RNA–Protein interactions for RNA: ENST00000488910.1

ATG3-205, Transcript of autophagy related 3, humanhuman

TSL 2

Gene ATG3, Length 681 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG3-205ENST00000488910 CARD11Q9BXL7 1154 aa24.88■■□□□ 1.57
ATG3-205ENST00000488910 SLIT2O94813 1529 aa24.87■■□□□ 1.57
ATG3-205ENST00000488910 PPIP5K1Q6PFW1 1433 aa24.86■■□□□ 1.57
ATG3-205ENST00000488910 GJD4Q96KN9 370 aaPredicted RBP24.84■■□□□ 1.57
ATG3-205ENST00000488910 ABCA3Q99758 1704 aa24.83■■□□□ 1.57
ATG3-205ENST00000488910 RALGAPBQ86X10 1494 aa24.83■■□□□ 1.57
ATG3-205ENST00000488910 FAM83GA6ND36 823 aa24.83■■□□□ 1.57
ATG3-205ENST00000488910 RGS12O14924 1447 aa24.83■■□□□ 1.57
ATG3-205ENST00000488910 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.83■■□□□ 1.57
ATG3-205ENST00000488910 CABP1Q9NZU7 370 aa24.82■■□□□ 1.56
ATG3-205ENST00000488910 BRD4O60885 1362 aaPredicted RBP24.81■■□□□ 1.56
ATG3-205ENST00000488910 SBNO2Q9Y2G9 1366 aa24.8■■□□□ 1.56
ATG3-205ENST00000488910 PCGF6Q9BYE7 350 aa24.79■■□□□ 1.56
ATG3-205ENST00000488910 CLSPNQ9HAW4 1339 aa24.79■■□□□ 1.56
ATG3-205ENST00000488910 NWD2Q9ULI1 1742 aa24.78■■□□□ 1.56
ATG3-205ENST00000488910 VPS72Q15906 364 aa24.78■■□□□ 1.56
ATG3-205ENST00000488910 ABTB2Q8N961 1025 aa24.78■■□□□ 1.56
ATG3-205ENST00000488910 UPF1Q92900 1129 aaKnown RBP eCLIP24.78■■□□□ 1.56
ATG3-205ENST00000488910 TIMELESSQ9UNS1 1208 aa24.76■■□□□ 1.55
ATG3-205ENST00000488910 ATAD2Q6PL18 1390 aa24.76■■□□□ 1.55
ATG3-205ENST00000488910 CRYBG1Q9Y4K1 1723 aa24.75■■□□□ 1.55
ATG3-205ENST00000488910 NUTM2GQ5VZR2 741 aa24.75■■□□□ 1.55
ATG3-205ENST00000488910 ZNF692Q9BU19 519 aaPredicted RBP24.75■■□□□ 1.55
ATG3-205ENST00000488910 PLCH1Q4KWH8 1693 aa24.75■■□□□ 1.55
ATG3-205ENST00000488910 NLRP13Q86W25 1043 aa24.74■■□□□ 1.55
ATG3-205ENST00000488910 BTG4Q9NY30 223 aa24.74■■□□□ 1.55
ATG3-205ENST00000488910 COL14A1Q05707 1796 aaKnown RBP24.73■■□□□ 1.55
ATG3-205ENST00000488910 PRDM11Q9NQV5 511 aa24.73■■□□□ 1.55
ATG3-205ENST00000488910 USP6P35125 1406 aa24.72■■□□□ 1.55
ATG3-205ENST00000488910 SLC24A1O60721 1099 aa24.72■■□□□ 1.55
ATG3-205ENST00000488910 PUS7Q96PZ0 661 aaKnown RBP24.7■■□□□ 1.54
ATG3-205ENST00000488910 CCDC9Q9Y3X0 531 aaKnown RBP24.7■■□□□ 1.54
ATG3-205ENST00000488910 KIAA0232Q92628 1395 aa24.69■■□□□ 1.54
ATG3-205ENST00000488910 USP19O94966 1318 aa24.69■■□□□ 1.54
ATG3-205ENST00000488910 GLI3P10071 1580 aa24.69■■□□□ 1.54
ATG3-205ENST00000488910 PHRF1Q9P1Y6 1649 aaKnown RBP24.68■■□□□ 1.54
ATG3-205ENST00000488910 ONECUT3O60422 494 aaPredicted RBP24.68■■□□□ 1.54
ATG3-205ENST00000488910 ZC3H6P61129 1189 aaKnown RBP24.68■■□□□ 1.54
ATG3-205ENST00000488910 SSH2Q76I76 1423 aa24.68■■□□□ 1.54
ATG3-205ENST00000488910 ST20-MTHFSA0A0A6YYL1 179 aa24.66■■□□□ 1.54
ATG3-205ENST00000488910 GCP02774 474 aa24.66■■□□□ 1.54
ATG3-205ENST00000488910 NLRP6P59044 892 aa24.66■■□□□ 1.54
ATG3-205ENST00000488910 CPSF1Q10570 1443 aaKnown RBP24.65■■□□□ 1.54
ATG3-205ENST00000488910 NRAPQ86VF7 1730 aa24.65■■□□□ 1.54
ATG3-205ENST00000488910 CPDO75976 1380 aa24.65■■□□□ 1.54
ATG3-205ENST00000488910 CHRNA2Q15822 529 aa24.64■■□□□ 1.54
ATG3-205ENST00000488910 SEPT12Q8IYM1 358 aa24.64■■□□□ 1.54
ATG3-205ENST00000488910 TTC21BQ7Z4L5 1316 aa24.63■■□□□ 1.53
ATG3-205ENST00000488910 TTC21AQ8NDW8 1320 aa24.63■■□□□ 1.53
ATG3-205ENST00000488910 TESK2Q96S53 571 aa24.63■■□□□ 1.53
ATG3-205ENST00000488910 AKAP12Q02952 1782 aa24.62■■□□□ 1.53
ATG3-205ENST00000488910 KTN1Q86UP2 1357 aaKnown RBP24.62■■□□□ 1.53
ATG3-205ENST00000488910 SPATA31A5Q5VU36 1347 aa24.61■■□□□ 1.53
ATG3-205ENST00000488910 SPATA31A7Q8IWB4 1347 aa24.61■■□□□ 1.53
ATG3-205ENST00000488910 TMC1Q8TDI8 760 aa24.61■■□□□ 1.53
ATG3-205ENST00000488910 NRKQ7Z2Y5 1582 aa24.61■■□□□ 1.53
ATG3-205ENST00000488910 EVA1CP58658 441 aa24.59■■□□□ 1.53
ATG3-205ENST00000488910 HDGFL2Q7Z4V5 671 aaPredicted RBP24.58■■□□□ 1.53
ATG3-205ENST00000488910 CCDC125Q86Z20 511 aa24.58■■□□□ 1.53
ATG3-205ENST00000488910 CCER1Q8TC90 406 aaPredicted RBP24.58■■□□□ 1.53
ATG3-205ENST00000488910 SLC12A5Q9H2X9 1139 aa24.58■■□□□ 1.53
ATG3-205ENST00000488910 FAM98CQ17RN3 349 aaKnown RBP24.57■■□□□ 1.52
ATG3-205ENST00000488910 STRN4Q9NRL3 753 aa24.57■■□□□ 1.52
ATG3-205ENST00000488910 TERF2IPQ9NYB0 399 aa24.57■■□□□ 1.52
ATG3-205ENST00000488910 PIK3C2AO00443 1686 aa24.56■■□□□ 1.52
ATG3-205ENST00000488910 SLIT3O75094 1523 aa24.56■■□□□ 1.52
ATG3-205ENST00000488910 USP47Q96K76 1375 aa24.56■■□□□ 1.52
ATG3-205ENST00000488910 KCNH5Q8NCM2 988 aa24.56■■□□□ 1.52
ATG3-205ENST00000488910 KRT27Q7Z3Y8 459 aa24.55■■□□□ 1.52
ATG3-205ENST00000488910 BRWD3Q6RI45 1802 aa24.55■■□□□ 1.52
ATG3-205ENST00000488910 EP400Q96L91 3159 aa24.55■■□□□ 1.52
ATG3-205ENST00000488910 SPATA31A1Q5TZJ5 1347 aa24.55■■□□□ 1.52
ATG3-205ENST00000488910 NINLQ9Y2I6 1382 aa24.54■■□□□ 1.52
ATG3-205ENST00000488910 CD163L1Q9NR16 1453 aa24.54■■□□□ 1.52
ATG3-205ENST00000488910 A0A0G2JS52 829 aa24.54■■□□□ 1.52
ATG3-205ENST00000488910 MYT1Q01538 1121 aa24.54■■□□□ 1.52
ATG3-205ENST00000488910 CAMTA1Q9Y6Y1 1673 aa24.53■■□□□ 1.52
ATG3-205ENST00000488910 MON2Q7Z3U7 1717 aa24.53■■□□□ 1.52
ATG3-205ENST00000488910 TMF1P82094 1093 aa24.53■■□□□ 1.52
ATG3-205ENST00000488910 AATKQ6ZMQ8 1374 aa24.53■■□□□ 1.52
ATG3-205ENST00000488910 LMO7Q8WWI1 1683 aa24.52■■□□□ 1.52
ATG3-205ENST00000488910 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.51■■□□□ 1.51
ATG3-205ENST00000488910 USP31Q70CQ4 1352 aa24.5■■□□□ 1.51
ATG3-205ENST00000488910 EDC4Q6P2E9 1401 aaKnown RBP24.5■■□□□ 1.51
ATG3-205ENST00000488910 CDCA8Q53HL2 280 aa24.49■■□□□ 1.51
ATG3-205ENST00000488910 LARP1Q6PKG0 1096 aaKnown RBP24.49■■□□□ 1.51
ATG3-205ENST00000488910 ARHGEF25Q86VW2 580 aa24.49■■□□□ 1.51
ATG3-205ENST00000488910 A0A1W2PP64 1363 aa24.48■■□□□ 1.51
ATG3-205ENST00000488910 ZBTB7CA1YPR0 619 aa24.48■■□□□ 1.51
ATG3-205ENST00000488910 BARGINQ6ZT62 677 aa24.48■■□□□ 1.51
ATG3-205ENST00000488910 THRAP3Q9Y2W1 955 aaKnown RBP24.47■■□□□ 1.51
ATG3-205ENST00000488910 COL5A2P05997 1499 aaPredicted RBP24.46■■□□□ 1.51
ATG3-205ENST00000488910 NME9Q86XW9 330 aa24.46■■□□□ 1.51
ATG3-205ENST00000488910 TCP11L2Q8N4U5 519 aa24.46■■□□□ 1.51
ATG3-205ENST00000488910 USP35Q9P2H5 1018 aa24.46■■□□□ 1.51
ATG3-205ENST00000488910 ZRANB1Q9UGI0 708 aa24.45■■□□□ 1.5
ATG3-205ENST00000488910 BLMP54132 1417 aaPredicted RBP24.44■■□□□ 1.5
ATG3-205ENST00000488910 THSD7AQ9UPZ6 1657 aa24.44■■□□□ 1.5
ATG3-205ENST00000488910 SOX12O15370 315 aa24.44■■□□□ 1.5
ATG3-205ENST00000488910 AXIN2Q9Y2T1 843 aa24.43■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms