RNA–Protein interactions for RNA: ENST00000489352.5

HDAC6-233, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 585 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-233ENST00000489352 ATF5Q9Y2D1 282 aaPredicted RBP17.7■□□□□ 0.42
HDAC6-233ENST00000489352 SPATA31A1Q5TZJ5 1347 aa17.7■□□□□ 0.42
HDAC6-233ENST00000489352 PRDM11Q9NQV5 511 aa17.69■□□□□ 0.42
HDAC6-233ENST00000489352 STRN4Q9NRL3 753 aa17.69■□□□□ 0.42
HDAC6-233ENST00000489352 USP35Q9P2H5 1018 aa17.69■□□□□ 0.42
HDAC6-233ENST00000489352 IFT172Q9UG01 1749 aa17.69■□□□□ 0.42
HDAC6-233ENST00000489352 RPGRIP1LQ68CZ1 1315 aa17.69■□□□□ 0.42
HDAC6-233ENST00000489352 CASZ1Q86V15 1759 aa17.68■□□□□ 0.42
HDAC6-233ENST00000489352 GPR162Q16538 588 aa17.67■□□□□ 0.42
HDAC6-233ENST00000489352 BCL11BQ9C0K0 894 aaPredicted RBP17.67■□□□□ 0.42
HDAC6-233ENST00000489352 PPLO60437 1756 aa17.66■□□□□ 0.42
HDAC6-233ENST00000489352 NRXN1Q9ULB1 1477 aa17.65■□□□□ 0.42
HDAC6-233ENST00000489352 C11orf95C9JLR9 678 aaPredicted RBP17.65■□□□□ 0.42
HDAC6-233ENST00000489352 EVA1CP58658 441 aa17.65■□□□□ 0.42
HDAC6-233ENST00000489352 DLC1Q96QB1 1528 aa17.65■□□□□ 0.42
HDAC6-233ENST00000489352 PTGER2P43116 358 aa17.64■□□□□ 0.41
HDAC6-233ENST00000489352 PMFBP1Q8TBY8 1022 aa17.64■□□□□ 0.41
HDAC6-233ENST00000489352 ROCK1Q13464 1354 aa17.64■□□□□ 0.41
HDAC6-233ENST00000489352 RGPD3A6NKT7 1758 aaPredicted RBP17.62■□□□□ 0.41
HDAC6-233ENST00000489352 RGPD4Q7Z3J3 1758 aa17.62■□□□□ 0.41
HDAC6-233ENST00000489352 PDGFDQ9GZP0 370 aaPredicted RBP17.62■□□□□ 0.41
HDAC6-233ENST00000489352 GPRASP1Q5JY77 1395 aa17.62■□□□□ 0.41
HDAC6-233ENST00000489352 PLEKHH1Q9ULM0 1364 aa17.62■□□□□ 0.41
HDAC6-233ENST00000489352 TECPR2O15040 1411 aa17.61■□□□□ 0.41
HDAC6-233ENST00000489352 KNDC1Q76NI1 1749 aa17.61■□□□□ 0.41
HDAC6-233ENST00000489352 PLSCR1O15162 318 aa17.6■□□□□ 0.41
HDAC6-233ENST00000489352 BARGINQ6ZT62 677 aa17.6■□□□□ 0.41
HDAC6-233ENST00000489352 ANO8Q9HCE9 1232 aaPredicted RBP17.6■□□□□ 0.41
HDAC6-233ENST00000489352 ABCC11Q96J66 1382 aa17.59■□□□□ 0.41
HDAC6-233ENST00000489352 PAK3O75914 559 aaPredicted RBP17.59■□□□□ 0.41
HDAC6-233ENST00000489352 PELP1Q8IZL8 1130 aaKnown RBP17.59■□□□□ 0.41
HDAC6-233ENST00000489352 STK32BQ9NY57 414 aa17.59■□□□□ 0.41
HDAC6-233ENST00000489352 ALS2Q96Q42 1657 aa17.58■□□□□ 0.41
HDAC6-233ENST00000489352 CHRNA2Q15822 529 aa17.58■□□□□ 0.4
HDAC6-233ENST00000489352 TMEM132EQ6IEE7 984 aa17.58■□□□□ 0.4
HDAC6-233ENST00000489352 MTFR1LQ9H019 292 aa17.58■□□□□ 0.4
HDAC6-233ENST00000489352 ARXQ96QS3 562 aa17.57■□□□□ 0.4
HDAC6-233ENST00000489352 TRPM3Q9HCF6 1732 aaPredicted RBP17.57■□□□□ 0.4
HDAC6-233ENST00000489352 ITGAEP38570 1179 aa17.56■□□□□ 0.4
HDAC6-233ENST00000489352 HSPA6P17066 643 aa17.55■□□□□ 0.4
HDAC6-233ENST00000489352 TCP11L2Q8N4U5 519 aa17.55■□□□□ 0.4
HDAC6-233ENST00000489352 SBF2Q86WG5 1849 aa17.55■□□□□ 0.4
HDAC6-233ENST00000489352 KIAA0232Q92628 1395 aa17.54■□□□□ 0.4
HDAC6-233ENST00000489352 ZC3H6P61129 1189 aaKnown RBP17.53■□□□□ 0.4
HDAC6-233ENST00000489352 KLHL34Q8N239 644 aa17.53■□□□□ 0.4
HDAC6-233ENST00000489352 GOLGB1Q14789 3259 aaKnown RBP17.53■□□□□ 0.4
HDAC6-233ENST00000489352 SHANK3Q9BYB0 1731 aa17.52■□□□□ 0.4
HDAC6-233ENST00000489352 CRYBG1Q9Y4K1 1723 aa17.52■□□□□ 0.4
HDAC6-233ENST00000489352 ADGRF5Q8IZF2 1346 aa17.52■□□□□ 0.4
HDAC6-233ENST00000489352 SAFB2Q14151 953 aaKnown RBP eCLIP17.52■□□□□ 0.4
HDAC6-233ENST00000489352 OVOS2A0A0G2JMS6 1433 aa17.52■□□□□ 0.4
HDAC6-233ENST00000489352 OVOS2A0A0J9YW53 1432 aa17.52■□□□□ 0.4
HDAC6-233ENST00000489352 OVOS2Q6IE36 1432 aa17.52■□□□□ 0.4
HDAC6-233ENST00000489352 CAPN15O75808 1086 aa17.51■□□□□ 0.39
HDAC6-233ENST00000489352 SLC15A2Q16348 729 aa17.51■□□□□ 0.39
HDAC6-233ENST00000489352 SIRT1Q96EB6 747 aa17.51■□□□□ 0.39
HDAC6-233ENST00000489352 YTHDC2Q9H6S0 1430 aaKnown RBP17.51■□□□□ 0.39
HDAC6-233ENST00000489352 THRAP3Q9Y2W1 955 aaKnown RBP17.51■□□□□ 0.39
HDAC6-233ENST00000489352 SSH2Q76I76 1423 aa17.5■□□□□ 0.39
HDAC6-233ENST00000489352 NGDNQ8NEJ9 315 aaKnown RBP17.5■□□□□ 0.39
HDAC6-233ENST00000489352 PARP4Q9UKK3 1724 aaKnown RBP17.5■□□□□ 0.39
HDAC6-233ENST00000489352 ACIN1Q9UKV3 1341 aaKnown RBP17.49■□□□□ 0.39
HDAC6-233ENST00000489352 ANKARQ7Z5J8 1434 aa17.49■□□□□ 0.39
HDAC6-233ENST00000489352 LARP1Q6PKG0 1096 aaKnown RBP17.49■□□□□ 0.39
HDAC6-233ENST00000489352 MAP3K5Q99683 1374 aa17.49■□□□□ 0.39
HDAC6-233ENST00000489352 SGIP1Q9BQI5 828 aa17.48■□□□□ 0.39
HDAC6-233ENST00000489352 GPBP1L1Q9HC44 474 aaPredicted RBP17.48■□□□□ 0.39
HDAC6-233ENST00000489352 POGKQ9P215 609 aa17.47■□□□□ 0.39
HDAC6-233ENST00000489352 LOC105371045A0A1W2PR82 267 aa17.46■□□□□ 0.39
HDAC6-233ENST00000489352 RGL3Q3MIN7 710 aa17.46■□□□□ 0.39
HDAC6-233ENST00000489352 PROM2Q8N271 834 aa17.46■□□□□ 0.39
HDAC6-233ENST00000489352 PHRF1Q9P1Y6 1649 aaKnown RBP17.46■□□□□ 0.39
HDAC6-233ENST00000489352 GRIN3BO60391 1043 aa17.45■□□□□ 0.38
HDAC6-233ENST00000489352 TXNRD1Q16881 649 aa17.45■□□□□ 0.38
HDAC6-233ENST00000489352 PRAM1Q96QH2 718 aa17.45■□□□□ 0.38
HDAC6-233ENST00000489352 PEAK1Q9H792 1746 aa17.44■□□□□ 0.38
HDAC6-233ENST00000489352 DHX57Q6P158 1386 aaKnown RBP17.43■□□□□ 0.38
HDAC6-233ENST00000489352 DDB1Q16531 1140 aa17.43■□□□□ 0.38
HDAC6-233ENST00000489352 EIF3AQ14152 1382 aaKnown RBP17.42■□□□□ 0.38
HDAC6-233ENST00000489352 ANKRD30BQ9BXX2 1392 aa17.42■□□□□ 0.38
HDAC6-233ENST00000489352 POLD1P28340 1107 aa17.42■□□□□ 0.38
HDAC6-233ENST00000489352 NUTM2GQ5VZR2 741 aa17.42■□□□□ 0.38
HDAC6-233ENST00000489352 AKAP12Q02952 1782 aa17.41■□□□□ 0.38
HDAC6-233ENST00000489352 ATP10DQ9P241 1426 aa17.41■□□□□ 0.38
HDAC6-233ENST00000489352 PTF1AQ7RTS3 328 aa17.4■□□□□ 0.38
HDAC6-233ENST00000489352 ZNF526Q8TF50 670 aaPredicted RBP17.39■□□□□ 0.37
HDAC6-233ENST00000489352 HIRIP3Q9BW71 556 aaPredicted RBP17.39■□□□□ 0.37
HDAC6-233ENST00000489352 ATP7BP35670 1465 aa17.38■□□□□ 0.37
HDAC6-233ENST00000489352 APLP1P51693 650 aa17.37■□□□□ 0.37
HDAC6-233ENST00000489352 SLC4A1APQ9BWU0 796 aaKnown RBP17.37■□□□□ 0.37
HDAC6-233ENST00000489352 PIK3C2GO75747 1445 aa17.37■□□□□ 0.37
HDAC6-233ENST00000489352 LRRC37A3O60309 1634 aa17.36■□□□□ 0.37
HDAC6-233ENST00000489352 TOPAZ1Q8N9V7 1692 aa17.36■□□□□ 0.37
HDAC6-233ENST00000489352 TNS4Q8IZW8 715 aa17.35■□□□□ 0.37
HDAC6-233ENST00000489352 CRB1P82279 1406 aa17.35■□□□□ 0.37
HDAC6-233ENST00000489352 PRELPP51888 382 aa17.34■□□□□ 0.37
HDAC6-233ENST00000489352 ITSN1Q15811 1721 aa17.34■□□□□ 0.37
HDAC6-233ENST00000489352 KAT6BQ8WYB5 2073 aa17.33■□□□□ 0.37
HDAC6-233ENST00000489352 LMO7Q8WWI1 1683 aa17.33■□□□□ 0.37
HDAC6-233ENST00000489352 TULP4Q9NRJ4 1543 aa17.33■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms