3-213ENST00000491258 ADH1CP00326 375 aa10.78□□□□□ -0.68
PHC3-213ENST00000491258 TIMP2P16035 220 aa10.78□□□□□ -0.68
PHC3-213ENST00000491258 VEGFBP49765 207 aa10.78□□□□□ -0.68
PHC3-213ENST00000491258 MYSM1Q5VVJ2 828 aa10.78□□□□□ -0.68
PHC3-213ENST00000491258 KRTAP4-6Q9BYQ5 205 aa10.78□□□□□ -0.68
PHC3-213ENST00000491258 QPCTQ16769 361 aa10.77□□□□□ -0.69
PHC3-213ENST00000491258 MRPL14Q6P1L8 145 aaKnown RBP10.77□□□□□ -0.69
PHC3-213ENST00000491258 SCARF1Q14162 830 aa10.76□□□□□ -0.69
PHC3-213ENST00000491258 PURBQ96QR8 312 aaKnown RBP10.76□□□□□ -0.69
PHC3-213ENST00000491258 SLC24A3Q9HC58 644 aa10.76□□□□□ -0.69
PHC3-213ENST00000491258 LORP23490 312 aaPredicted RBP10.74□□□□□ -0.69
PHC3-213ENST00000491258 CDK15Q96Q40 435 aa10.74□□□□□ -0.69
PHC3-213ENST00000491258 LILRB3O75022 631 aa10.73□□□□□ -0.69
PHC3-213ENST00000491258 C4orf48Q5BLP8 95 aa10.73□□□□□ -0.69
PHC3-213ENST00000491258 BPHLQ86WA6 291 aaPredicted RBP10.73□□□□□ -0.69
PHC3-213ENST00000491258 IRF7Q92985 503 aa10.73□□□□□ -0.69
PHC3-213ENST00000491258 ZIC2O95409 532 aaPredicted RBP10.72□□□□□ -0.69
PHC3-213ENST00000491258 GMPRP36959 345 aa10.72□□□□□ -0.69
PHC3-213ENST00000491258 TUSC1Q2TAM9 212 aa10.72□□□□□ -0.69
PHC3-213ENST00000491258 NPAS3Q8IXF0 933 aa10.72□□□□□ -0.69
PHC3-213ENST00000491258 HELBQ8NG08 1087 aaPredicted RBP10.72□□□□□ -0.69
PHC3-213ENST00000491258 KLF16Q9BXK1 252 aaPredicted RBP10.72□□□□□ -0.69
PHC3-213ENST00000491258 ZFAND3Q9H8U3 227 aa10.72□□□□□ -0.69
PHC3-213ENST00000491258 SOBPA7XYQ1 873 aa10.71□□□□□ -0.69
PHC3-213ENST00000491258 H3BM21 787 aa10.71□□□□□ -0.69
PHC3-213ENST00000491258 NR3C2P08235 984 aa10.71□□□□□ -0.69
PHC3-213ENST00000491258 CLK2P49760 499 aaKnown RBP10.71□□□□□ -0.69
PHC3-213ENST00000491258 ARMC2Q8NEN0 867 aa10.71□□□□□ -0.69
PHC3-213ENST00000491258 FAM181BA6NEQ2 426 aa10.7□□□□□ -0.7
PHC3-213ENST00000491258 NR5A1Q13285 461 aa10.7□□□□□ -0.7
PHC3-213ENST00000491258 RTL5Q5HYW3 569 aaPredicted RBP10.7□□□□□ -0.7
PHC3-213ENST00000491258 ITPKCQ96DU7 683 aa10.7□□□□□ -0.7
PHC3-213ENST00000491258 C6orf118Q5T5N4 469 aa10.69□□□□□ -0.7
PHC3-213ENST00000491258 GRM5P41594 1212 aa10.68□□□□□ -0.7
PHC3-213ENST00000491258 NBPF14Q5TI25 921 aa10.68□□□□□ -0.7
PHC3-213ENST00000491258 POLR3EQ9NVU0 708 aa10.68□□□□□ -0.7
PHC3-213ENST00000491258 ERBB4Q15303 1308 aa10.67□□□□□ -0.7
PHC3-213ENST00000491258 MAGEB6P1A0A0J9YX57 407 aa10.67□□□□□ -0.7
PHC3-213ENST00000491258 FSHRP23945 695 aa10.66□□□□□ -0.7
PHC3-213ENST00000491258 RSPH6AQ9H0K4 717 aa10.66□□□□□ -0.7
PHC3-213ENST00000491258 ZSCAN1Q8NBB4 408 aa10.65□□□□□ -0.7
PHC3-213ENST00000491258 C1QTNF2Q9BXJ5 285 aa10.65□□□□□ -0.7
PHC3-213ENST00000491258 MAN1A2O60476 641 aa10.64□□□□□ -0.71
PHC3-213ENST00000491258 UPP2O95045 317 aa10.64□□□□□ -0.71
PHC3-213ENST00000491258 VASH1Q7L8A9 365 aaPredicted RBP10.64□□□□□ -0.71
PHC3-213ENST00000491258 SH3RF1Q7Z6J0 888 aa10.64□□□□□ -0.71
PHC3-213ENST00000491258 CARD14Q9BXL6 1004 aa10.64□□□□□ -0.71
PHC3-213ENST00000491258 BMP2P12643 396 aa10.63□□□□□ -0.71
PHC3-213ENST00000491258 SH3BP5LQ7L8J4 393 aa10.63□□□□□ -0.71
PHC3-213ENST00000491258 LINC00528Q8N1L1 170 aa10.62□□□□□ -0.71
PHC3-213ENST00000491258 MEIOBQ8N635 442 aa10.61□□□□□ -0.71
PHC3-213ENST00000491258 MAP4K5Q9Y4K4 846 aa10.61□□□□□ -0.71
PHC3-213ENST00000491258 CTDSPL2Q05D32 466 aa10.6□□□□□ -0.71
PHC3-213ENST00000491258 TRMT44Q8IYL2 757 aaKnown RBP10.6□□□□□ -0.71
PHC3-213ENST00000491258 GPKOWQ92917 476 aaPredicted RBP eCLIP10.6□□□□□ -0.71
PHC3-213ENST00000491258 ATP1B4Q9UN42 357 aaPredicted RBP10.6□□□□□ -0.71
PHC3-213ENST00000491258 CCDC116Q8IYX3 515 aa10.59□□□□□ -0.71
PHC3-213ENST00000491258 EMILIN1Q9Y6C2 1016 aa10.58□□□□□ -0.72
PHC3-213ENST00000491258 ERFEQ4G0M1 354 aa10.57□□□□□ -0.72
PHC3-213ENST00000491258 LRRN4Q8WUT4 740 aa10.56□□□□□ -0.72
PHC3-213ENST00000491258 ARHGAP9Q9BRR9 750 aa10.56□□□□□ -0.72
PHC3-213ENST00000491258 TSEN34Q9BSV6 310 aaKnown RBP10.55□□□□□ -0.72
PHC3-213ENST00000491258 SOS2Q07890 1332 aaPredicted RBP10.55□□□□□ -0.72
PHC3-213ENST00000491258 PPFIA3O75145 1194 aa10.54□□□□□ -0.72
PHC3-213ENST00000491258 VSIG8P0DPA2 414 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms