RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 FBXO3Q9UK99 471 aa21.12■□□□□ 0.97
NPHP4-209ENST00000489180 MAP4K4O95819 1239 aaPredicted RBP21.12■□□□□ 0.97
NPHP4-209ENST00000489180 LETM1O95202 739 aaPredicted RBP21.12■□□□□ 0.97
NPHP4-209ENST00000489180 AK7Q96M32 723 aa21.12■□□□□ 0.97
NPHP4-209ENST00000489180 GCC1Q96CN9 775 aa21.11■□□□□ 0.97
NPHP4-209ENST00000489180 HSP90B2PQ58FF3 399 aa21.11■□□□□ 0.97
NPHP4-209ENST00000489180 PNISRQ8TF01 805 aaKnown RBP21.1■□□□□ 0.97
NPHP4-209ENST00000489180 KINO60870 393 aaKnown RBP21.09■□□□□ 0.97
NPHP4-209ENST00000489180 CASKIN1Q8WXD9 1431 aa21.09■□□□□ 0.97
NPHP4-209ENST00000489180 STK3Q13188 491 aa21.09■□□□□ 0.97
NPHP4-209ENST00000489180 CAGE1Q8TC20 777 aa21.09■□□□□ 0.97
NPHP4-209ENST00000489180 STAC3Q96MF2 364 aa21.09■□□□□ 0.97
NPHP4-209ENST00000489180 SLC12A5Q9H2X9 1139 aa21.09■□□□□ 0.97
NPHP4-209ENST00000489180 CFTRP13569 1480 aa21.08■□□□□ 0.97
NPHP4-209ENST00000489180 SLC4A2P04920 1241 aa21.08■□□□□ 0.97
NPHP4-209ENST00000489180 ACBD3Q9H3P7 528 aa21.08■□□□□ 0.97
NPHP4-209ENST00000489180 GNAI2P04899 355 aa21.07■□□□□ 0.96
NPHP4-209ENST00000489180 BRMS1Q9HCU9 246 aa21.07■□□□□ 0.96
NPHP4-209ENST00000489180 FAM177BA6PVY3 158 aa21.07■□□□□ 0.96
NPHP4-209ENST00000489180 ARAP1Q96P48 1450 aa21.06■□□□□ 0.96
NPHP4-209ENST00000489180 K7ELQ4 463 aaPredicted RBP21.06■□□□□ 0.96
NPHP4-209ENST00000489180 GRPEL1Q9HAV7 217 aa21.06■□□□□ 0.96
NPHP4-209ENST00000489180 MCM2P49736 904 aa21.06■□□□□ 0.96
NPHP4-209ENST00000489180 BRPF1P55201 1214 aaPredicted RBP21.06■□□□□ 0.96
NPHP4-209ENST00000489180 AFAP1Q8N556 730 aa21.06■□□□□ 0.96
NPHP4-209ENST00000489180 CCDC43Q96MW1 224 aaKnown RBP21.06■□□□□ 0.96
NPHP4-209ENST00000489180 RRBP1Q9P2E9 1410 aaKnown RBP21.05■□□□□ 0.96
NPHP4-209ENST00000489180 SMG6Q86US8 1419 aaKnown RBP21.05■□□□□ 0.96
NPHP4-209ENST00000489180 PRAM1Q96QH2 718 aa21.04■□□□□ 0.96
NPHP4-209ENST00000489180 SKIDA1Q1XH10 827 aa21.04■□□□□ 0.96
NPHP4-209ENST00000489180 RBM33Q96EV2 1170 aaKnown RBP21.04■□□□□ 0.96
NPHP4-209ENST00000489180 GAS2L2Q8NHY3 880 aa21.03■□□□□ 0.96
NPHP4-209ENST00000489180 XBP1P17861 261 aa21.03■□□□□ 0.96
NPHP4-209ENST00000489180 EPS15P42566 896 aa21.03■□□□□ 0.96
NPHP4-209ENST00000489180 MVPQ14764 893 aaKnown RBP21.03■□□□□ 0.96
NPHP4-209ENST00000489180 RRP12Q5JTH9 1297 aaKnown RBP21.03■□□□□ 0.96
NPHP4-209ENST00000489180 ARHGAP5Q13017 1502 aa21.03■□□□□ 0.96
NPHP4-209ENST00000489180 CT47A1Q5JQC4 288 aaPredicted RBP21.03■□□□□ 0.96
NPHP4-209ENST00000489180 MTERF4Q7Z6M4 381 aaKnown RBP21.03■□□□□ 0.96
NPHP4-209ENST00000489180 MAP7D2Q96T17 732 aa21.03■□□□□ 0.96
NPHP4-209ENST00000489180 SIL1Q9H173 461 aa21.03■□□□□ 0.96
NPHP4-209ENST00000489180 OFD1O75665 1012 aa21.02■□□□□ 0.96
NPHP4-209ENST00000489180 STK38Q15208 465 aa21.02■□□□□ 0.96
NPHP4-209ENST00000489180 AQRO60306 1485 aaKnown RBP eCLIP21.02■□□□□ 0.962e-7■■■■■ 54.1
NPHP4-209ENST00000489180 PDCP20941 246 aa21.02■□□□□ 0.96
NPHP4-209ENST00000489180 STK11IPQ8N1F8 1099 aa21.02■□□□□ 0.96
NPHP4-209ENST00000489180 ABTB2Q8N961 1025 aa21.02■□□□□ 0.96
NPHP4-209ENST00000489180 NOM1Q5C9Z4 860 aaKnown RBP21.02■□□□□ 0.95
NPHP4-209ENST00000489180 CHD1LQ86WJ1 897 aa21.02■□□□□ 0.95
NPHP4-209ENST00000489180 ATF7IPQ6VMQ6 1270 aa21.01■□□□□ 0.95
NPHP4-209ENST00000489180 LRRCC1Q9C099 1032 aa21.01■□□□□ 0.95
NPHP4-209ENST00000489180 SULT6B1Q6IMI4 303 aa21.01■□□□□ 0.95
NPHP4-209ENST00000489180 SKAP1Q86WV1 359 aa21.01■□□□□ 0.95
NPHP4-209ENST00000489180 CYP46A1Q9Y6A2 500 aa21■□□□□ 0.95
NPHP4-209ENST00000489180 CWC22Q9HCG8 908 aaKnown RBP21■□□□□ 0.95
NPHP4-209ENST00000489180 ZNF396Q96N95 335 aaPredicted RBP21■□□□□ 0.95
NPHP4-209ENST00000489180 TBC1D2BQ9UPU7 963 aa21■□□□□ 0.95
NPHP4-209ENST00000489180 CDR1P51861 262 aa21■□□□□ 0.95
NPHP4-209ENST00000489180 HIP1O00291 1037 aa20.99■□□□□ 0.95
NPHP4-209ENST00000489180 SART3Q15020 963 aaKnown RBP20.99■□□□□ 0.95
NPHP4-209ENST00000489180 TNMDQ9H2S6 317 aa20.99■□□□□ 0.95
NPHP4-209ENST00000489180 WDR97A6NE52 1622 aa20.98■□□□□ 0.95
NPHP4-209ENST00000489180 CCDC192P0DO97 292 aa20.98■□□□□ 0.95
NPHP4-209ENST00000489180 HDGFL1Q5TGJ6 251 aa20.98■□□□□ 0.95
NPHP4-209ENST00000489180 FAM69CQ0P6D2 419 aa20.97■□□□□ 0.95
NPHP4-209ENST00000489180 CABP1Q9NZU7 370 aa20.97■□□□□ 0.95
NPHP4-209ENST00000489180 TXNDC2Q86VQ3 553 aa20.97■□□□□ 0.95
NPHP4-209ENST00000489180 ERC1Q8IUD2 1116 aa20.97■□□□□ 0.95
NPHP4-209ENST00000489180 SERPINC1P01008 464 aa20.97■□□□□ 0.95
NPHP4-209ENST00000489180 TTC39AQ5SRH9 613 aa20.97■□□□□ 0.95
NPHP4-209ENST00000489180 WDR63Q8IWG1 891 aa20.97■□□□□ 0.95
NPHP4-209ENST00000489180 WDR33Q9C0J8 1336 aaKnown RBP20.96■□□□□ 0.95
NPHP4-209ENST00000489180 KIAA1107Q9UPP5 1409 aa20.96■□□□□ 0.95
NPHP4-209ENST00000489180 MCM4P33991 863 aa20.96■□□□□ 0.95
NPHP4-209ENST00000489180 HMGN5P82970 282 aaKnown RBP20.96■□□□□ 0.95
NPHP4-209ENST00000489180 CDK19Q9BWU1 502 aa20.96■□□□□ 0.95
NPHP4-209ENST00000489180 ATF3P18847 181 aa20.96■□□□□ 0.95
NPHP4-209ENST00000489180 HSP90AB2PQ58FF8 381 aa20.96■□□□□ 0.95
NPHP4-209ENST00000489180 ZFYVE27Q5T4F4 411 aa20.96■□□□□ 0.95
NPHP4-209ENST00000489180 FILIP1LQ4L180 1135 aa20.95■□□□□ 0.94
NPHP4-209ENST00000489180 ERBINQ96RT1 1412 aa20.95■□□□□ 0.94
NPHP4-209ENST00000489180 ME1P48163 572 aa20.95■□□□□ 0.94
NPHP4-209ENST00000489180 CCT4P50991 539 aaKnown RBP20.95■□□□□ 0.94
NPHP4-209ENST00000489180 PLEKHO1Q53GL0 409 aaPredicted RBP20.95■□□□□ 0.94
NPHP4-209ENST00000489180 ODF2Q5BJF6 829 aa20.95■□□□□ 0.94
NPHP4-209ENST00000489180 UQCRHLA0A096LP55 91 aa20.94■□□□□ 0.94
NPHP4-209ENST00000489180 UQCRHP07919 91 aa20.94■□□□□ 0.94
NPHP4-209ENST00000489180 LARP1BQ659C4 914 aaKnown RBP20.94■□□□□ 0.94
NPHP4-209ENST00000489180 ERCC4Q92889 916 aaPredicted RBP20.94■□□□□ 0.94
NPHP4-209ENST00000489180 SCAPERQ9BY12 1400 aa20.94■□□□□ 0.94
NPHP4-209ENST00000489180 H0YHG0 523 aa20.94■□□□□ 0.94
NPHP4-209ENST00000489180 SMARCE1Q969G3 411 aa20.94■□□□□ 0.94
NPHP4-209ENST00000489180 ESCO1Q5FWF5 840 aa20.94■□□□□ 0.94
NPHP4-209ENST00000489180 FAM177A1Q8N128 213 aaPredicted RBP20.94■□□□□ 0.94
NPHP4-209ENST00000489180 RBM42Q9BTD8 480 aaKnown RBP20.94■□□□□ 0.94
NPHP4-209ENST00000489180 AEBP1Q8IUX7 1158 aa20.93■□□□□ 0.94
NPHP4-209ENST00000489180 IKQ13123 557 aaPredicted RBP20.93■□□□□ 0.94
NPHP4-209ENST00000489180 MAGEC2Q9UBF1 373 aaPredicted RBP20.93■□□□□ 0.94
NPHP4-209ENST00000489180 CWC15Q9P013 229 aaKnown RBP20.92■□□□□ 0.94
NPHP4-209ENST00000489180 IL1RAPL2Q9NP60 686 aa20.92■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms