RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 PHF8Q9UPP1 1060 aa29.16■■■□□ 2.26
SMC4-221ENST00000489573 TTC21BQ7Z4L5 1316 aa29.15■■■□□ 2.26
SMC4-221ENST00000489573 SSH2Q76I76 1423 aa29.15■■■□□ 2.26
SMC4-221ENST00000489573 TNNT2P45379 298 aaPredicted RBP29.14■■■□□ 2.26
SMC4-221ENST00000489573 CERKQ8TCT0 537 aa29.14■■■□□ 2.26
SMC4-221ENST00000489573 NME9Q86XW9 330 aa29.13■■■□□ 2.25
SMC4-221ENST00000489573 MSH6P52701 1360 aa29.13■■■□□ 2.25
SMC4-221ENST00000489573 ATF3P18847 181 aa29.13■■■□□ 2.25
SMC4-221ENST00000489573 XIRP1Q702N8 1843 aaKnown RBP29.12■■■□□ 2.25
SMC4-221ENST00000489573 CENPBP07199 599 aaPredicted RBP29.11■■■□□ 2.25
SMC4-221ENST00000489573 ESCO1Q5FWF5 840 aa29.11■■■□□ 2.25
SMC4-221ENST00000489573 C1orf167Q5SNV9 1468 aa29.11■■■□□ 2.25
SMC4-221ENST00000489573 TTC21AQ8NDW8 1320 aa29.1■■■□□ 2.25
SMC4-221ENST00000489573 MST1RQ04912 1400 aa29.1■■■□□ 2.25
SMC4-221ENST00000489573 CADPS2Q86UW7 1296 aa29.09■■■□□ 2.25
SMC4-221ENST00000489573 SCAF1Q9H7N4 1312 aaKnown RBP29.07■■■□□ 2.24
SMC4-221ENST00000489573 COG3Q96JB2 828 aa29.07■■■□□ 2.24
SMC4-221ENST00000489573 KIF1AQ12756 1690 aa29.06■■■□□ 2.24
SMC4-221ENST00000489573 ORAI2Q96SN7 254 aa29.05■■■□□ 2.24
SMC4-221ENST00000489573 ZRANB1Q9UGI0 708 aa29.05■■■□□ 2.24
SMC4-221ENST00000489573 OVOS2A0A0J9YW53 1432 aa29.04■■■□□ 2.24
SMC4-221ENST00000489573 MTHFSP49914 203 aa29.04■■■□□ 2.24
SMC4-221ENST00000489573 OVOS2Q6IE36 1432 aa29.04■■■□□ 2.24
SMC4-221ENST00000489573 HNRNPUQ00839 825 aaKnown RBP eCLIP29.02■■■□□ 2.242e-22■■■■■ 68.1
SMC4-221ENST00000489573 CFAP53Q96M91 514 aa29.01■■■□□ 2.23
SMC4-221ENST00000489573 INSRP06213 1382 aa29■■■□□ 2.23
SMC4-221ENST00000489573 AATKQ6ZMQ8 1374 aa29■■■□□ 2.23
SMC4-221ENST00000489573 USP31Q70CQ4 1352 aa29■■■□□ 2.23
SMC4-221ENST00000489573 PIK3C2AO00443 1686 aa28.99■■■□□ 2.23
SMC4-221ENST00000489573 WDR43Q15061 677 aaKnown RBP eCLIP28.99■■■□□ 2.235e-20■■■■■ 85.2
SMC4-221ENST00000489573 PSME1Q06323 249 aa28.98■■■□□ 2.23
SMC4-221ENST00000489573 SMG6Q86US8 1419 aaKnown RBP28.94■■■□□ 2.22
SMC4-221ENST00000489573 USP54Q70EL1 1684 aa28.94■■■□□ 2.22
SMC4-221ENST00000489573 FOXO3O43524 673 aa28.94■■■□□ 2.22
SMC4-221ENST00000489573 PAK3O75914 559 aaPredicted RBP28.94■■■□□ 2.22
SMC4-221ENST00000489573 BLMP54132 1417 aaPredicted RBP28.94■■■□□ 2.22
SMC4-221ENST00000489573 LTBP4Q8N2S1 1624 aa28.93■■■□□ 2.22
SMC4-221ENST00000489573 SHPRHQ149N8 1683 aa28.92■■■□□ 2.22
SMC4-221ENST00000489573 POLKQ9UBT6 870 aa28.92■■■□□ 2.22
SMC4-221ENST00000489573 ADAMTS8Q9UP79 889 aa28.92■■■□□ 2.22
SMC4-221ENST00000489573 COL3A1P02461 1466 aaPredicted RBP28.91■■■□□ 2.22
SMC4-221ENST00000489573 ABTB2Q8N961 1025 aa28.91■■■□□ 2.22
SMC4-221ENST00000489573 NLRP6P59044 892 aa28.9■■■□□ 2.22
SMC4-221ENST00000489573 PNPLA6Q8IY17 1366 aa28.9■■■□□ 2.22
SMC4-221ENST00000489573 FBLN1P23142 703 aa28.89■■■□□ 2.22
SMC4-221ENST00000489573 TRPM3Q9HCF6 1732 aaPredicted RBP28.89■■■□□ 2.22
SMC4-221ENST00000489573 CDK12Q9NYV4 1490 aaPredicted RBP28.89■■■□□ 2.21
SMC4-221ENST00000489573 KRT28Q7Z3Y7 464 aa28.88■■■□□ 2.21
SMC4-221ENST00000489573 MAP2P11137 1827 aaKnown RBP28.88■■■□□ 2.21
SMC4-221ENST00000489573 MARF1Q9Y4F3 1742 aaKnown RBP28.88■■■□□ 2.21
SMC4-221ENST00000489573 ZBED9Q6R2W3 1325 aa28.87■■■□□ 2.21
SMC4-221ENST00000489573 XPCQ01831 940 aaPredicted RBP28.87■■■□□ 2.21
SMC4-221ENST00000489573 EMILIN1Q9Y6C2 1016 aa28.87■■■□□ 2.21
SMC4-221ENST00000489573 SLAIN2Q9P270 581 aa28.86■■■□□ 2.21
SMC4-221ENST00000489573 NPHP3Q7Z494 1330 aa28.85■■■□□ 2.21
SMC4-221ENST00000489573 PPM1GO15355 546 aaPredicted RBP28.84■■■□□ 2.21
SMC4-221ENST00000489573 RRS1Q15050 365 aaKnown RBP28.84■■■□□ 2.21
SMC4-221ENST00000489573 NUTM2GQ5VZR2 741 aa28.84■■■□□ 2.21
SMC4-221ENST00000489573 BRINP3Q76B58 766 aa28.84■■■□□ 2.21
SMC4-221ENST00000489573 NUDCQ9Y266 331 aa28.82■■■□□ 2.2
SMC4-221ENST00000489573 DIAPH1O60610 1272 aaKnown RBP28.81■■■□□ 2.2
SMC4-221ENST00000489573 SBNO1A3KN83 1393 aa28.8■■■□□ 2.2
SMC4-221ENST00000489573 SOX12O15370 315 aa28.79■■■□□ 2.2
SMC4-221ENST00000489573 PXDNQ92626 1479 aa28.79■■■□□ 2.2
SMC4-221ENST00000489573 DDX17Q92841 729 aaKnown RBP28.78■■■□□ 2.2
SMC4-221ENST00000489573 ALS2Q96Q42 1657 aa28.78■■■□□ 2.2
SMC4-221ENST00000489573 MAP3K19Q56UN5 1328 aa28.76■■■□□ 2.19
SMC4-221ENST00000489573 PEAK1Q9H792 1746 aa28.76■■■□□ 2.19
SMC4-221ENST00000489573 U2AF1L5P0DN76 240 aaPredicted RBP28.75■■■□□ 2.19
SMC4-221ENST00000489573 U2AF1Q01081 240 aaKnown RBP eCLIP28.75■■■□□ 2.195e-12■■■■■ 47.2
SMC4-221ENST00000489573 U2SURPO15042 1029 aaKnown RBP28.75■■■□□ 2.19
SMC4-221ENST00000489573 LMOD2Q6P5Q4 547 aa28.75■■■□□ 2.19
SMC4-221ENST00000489573 SLIT3O75094 1523 aa28.74■■■□□ 2.19
SMC4-221ENST00000489573 TNS3Q68CZ2 1445 aa28.74■■■□□ 2.19
SMC4-221ENST00000489573 CCDC146Q8IYE0 955 aa28.74■■■□□ 2.19
SMC4-221ENST00000489573 NFAT5O94916 1531 aa28.74■■■□□ 2.19
SMC4-221ENST00000489573 SENP3-EIF4A1A0A087X0R7 540 aa28.73■■■□□ 2.19
SMC4-221ENST00000489573 KCNH5Q8NCM2 988 aa28.73■■■□□ 2.19
SMC4-221ENST00000489573 USP19O94966 1318 aa28.73■■■□□ 2.19
SMC4-221ENST00000489573 FLT4P35916 1363 aa28.72■■■□□ 2.19
SMC4-221ENST00000489573 KIF24Q5T7B8 1368 aa28.72■■■□□ 2.19
SMC4-221ENST00000489573 IL13P35225 146 aa28.71■■■□□ 2.19
SMC4-221ENST00000489573 SPATA31A3Q5VYP0 1347 aa28.69■■■□□ 2.18
SMC4-221ENST00000489573 AMPHP49418 695 aa28.69■■■□□ 2.18
SMC4-221ENST00000489573 RUNDC1Q96C34 613 aa28.69■■■□□ 2.18
SMC4-221ENST00000489573 IQSEC2Q5JU85 1478 aa28.68■■■□□ 2.18
SMC4-221ENST00000489573 SOS2Q07890 1332 aaPredicted RBP28.68■■■□□ 2.18
SMC4-221ENST00000489573 NHSL1Q5SYE7 1610 aa28.68■■■□□ 2.18
SMC4-221ENST00000489573 RTL1A6NKG5 1358 aa28.67■■■□□ 2.18
SMC4-221ENST00000489573 ARHGEF10O15013 1369 aa28.67■■■□□ 2.18
SMC4-221ENST00000489573 HSP90AB2PQ58FF8 381 aa28.67■■■□□ 2.18
SMC4-221ENST00000489573 SALL2Q9Y467 1007 aaPredicted RBP28.66■■■□□ 2.18
SMC4-221ENST00000489573 APAF1O14727 1248 aa28.65■■■□□ 2.18
SMC4-221ENST00000489573 GCP02774 474 aa28.65■■■□□ 2.18
SMC4-221ENST00000489573 EIF4A2Q14240 407 aaKnown RBP28.65■■■□□ 2.18
SMC4-221ENST00000489573 MED1Q15648 1581 aaPredicted RBP28.64■■■□□ 2.18
SMC4-221ENST00000489573 LTN1O94822 1766 aa28.64■■■□□ 2.18
SMC4-221ENST00000489573 HOXC9P31274 260 aa28.63■■■□□ 2.17
SMC4-221ENST00000489573 PNNQ9H307 717 aaKnown RBP28.63■■■□□ 2.17
SMC4-221ENST00000489573 PHRF1Q9P1Y6 1649 aaKnown RBP28.63■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 84.2 ms